BAC Information

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BAC

Clone NameB6Ng01-100C24
Chromosome7 (Build37)
Map Location 54,124,223 - 54,258,357
singlet/doubletdoublet
Overlap geneLdhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1
Upstream geneKdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha
Downstream geneLOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729, Mrgpra3, Mrgprc1-ps, LOC100040314, Mrgprc3-ps, EG435977, EG619792, Mrgprc7-ps, Mrgpra18-ps, EG435978, Mrgprc2-ps, Mrgpra4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100C24.bB6Ng01-100C24.g
ACCDH909758DH909759
length1,1011,116
definitionDH909758|Mus musculus domesticus DNA, BAC clone: B6Ng01-100C24, 5' end.DH909759|Mus musculus domesticus DNA, BAC clone: B6Ng01-100C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,124,223 - 54,125,327)(54,257,242 - 54,258,357)
sequence
gaattccatagcagcatggcgcacgcgtacatgcacacatacacacatat
gggcacatacacacaaataagaatatggatggtatgtctaagagatgctt
agagaacttgctaatcaaaaaagtatctaataatgtaagcaaacattgtg
tcagtgtgttgaatatagtaagtaaaacaacttgcagactggtaattaca
cttactataagtagtttattttctcgtatgaagatctaatttatttgtaa
tatcaaataaagcatagttccttctaatatggttgcttataataattaga
ggtacatctcttcttgccattagattcctaaaagagacatggaagttatc
agatgtaagctgctaattcatttgggtgttctgaaaagccagagtgttgg
ggagggagttccacggtgggtctgccatgggttcactttccagcaacacc
aaaaggcaaaataacagaaaccagagagctactgagtttcttgtcccgga
tctttctgacaaatagaactgtgggttgaagggactggcagagtaagagg
cagctgtgtgaaagctggcaagtggcaccaagccttgtttgacttctgta
agatgctacagtgtggggtctctgtttccaaatccaggataggaggtgac
tacttcaaacccaacagcatgggatagaagcttacagagtcaagatgcag
tggggggcagtgctaatggaaagaccatcttctatttccttcttagatta
caatgtatctgccaactccaaactggttattatcacagctggtgcaagaa
tggtgtctggagaaactcgccttgacctgctccaacgtaatgtcgctatc
atgaaagccattgttccgggcattgtccaaaacagtccggactgtaaaat
aattatcgtcactaacccaggtgaggtccccctgccctttctgagtaata
attgggttcatagtattcattataaacctcacagaggttgtactcatggt
taataagtcttgccatgccataagttgatgatgccatcacagtagatctg
gatatctctgtctttctcgaggctgtgtgcctcatttgtagtccaatccc
t
gaattctatttaagattgaagtctgagctgcagaaaaagtgttggagtta
gaaagttaaagtgtgcaaatatgtttgttttcagctacaaagcttatacc
taagcaccaggaaagcccagttaccccttttaaagacaaagacgtattca
tttaaagggtgactttattagatttaaatgaaacacaaaggattgaacct
caacacgctggcaagttctctatcactgagctgtgccctgactctaacca
agtgttttataaatcctttaatgctttgttttggtgttaacacatagcca
ccgtgaacggatgctctgggagttttcttctcactgtcctttctgacatc
ccgctgagctggcttaatgcagagagctcctgcctgccttcgttccctcg
ctaatgccttgagaaggtgttgaaaacttggtgtgttgattaaagttaat
gtattatttggctactctaatcaatagttaagtgatataaaatcaccaga
agatatctgttttctacaacagcctcacttctcctcaggagcagtttgga
ggtggagcatgctggttctgattaagcattcttgctgagcaaggtttcca
gactgcaggctgcttcttaagccgctcgaaactggatagtttcaatgcaa
ggagggtttttaaatagcttcatgttttctgaacccatgggctttagaat
ttcaaatcttggcaaactgtgataccatattaaatgatagaagtgcggtg
attgtggatagttcttcagggtccaggggtgatgagactggctttgcagg
gtgaagaaacttgtccagcagcttttcatgaagcctagacaatgaagcag
ccttgggccttgaatcagagtcagaattgatgggtacatcttgatgtgct
gctgctatggccgtgcatggccatctgatgcagagacatgccaaatgacg
taaagagatacaacgtgctctgaccacagactttttttttttaaaaacat
cataattgtatggtgagtgggagaaatcttacaaaatctttctaatcaaa
acattatttggtctgcttagagccctttttagaggtcttatggagctcca
gtggttaaaatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_54124223_54125327
seq2: B6Ng01-100C24.b_42_1142

