BAC Information

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BAC

Clone NameB6Ng01-099N15
Chromosome2 (Build37)7 (Build37)
Map Location 20,588,428 - 20,588,68514,156,818 - 14,157,394
singlet/doubletsingletsinglet
Overlap geneEtl4
Upstream geneLOC667564, LOC100041302, LOC433406, LOC654360, LOC667609
Downstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099N15.bB6Ng01-099N15.g
ACCDH909530DH909531
length1,000901
definitionDH909530|Mus musculus domesticus DNA, BAC clone: B6Ng01-099N15, 5' end.DH909531|Mus musculus domesticus DNA, BAC clone: B6Ng01-099N15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,588,428 - 20,588,685)(14,156,818 - 14,157,394)
sequence
gaattcaggtaccgctcatcagcaacaattacagttatgaagtaggaatg
aaaataatttatggcatggggtcaccacaacatgaggagctgtattaaaa
agttgcagcagtaggacagttgagagctactgatacaaatgcatcaattt
gtccattaccttgatctttattttttatttatttatttttttcctgagac
agggtttctctgtatatccctggctgtcctggaactcattttgtaaacta
ggctggccgctgatgggagtgtgtattagtcagggttctctagagtcaca
gaacttatggatagtctctagatagtaaaggaatttattgatgacttaca
gttggcagcccaattcccaacaattgttcagtcacagctgtgaatggaag
tccaaggatctagcagttactcagtctcacgcagcaagcaggcgaaggag
caagagctagactcccttcttccaatgtccttatattttctccagcagaa
ggtgtagcccagattaaaggtgtagcccagattaaaggtgtgttccttaa
actcggagattcaatcttctggaatccatagccactatggctcaagatct
ccaaaccaagatccagataagggtcacaggtgagccttccaattctggat
tgtagttcattccaaatattgtcaagttgacaaccaggaatagccactac
agagtgcaagctggtacaaccactctggaaatcagtttggtggttcctta
gaatattggacatagtactacctgaggacctagaaattctcctcctgagc
atatacccagatgatgctccaacatataataagggtcacatgctctactt
tgttcatagctgccctatttataggagtcagaaggcagaaagacctcaaa
tgttcatcaacagaggaatggatacagaaatgtatttcatttactcaatg
gagtaacacagctattaaaacaattgatttctaaaattcttagggaatgg

gaattctcttctacacttgatagagcagtggttctcaaccttcctaatgc
tgtggccctttaatacagctcctcacattatggtgagtccccaaacataa
aattgttttgctactgtaatgaattgttatgtaaataactgatatgcagg
acacctgataatatgactactggaaaagggttgtttgacttccaaaggtt
gagaaccactgtgccagggcaattacagccaggaaacaaaatttttacaa
aagtttctgacatacctgatatattacttctgcctggaaggaaatctctc
tctctctctcccccccccagtaactctagagagatgattttacattcgga
acccaatttgggagagaaatgggtgctctttttgattatgattttccatc
atagcacgatctcaaatcagaactatcacaattcaataaacatacatttc
tcagaataaaagagcctttcccatatctcttatttatagaatgatatttg
tggctgggagttatgacatccttgaaatatctttttcctgctttgttgaa
aaatattcttctagtcctctttactatggtcataactttccccaaagaca
agcagatatgatcctgaatattcatgaagttatggaaattatgataaaca
tatacataatgagtgaggcatgctccaaagatttgcctcatgttacatgc
taaaggacattttgatctgagactagaacatcccgccctgtgtaaaaact
gtaacgagcaccagaaaagaaacttattatcccttttttgctcgactgga
gaagttattaatgtcctggggctctgggtcattggtactgaaggaaatat
tttcttgatttctcaggaacaggactggtattttattggaagtattaggt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_20588428_20588685
seq2: B6Ng01-099N15.b_40_297

seq1  GAATTCAGGTACCGCTCAGCAGCAACAATTACAGTTATGAAGTAGGAATG  50
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAATTCAGGTACCGCTCATCAGCAACAATTACAGTTATGAAGTAGGAATG  50

