BAC Information

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BAC

Clone NameB6Ng01-100B11
Chromosome7 (Build37)
Map Location 108,894,057 - 109,043,730
singlet/doubletdoublet
Overlap geneClpb, Phox2a, Inppl1, Folr2, Folr1
Upstream geneB930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b
Downstream gene3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100B11.bB6Ng01-100B11.g
ACCDH909692DH909693
length1,1061,085
definitionDH909692|Mus musculus domesticus DNA, BAC clone: B6Ng01-100B11, 5' end.DH909693|Mus musculus domesticus DNA, BAC clone: B6Ng01-100B11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,894,057 - 108,895,169)(109,042,644 - 109,043,730)
sequence
gaattcaaactttctgtcttactcagtcctcataaaatccatagcagttg
gcagtagtacagcagccaccagcagacgtagcaaccagccacagatgata
ctcctgctccagctagtggggggaagtgcttctcctcttctcacttctgt
gaagatgggtcaagaccagccaagagtctaggggctcttgcttacatgaa
caagggcatgatcacacacttgccatcagaaaggctcctccagcagaccg
aacagctctcttcagtcagcatcaaaatatagctcctgagaagacaggtt
ttcctggcaagtaagtgcatctgtgctgggccctctcctggtgttagcaa
agtggaggcagtgtgtaacgatagccttcagtgggggggatccttgcagg
aagacaggctgaaggctatgggagcacagatggtggtacccaccttttgc
tgagtactagcccatcctaaaacagcctttgggagggcagtcaggaaacc
tttctggaaaagatgacagattcagacttagaagatggagtcagtggagc
caggggactccctattccagatgcaggagagggaaattcttgggaattgg
aagagctcatatgagggtctttcccattcagagcatgtgtgattatgtta
aatcaaaggtggattctagagcaaagaagagctactccctaggcaccagt
gaaccaggcctctctcaccaacacccctttcactatcttcacctggggtg
aagagatctcagccagccacagctgtaccaaccagcaccagcaccatgca
tgaccaaccacccctaccctacttttctgggcccgatttcctattgacag
atccccctgattctgaaggaatttctagacaaattggttaagaggtggga
gttaataaaaatttgaaaaattgaggcctgtcactccactaaactttttt
caataccactgacagaaacatatttccccatgagtgaccttcccagcttg
tacggcaggccagccgctctgccaggaagctggctgctatttatcaatat
ataagctgggacataatctgaacaggagaggaaggaggtcctgcacctac
tgccta
gaattctctgtctttacagaaattacaggctggttgccataaccatccag
caatcatgtgggttctgaggacccaaacaccaatcctggcttcttttaca
acaagcactttaacccctaaggtatctccccaggcctgtacattctttgt
ctacgctgtttcttctgtaactagcatgataatctgcctggttttcctcc
tgttcttggctctggtgaagagtgatgagatagaactgttcaagaggttc
cgtatgtgcttcctatcaaatctgattgtatggcccaagaggtcagcttc
agcttcaaacgttttcaaacgttagcaagctctgcttattaaaattgtag
cactcagggacctgagacaagaggatgtgaagttcaagattagactgggc
tatgtagcaagctcaatgccagcctgaaatgtataagcccctgtctctca
caaaaacaggtgcaaattttaaaaataaaaataacggacagtgagatagt
tcagtgggtagaggcacttgctaacaaaccaaggacccaacttcaatccc
tggacccacatggtagaaagagaaagctgcctctcacaagttgtcttgtg
acctgcatgtgcacactgtagcagttctctgctgccttgcacaccaaata
aatgtgcatcagaaaaaaattgttaactagatgtagtgacaatgttggtt
tctttaaaaacacagaaatattgtaagaatcttttcctggggtttgcaag
tatggcatcttggaagtgaagcggcacatgccccgcccccacgcccaacc
cccagcatttagaaaggcagaggtaagagaatatctgtgaattataggcc
agcaaggctacataaagagaccctgtcccaaaatagaaaataattgaacc
cacaaaaccaaattatatgtgcatcactctgagcagtgaatttacatcag
tgaacaaatagaccctcctgttgtggcagcttttgttccagtggggagaa
caataagaagtacaataaatataatacagttttaagatcggagtaaatac
ttagaataaataattgaagggtaggggggttggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_108894057_108895169
seq2: B6Ng01-100B11.b_43_1148