seq1  GAATTCCATAGCAGCATGGCGCACGCGTACATGCACACATACACACATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGCAGCATGGCGCACGCGTACATGCACACATACACACATAT  50

seq1  GGGCACATACACACAAATAAGAATATGGATGGTATGTCTAAGAGATGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACATACACACAAATAAGAATATGGATGGTATGTCTAAGAGATGCTT  100

seq1  AGAGAACTTGCTAATCAAAAAAGTATCTAATAATGTAAGCAAACATTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACTTGCTAATCAAAAAAGTATCTAATAATGTAAGCAAACATTGTG  150

seq1  TCAGTGTGTTGAATATAGTAAGTAAAACAACTTGCAGACTGGTAATTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTGTTGAATATAGTAAGTAAAACAACTTGCAGACTGGTAATTACA  200

seq1  CTTACTATAAGTAGTTTATTTTCTCGTATGAAGATCTAATTTATTTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTATAAGTAGTTTATTTTCTCGTATGAAGATCTAATTTATTTGTAA  250

seq1  TATCAAATAAAGCATAGTTCCTTCTAATATGGTTGCTTATAATAATTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATAAAGCATAGTTCCTTCTAATATGGTTGCTTATAATAATTAGA  300

seq1  GGTACATCTCTTCTTGCCATTAGATTCCTAAAAGAGACATGGAAGTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATCTCTTCTTGCCATTAGATTCCTAAAAGAGACATGGAAGTTATC  350

seq1  AGATGTAAGCTGCTAATTCATTTGGGTGTTCTGAAAAGCCAGAGTGTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAAGCTGCTAATTCATTTGGGTGTTCTGAAAAGCCAGAGTGTTGG  400

seq1  GGAGGGAGTTCCACGGTGGGTCTGCCATGGGTTCACTTTCCAGCAACACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGTTCCACGGTGGGTCTGCCATGGGTTCACTTTCCAGCAACACC  450

seq1  AAAAGGCAAAATAACAGAAACCAGAGAGCTACTGAGTTTCTTGTCCCGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCAAAATAACAGAAACCAGAGAGCTACTGAGTTTCTTGTCCCGGA  500

seq1  TCTTTCTGACAAATAGAACTGTGGGTTGAAGGGACTGGCAGAGTAAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGACAAATAGAACTGTGGGTTGAAGGGACTGGCAGAGTAAGAGG  550

seq1  CAGCTGTGTGAAAGCTGGCAAGTGGCACCAAGCCTTGTTTGACTTCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGTGAAAGCTGGCAAGTGGCACCAAGCCTTGTTTGACTTCTGTA  600

seq1  AGATGCTACAGTGTGGGGTCTCTGTTTCCAAATCCAGGATAGGAGGTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTACAGTGTGGGGTCTCTGTTTCCAAATCCAGGATAGGAGGTGAC  650

seq1  TACTTCAAACCCAACAGCATGGGATAGAAGCTTACAGAGTCAAGATGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAAACCCAACAGCATGGGATAGAAGCTTACAGAGTCAAGATGCAG  700

seq1  TGGGGGGCAGTGCTAATGGAAAGACCATCTTCTATTTCCTTCTTAGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGCAGTGCTAATGGAAAGACCATCTTCTATTTCCTTCTTAGATTA  750

