BAC Information

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BAC

Clone NameB6Ng01-100E10
Chromosome7 (Build37)
Map Location 20,887,891 - 21,006,254
singlet/doubletdoublet
Overlap geneLOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536
Upstream geneFosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528
Downstream geneLOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559, LOC667311, LOC100043561, LOC667302, EG667292, LOC100043566, LOC100043569, EG436135, LOC100042996, EG667273, EG667268, EG667262, EG667259, LOC100043574, LOC100043576, Gm1447, LOC100043006, LOC100043583, EG435953, LOC673902, EG667240, EG435951, Gm1446, LOC381937
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100E10.bB6Ng01-100E10.g
ACCDH909820DH909821
length1,1911,095
definitionDH909820|Mus musculus domesticus DNA, BAC clone: B6Ng01-100E10, 5' end.DH909821|Mus musculus domesticus DNA, BAC clone: B6Ng01-100E10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,004,677 - 21,006,254)(20,887,891 - 20,888,534)
sequence
gaattcttgagaatcttgagaaggtatttgtgtgagatccccaagatggc
ctgtggtggctcctgctttgcctgctgctgtcagttccctttgcggctgt
acctgctcctgattttgcgattgatgaattgttgtttggctgtcttgttt
gacttctggttagagatatcatgatgatagattttggacttaccaaaacc
aacatcagaggtctacacaccttttcctctctaagttttctttactactg
agtgttggttggaaatattgtggtgaaaaatgtgctggaagggtagtaga
tagtacaatccaatgaagtacaacaaactaatgcttagatataagggtat
acagagattaacaggcagagatcagtgttataggattcactgaactgatt
aaactgaacttagaaaatacactttttcttttcggtgtgtggacatgttc
aagcacagatttgaggaaggcagagtaaaattgtaggattttgttctctc
cactaggtaggacctgggataatcatttctaagttgtgagtgctttagct
gctgagctgtattgctgattcttattatggccagtgttatgatcaagact
tggtgctgtgggattgtcagttttattgttggtagaggtctgtgaaaatg
tacatgaagagtctcagtattaatttcataactcagtgcgaatctatcct
taatatcgaacatacaaactgttggttcctattctattatttcaagctct
ttcaatatagctgatattgatgattttccgacatcccaaattggaagtga
agagttaagtgtgttggataaattttttcagtgtgggcctcgagagatgg
ctcagcaaggttggaagcctggccacatttacattggatcagagatcgat
tctgagaacctaatctttgtaggcttataacagtttgtaactccagctct
aggggtatgaccacctatctccttaagagaaggaaatccccacaaaaaat
acataaccaatacgcatgacaaaaaatgaatgctaaatattctttgttac
agaagtagtacaccaggtcagattatagttcatcactgacagctataaca
ccctgggaatttatctgggcttctagctggaatttcaggagcgaaaatta
agccttgacttactctcggaaaagtggaatgaagcatgcaa
gaattctctgccctgccttaatcacttgttgacattcctcgtcctttaag
cacgatcttatcagcttccacaacggcatggttcctgctttaagtttgcc
attctccagttccctaactaaatctcccttgagtttctcccaagagggga
tagttaaggtccctgagcacgcaaaccacggtgctatgcgatctacctct
tttacaaagccttctagtgtcttggtggcgactttcaagccacactgctt
caggaccaacggtaaggtggtcaccacagagtgggaggcccccatactgg
tcgctgtccaggcctgaccacgactgagaaccagccagcaataccactgg
tggaaatagtatgtagtcaaaagaaaaagaacgagccctgtaaaaaggaa
cagagaggcttctaacgctggagaaagttcaagacagaacgtaccttgta
gagctgtaaagtgtcccgtagttctgaacccgccccgtgaaacggggggg
ggggtctcctatcagggcctggtgatgataaattcccgggtttctcggcg
ccacttcttgcccgagttagtatctcgcaggcaagaattcactcggacaa
ccggatccttctacggcaaagcttttattgcttcaacataaggaagaccc
tgaactggaaaatggtgctgcttatatagcccgcaagcgtgacgtttcag
cacctgatgtggcgtgacagcacctgattagttgctcgcccatcacccca
ttactacgccccgagatgggcagtgactgggcgtgaatttactcttgcac
ttgcgcataaggcttgtttactagctaggcgcagtggaagccagcaccat
cttataatggcaattgctcacggcacagttctccacactggggcatatat
ccagaagatgttccaactgttataagaacacatgctccactatgttcata
gcagcctttggtttttgttctgcatcaaaaggctctgattcctttgagca
agtagagcttctgtagttgcttctttatcaatagaacattttaatatcat
gttgattcctaggttgaggatcgcttcttattaactggggagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_21004677_21006254
seq2: B6Ng01-100E10.b_46_1236 (reverse)