seq1  GAATTCAAACTTTCTGTCTTACTCAGTCCTCATAAAATCCATAGCAGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTTTCTGTCTTACTCAGTCCTCATAAAATCCATAGCAGTTG  50

seq1  GCAGTAGTACAGCAGCCACCAGCAGACGTAGCAACCAGCCACAGATGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGTACAGCAGCCACCAGCAGACGTAGCAACCAGCCACAGATGATA  100

seq1  CTCCTGCTCCAGCTAGTGGGGGGAAGTGCTTCTCCTCTTCTCACTTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTCCAGCTAGTGGGGGGAAGTGCTTCTCCTCTTCTCACTTCTGT  150

seq1  GAAGATGGGTCAAGACCAGCCAAGAGTCTAGGGGCTCTTGCTTACATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGGGTCAAGACCAGCCAAGAGTCTAGGGGCTCTTGCTTACATGAA  200

seq1  CAAGGGCATGATCACACACTTGCCATCAGAAAGGCTCCTCCAGCAGACCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCATGATCACACACTTGCCATCAGAAAGGCTCCTCCAGCAGACCG  250

seq1  AACAGCTCTCTTCAGTCAGCATCAAAATATAGCTCCTGAGAAGACAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTCTCTTCAGTCAGCATCAAAATATAGCTCCTGAGAAGACAGGTT  300

seq1  TTCCTGGCAAGTAAGTGCATCTGTGCTGGGCCCTCTCCTGGTGTTAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGCAAGTAAGTGCATCTGTGCTGGGCCCTCTCCTGGTGTTAGCAA  350

seq1  AGTGGAGGCAGTGTGTAACGATAGCCTTCAGTGGGGGGGATCCTTGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGGCAGTGTGTAACGATAGCCTTCAGTGGGGGGGATCCTTGCAGG  400

seq1  AAGACAGGCTGAAGGCTATGGGAGCACAGATGGTGGTACCCACCTTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGCTGAAGGCTATGGGAGCACAGATGGTGGTACCCACCTTTTGC  450

seq1  TGAGTACTAGCCCATCCTAAAACAGCCTTTGGGAGGGCAGTCAGGAAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACTAGCCCATCCTAAAACAGCCTTTGGGAGGGCAGTCAGGAAACC  500

seq1  TTTCTGGAAAAGATGACAGATTCAGACTTAGAAGATGGAGTCAGTGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGAAAAGATGACAGATTCAGACTTAGAAGATGGAGTCAGTGGAGC  550

seq1  CAGGGGACTCCCTATTCCAGATGCAGGAGAGGGAAATTCTTGGGAATTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGACTCCCTATTCCAGATGCAGGAGAGGGAAATTCTTGGGAATTGG  600

seq1  AAGAGCTCATATGAGGGTCTTTCCCATTCAGAGCATGTGTGATTATGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTCATATGAGGGTCTTTCCCATTCAGAGCATGTGTGATTATGTTA  650

seq1  AATCAAAGGTGGATTCTAGAGCAAAGAAGAGCTACTCCCTAGGCACCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAGGTGGATTCTAGAGCAAAGAAGAGCTACTCCCTAGGCACCAGT  700

seq1  GAACCAGGCCTCTCTCACCAACACCCCTTTCACTATCTTCACCT-GGGTG  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAACCAGGCCTCTCTCACCAACACCCCTTTCACTATCTTCACCTGGGGTG  750