seq1  CAATGTATCTGCCAACTCCAAACTGGTTATTATCACAGCTGGTGCAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTATCTGCCAACTCCAAACTGGTTATTATCACAGCTGGTGCAAGAA  800

seq1  TGGTGTCTGGAGAAACTCGCCTTGACCTGCTCCAACGTAATGTCGCTATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTGGAGAAACTCGCCTTGACCTGCTCCAACGTAATGTCGCTATC  850

seq1  ATGAAAGCCATTGTTCCGGGCATTGTCCAAAACAGTCCGGACTGTAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGCCATTGTTCCGGGCATTGTCCAAAACAGTCCGGACTGTAAAAT  900

seq1  AATTATCGTCACTAACCCAGGTGAGGTCCCCCTGCCCTTTCTGAGTAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCGTCACTAACCCAGGTGAGGTCCCCCTGCCCTTTCTGAGTAATA  950

seq1  ATT-GGTTCATAGTATTCAATTATAAACCTCACAGAGGTTGTACTCATGG  999
      ||| |||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTGGGTTCATAGTATTC-ATTATAAACCTCACAGAGGTTGTACTCATGG  999

seq1  TTAATAAGTC-TGCCATGCCATAAGTTTTGATAGATGCCATCACAGTAAG  1048
      |||||||||| ||||||||||||||  ||||| |||||||||||||| ||
seq2  TTAATAAGTCTTGCCATGCCATAAG--TTGAT-GATGCCATCACAGT-AG  1045

seq1  ATCTGGAATATCTCTGTCTTCTCTGAAGGGCTGTGTG-CTCATTTGTAGT  1097
      |||||| ||||||||||||| |||  | ||||||||| ||||||||||||
seq2  ATCTGG-ATATCTCTGTCTT-TCTCGA-GGCTGTGTGCCTCATTTGTAGT  1092

seq1  CC-ATCCCT  1105
      || ||||||
seq2  CCAATCCCT  1101

seq1: chr7_54257242_54258357
seq2: B6Ng01-100C24.g_68_1183 (reverse)

seq1  TATATATTTTTAACACT-GAGCTCCAT-AGACCTTTCTAAAAAGGGCTCT  48
      |||||||||| | |||| ||||||||| |||||  |||||||||||||||
seq2  TATATATTTTAACCACTGGAGCTCCATAAGACC--TCTAAAAAGGGCTCT  48

seq1  AAGCAGACCAAAATATGTTTTGA-TAG-AAGATTTTGTAAGATTTCTCCC  96
      ||||||||||||  ||||||||| ||| ||||||||||||||||||||||
seq2  AAGCAGACCAAATAATGTTTTGATTAGAAAGATTTTGTAAGATTTCTCCC  98

seq1  AACTCACCATAC-AGTATGATG-TTTTAAAAAAAAAAAGTCTGTGGTCAG  144
       ||||||||||| | ||||||| |||||||||||||||||||||||||||
seq2  -ACTCACCATACAATTATGATGTTTTTAAAAAAAAAAAGTCTGTGGTCAG  147

seq1  AGCACGTTGTATTCTCTATACGTCATTTGGCATGTCTCCTGCATCAGATG  194
      ||||||||||| ||||| ||||||||||||||||||| ||||||||||||
seq2  AGCACGTTGTA-TCTCTTTACGTCATTTGGCATGTCT-CTGCATCAGATG  195

seq1  GCCATGCACGGCCATAGCAGCAGCACATCAAGATGTACCCATCAATTCTG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCACGGCCATAGCAGCAGCACATCAAGATGTACCCATCAATTCTG  245

seq1  ACTCCTGATTCAAGGCCCAAGGCTGCTTCATTGTCTAGGCTTCATGAAAA  294
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACT-CTGATTCAAGGCCCAAGGCTGCTTCATTGTCTAGGCTTCATGAAAA  294