seq1  AAAATAATTTATGGCATGGGGTCACCACAACATGAGGAGCTGTATTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATTTATGGCATGGGGTCACCACAACATGAGGAGCTGTATTAAAA  100

seq1  AGTTGCAGCAGTAGGACAGTTGAGAGCTACTGATACAAATGCATCAGTTT  150
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGTTGCAGCAGTAGGACAGTTGAGAGCTACTGATACAAATGCATCAATTT  150

seq1  GTCCATTACCTTGATCTTTATTTTTTATTTATTTATTTTTTTCCTGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTACCTTGATCTTTATTTTTTATTTATTTATTTTTTTCCTGAGAC  200

seq1  AGGGTTTCTCTGTATATCCCTGGCTGTCCTGGAACTCATTTTGTAGACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGGTTTCTCTGTATATCCCTGGCTGTCCTGGAACTCATTTTGTAAACTA  250

seq1  GGCTGGCC  258
      ||||||||
seq2  GGCTGGCC  258

seq1: chr7_14156818_14157394
seq2: B6Ng01-099N15.g_384_965

seq1  AGTAACTCTAGAGAGATGATTTTACATTCGGAACCCAATTTGGGAGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTCTAGAGAGATGATTTTACATTCGGAACCCAATTTGGGAGAGAA  50

seq1  ATGGGTGCTCTTTTTGATTATGATTTTCCATCATAGCACGATCTCAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGCTCTTTTTGATTATGATTTTCCATCATAGCACGATCTCAAATC  100

seq1  AGAACTATCACAATTCAATAAACATACATTTCTCAGAATAAAAGAGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATCACAATTCAATAAACATACATTTCTCAGAATAAAAGAGCCTT  150

seq1  TCCCATATCTCTTATTTATAGAATGATATTTGTGGCTGGGAGTTATGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATATCTCTTATTTATAGAATGATATTTGTGGCTGGGAGTTATGACA  200

seq1  TCCTTGAAATATCTTTTTCCTGCTTTGTTGAAAAATATTCTTCTAGTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAAATATCTTTTTCCTGCTTTGTTGAAAAATATTCTTCTAGTCCT  250

seq1  CTTTACTATGGTCATAACTTTCCCCAAAGACAAGCAGATATGATCCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTATGGTCATAACTTTCCCCAAAGACAAGCAGATATGATCCTGAA  300

seq1  TATTCATGAAGTTATGGAAATTATGATAAACATATACATAATGAGTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATGAAGTTATGGAAATTATGATAAACATATACATAATGAGTGAGG  350

seq1  CATGCTCCAAAGATTTGCCTCATGTTACATGCTAAAGGACATTTTGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCCAAAGATTTGCCTCATGTTACATGCTAAAGGACATTTTGATCT  400

seq1  GAGACTAGAACATCCCGCCCTGTGTAAAAACTGTAACGAGCACCAGAAA-  449
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAGACTAGAACATCCCGCCCTGTGTAAAAACTGTAACGAGCACCAGAAAA  450

seq1  -GAACCTATTATCCCTTTTTTGCTCGACTGGAG-AGTTATT-ATGTCCTG  496
        ||| ||||||||||||||||||||||||||| ||||||| ||||||||
seq2  GAAACTTATTATCCCTTTTTTGCTCGACTGGAGAAGTTATTAATGTCCTG  500

seq1  GGGCTCT-GGTCACTTGTACTGAAGGTAATATTTTCTGATTTTCTCAGGA  545
      ||||||| ||||| | |||||||||| ||||||||||   ||||||||||
seq2  GGGCTCTGGGTCATTGGTACTGAAGGAAATATTTTCTTGATTTCTCAGGA  550

seq1  ACAGGACTGGTATTTTATTGATAGTATTAGGT  577
      ||||||||||||||||||||  ||||||||||
seq2  ACAGGACTGGTATTTTATTGGAAGTATTAGGT  582