seq1  AAGAGATCTCAGCCAGCCACAGCTGTACCAACCAGCACCAGCACCATGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATCTCAGCCAGCCACAGCTGTACCAACCAGCACCAGCACCATGCA  800

seq1  TGACCAACCACCCCTACCCTAC-TTTCTGGGCCCGA-TTCCTATTGACAG  847
      |||||||||||||||||||||| ||||||||||||| |||||||||||||
seq2  TGACCAACCACCCCTACCCTACTTTTCTGGGCCCGATTTCCTATTGACAG  850

seq1  ATCCCCCAGAATCTGAAGGAA-TTCAAGACAAA-TGGTTAAGAGGATGGA  895
      ||||||| || |||||||||| ||| ||||||| |||||||||||  |||
seq2  ATCCCCCTGATTCTGAAGGAATTTCTAGACAAATTGGTTAAGAGGTGGGA  900

seq1  GTTAAT-AAAATTTGAAAAATTGAGGCCTGTCACTCCACTAAACTTTTTT  944
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAAAAATTTGAAAAATTGAGGCCTGTCACTCCACTAAACTTTTTT  950

seq1  CAATACCACTGACAGAAACATATTTCCCCAATGAGTGACCTTCCACAGC-  993
      ||||||||||||||||||||||||||||| |||||||||||||| |||| 
seq2  CAATACCACTGACAGAAACATATTTCCCC-ATGAGTGACCTTCC-CAGCT  998

seq1  TGTAGCGGGCAGGCGCAGCCGCGCTGCCAGGAAGCTGGGCTGCTATTTAT  1043
      ||||   ||||||| ||||||| ||||||||||||| |||||||||||||
seq2  TGTA--CGGCAGGC-CAGCCGCTCTGCCAGGAAGCT-GGCTGCTATTTAT  1044

seq1  CAAATATTATAAGCTGGGACAACTAATCTGGAGCAGGAGAGGAAGGAGGG  1093
      | |||| ||||||||||||||  |||||| || ||||||||||||||  |
seq2  C-AATA-TATAAGCTGGGACA--TAATCT-GAACAGGAGAGGAAGGA--G  1087

seq1  GTCCTGCACCATACTGCCTA  1113
      |||||||||| |||||||||
seq2  GTCCTGCACC-TACTGCCTA  1106

seq1: chr7_109042644_109043730
seq2: B6Ng01-100B11.g_70_1154 (reverse)

seq1  TCCCAA-CCCCCTA-CCTACAATATTTTATTCTAAGTATTTACTCCGATC  48
      |||||| ||||||| ||| ||||  |||||||||||||||||||||||||
seq2  TCCCAACCCCCCTACCCTTCAATTATTTATTCTAAGTATTTACTCCGATC  50

seq1  TTAAAACTGTTATTTATATTATTTGTAACTTCTTTATTGTTTCTCTCACT  98
      ||||||||||   |||||||  |||| ||||| ||||||||   | ||||
seq2  TTAAAACTGT--ATTATATTTATTGT-ACTTC-TTATTGTTCTCCCCACT  96

seq1  GGAACAAAAGCTGCCACCACAGGAGGGTCTATTTGTTCACTGATGTATAT  148
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  GGAACAAAAGCTGCCACAACAGGAGGGTCTATTTGTTCACTGATGTAAAT  146

seq1  TCACTGCTCAGAAGTGATGCACATAT-ATTTGGTTTTGTGGGTTCATTTA  197
      ||||||||||| |||||||||||||| ||||||||||||||||||| |||
seq2  TCACTGCTCAG-AGTGATGCACATATAATTTGGTTTTGTGGGTTCAATTA  195

seq1  TTTTCTATTTTGGGACAGGGTCTCTTTATGTAGCCTTGCTGGCCTATAAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATTTTGGGACAGGGTCTCTTTATGTAGCCTTGCTGGCCTATAAT  245