seq1  GCTGCTGGACAAGTTTCTTCACCCTGCAAAGCCAGTCTCATCACCCCTGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGGACAAGTTTCTTCACCCTGCAAAGCCAGTCTCATCACCCCTGG  344

seq1  ACCCTGAAGAACTATCCACAATCACCGCACTTCTATCATTTAATATGGTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAAGAACTATCCACAATCACCGCACTTCTATCATTTAATATGGTA  394

seq1  TCACAGTTTGCCAAGATTTGAAATTCTAAAGCCCATGGGTTCAGAAAACA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTTTGCCAAGATTTGAAATTCTAAAGCCCATGGGTTCAGAAAACA  444

seq1  TGAAGCTATTTAAAAACCCTCCTTGCATTGAAACTATCCAGTTTCGAGCG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTATTTAAAAACCCTCCTTGCATTGAAACTATCCAGTTTCGAGCG  494

seq1  GCTTAAGAAGCAGCCTGCAGTCTGGAAACCTTGCTCAGCAAGAATGCTTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGAAGCAGCCTGCAGTCTGGAAACCTTGCTCAGCAAGAATGCTTA  544

seq1  ATCAGAACCAGCATGCTCCACCTCCAAACTGCTCCTGAGGAGAAGTGAGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAACCAGCATGCTCCACCTCCAAACTGCTCCTGAGGAGAAGTGAGG  594

seq1  CTGTTGTAGAAAACAGATATCTTCTGGTGATTTTATATCACTTAACTATT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTAGAAAACAGATATCTTCTGGTGATTTTATATCACTTAACTATT  644

seq1  GATTAGAGTAGCCAAATAATACATTAACTTTAATCAACACACCAAGTTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAGTAGCCAAATAATACATTAACTTTAATCAACACACCAAGTTTT  694

seq1  CAACACCTTCTCAAGGCATTAGCGAGGGAACGAAGGCAGGCAGGAGCTCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCTTCTCAAGGCATTAGCGAGGGAACGAAGGCAGGCAGGAGCTCT  744

seq1  CTGCATTAAGCCAGCTCAGCGGGATGTCAGAAAGGACAGTGAGAAGAAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTAAGCCAGCTCAGCGGGATGTCAGAAAGGACAGTGAGAAGAAAA  794

seq1  CTCCCAGAGCATCCGTTCACGGTGGCTATGTGTTAACACCAAAACAAAGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGAGCATCCGTTCACGGTGGCTATGTGTTAACACCAAAACAAAGC  844

seq1  ATTAAAGGATTTATAAAACACTTGGTTAGAGTCAGGGCACAGCTCAGTGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGATTTATAAAACACTTGGTTAGAGTCAGGGCACAGCTCAGTGA  894

seq1  TAGAGAACTTGCCAGCGTGTTGAGGTTCAATCCTTTGTGTTTCATTTAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAACTTGCCAGCGTGTTGAGGTTCAATCCTTTGTGTTTCATTTAAA  944

seq1  TCTAATAAAGTCACCCTTTAAATGAATACGTCTTTGTCTTTAAAAGGGGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAAAGTCACCCTTTAAATGAATACGTCTTTGTCTTTAAAAGGGGT  994

seq1  AACTGGGCTTTCCTGGTGCTTAGGTATAAGCTTTGTAGCTGAAAACAAAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGCTTTCCTGGTGCTTAGGTATAAGCTTTGTAGCTGAAAACAAAC  1044

seq1  ATATTTGCACACTTTAACTTTCTAACTCCAACACTTTTTCTGCAGCTCAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGCACACTTTAACTTTCTAACTCCAACACTTTTTCTGCAGCTCAG  1094

seq1  ACTTCAATCTTAAATAGAATTC  1116
      ||||||||||||||||||||||
seq2  ACTTCAATCTTAAATAGAATTC  1116