seq1  TCACAGATATTCTCTTACCTCTGCC-TTCTAAATGCTGGGGGTTGGGCGT  296
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCACAGATATTCTCTTACCTCTGCCTTTCTAAATGCTGGGGGTTGGGCGT  295

seq1  GGGGGCGGGGCATGTGCCGCTTCACCTTCCAAGATGCCATACTTGCAAAC  346
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGGGGCGGGGCATGTGCCGCTTCA-CTTCCAAGATGCCATACTTGCAAAC  344

seq1  CCCAGGAAAAGATTCTTACAATATTTCTGTGTTTTTAAAGAAACCAACAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAAAAGATTCTTACAATATTTCTGTGTTTTTAAAGAAACCAACAT  394

seq1  TGTCACTACATCTAGTTAACAATTTTTTTCTGATGCACATTTATTTGGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTACATCTAGTTAACAATTTTTTTCTGATGCACATTTATTTGGTG  444

seq1  TGCAAGGCAGCAGAGAACTGCTACAGTGTGCACATGCAGGTCACAAGACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGCAGCAGAGAACTGCTACAGTGTGCACATGCAGGTCACAAGACA  494

seq1  ACTTGTGAGAGGCAGCTTTCTCTTTCTACCATGTGGGTCCAGGGATTGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGAGAGGCAGCTTTCTCTTTCTACCATGTGGGTCCAGGGATTGAA  544

seq1  GTTGGGTCCTTGGTTTGTTAGCAAGTGCCTCTACCCACTGAACTATCTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTCCTTGGTTTGTTAGCAAGTGCCTCTACCCACTGAACTATCTCA  594

seq1  CTGTCCGTTATTTTTATTTTTAAAATTTGCACCTGTTTTTGTGAGAGACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCGTTATTTTTATTTTTAAAATTTGCACCTGTTTTTGTGAGAGACA  644

seq1  GGGGCTTATACATTTCAGGCTGGCATTGAGCTTGCTACATAGCCCAGTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTATACATTTCAGGCTGGCATTGAGCTTGCTACATAGCCCAGTCT  694

seq1  AATCTTGAACTTCACATCCTCTTGTCTCAGGTCCCTGAGTGCTACAATTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGAACTTCACATCCTCTTGTCTCAGGTCCCTGAGTGCTACAATTT  744

seq1  TAATAAGCAGAGCTTGCTAACGTTTGAAAACGTTTGAAGCTGAAGCTGAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGCAGAGCTTGCTAACGTTTGAAAACGTTTGAAGCTGAAGCTGAC  794

seq1  CTCTTGGGCCATACAATCAGATTTGATAGGAAGCACATACGGAACCTCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGGCCATACAATCAGATTTGATAGGAAGCACATACGGAACCTCTT  844

seq1  GAACAGTTCTATCTCATCACTCTTCACCAGAGCCAAGAACAGGAGGAAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTTCTATCTCATCACTCTTCACCAGAGCCAAGAACAGGAGGAAAA  894

seq1  CCAGGCAGATTATCATGCTAGTTACAGAAGAAACAGCGTAGACAAAGAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGATTATCATGCTAGTTACAGAAGAAACAGCGTAGACAAAGAAT  944

seq1  GTACAGGCCTGGGGAGATACCTTAGGGGTTAAAGTGCTTGTTGTAAAAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGCCTGGGGAGATACCTTAGGGGTTAAAGTGCTTGTTGTAAAAGA  994

seq1  AGCCAGGATTGGTGTTTGGGTCCTCAGAACCCACATGATTGCTGGATGGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGATTGGTGTTTGGGTCCTCAGAACCCACATGATTGCTGGATGGT  1044

seq1  TATGGCAACCAGCCTGTAATTTCTGTAAAGACAGAGAATTC  1087
      |||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCAACCAGCCTGTAATTTCTGTAAAGACAGAGAATTC  1085