seq1  TTGCATGTCATTCCACTTTAGTTAGGAGATATATGCTTAGCTACCTTGGG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCCTACTGAGGTGAGAGTCAAGCACTGAACAACATAACTTTGTGCTTTCT  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGCAGTACAATCTGCTGAGCATATCGAGAATAAATAGGAAAAGAGGCA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GAAACAGGTCACACTCAGAATCCTTAAGCGATTTAAAGTTTCAGGACCAG  200
                                                        
seq2  --------------------------------------------------  0

seq1  GGAGGAACCCAGGATCCACACTGGAGATCTTCTCCTGAAAGACTTCACTC  250
                                                        
seq2  --------------------------------------------------  0

seq1  TGGGCCATGGTGAAATTGTTTTCCAGTCATCACAAACACATACCAATCAG  300
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGGAGACAATATATATCTGAACAACGAGGAGGCAAAGTTGTCACTCCA  350
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGTCAGTGGCTTTCTCAATCACAAAATTATTTTCTCAGAAGATTAAAA  400
              | || | ||  ||  ||      |||||  |||      || 
seq2  --------TTGCATGCTTCATTCCA-----CTTTTCCGAGA----GTAAG  33

seq1  TCAAGCATCTAATATTTTCAGCTACCTGAGAATGACCAAGGCTAGAAAGA  450
      |||||   || | |||||| ||| ||||| | |  |||  ||||| ||| 
seq2  TCAAG--GCTTA-ATTTTC-GCT-CCTGAAATT--CCA--GCTAG-AAGC  73

seq1  CCACAAGATAAATACCAGGGGTGGTTATAGCTGTCAGTGTGATGAAACTT  500
      ||   |||||||| ||  |||| |||||||||||||  ||||||||   |
seq2  CC---AGATAAATTCCCAGGGT-GTTATAGCTGTCA--GTGATGAA--CT  115

seq1  ATAATCTGACTTGTGGTACTTACTTCTGTGAACAAAGAATATTTTAGCAT  550
      |||||||||| ||  |||| ||||||||| ||||||||||| ||||||||
seq2  ATAATCTGACCTGGTGTAC-TACTTCTGT-AACAAAGAATA-TTTAGCAT  162

seq1  TCATTTTTTTGTTCATGCGTATTGGTTATGTATGTATTTGTGGGGATTCC  600
      |||||||||   ||||||||||||||||||||| | |||||||||||| |
seq2  TCATTTTTT--GTCATGCGTATTGGTTATGTAT-TTTTTGTGGGGATTTC  209

seq1  CTCCTCTTAAGGAGAATAGGT-GTCATACCCCTAGAGCTGGAGTTACAAA  649
      || ||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  CTTCTCTTAAGGAG-ATAGGTGGTCATACCCCTAGAGCTGGAGTTACAAA  258

seq1  CTGTTATAAGCCTACAAAGA-TAGGTTCTCAGAATCGATCTCTGATCCAA  698
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTGTTATAAGCCTACAAAGATTAGGTTCTCAGAATCGATCTCTGATCCAA  308

seq1  TGTAAATGTGGCCAGGCTTCCAACC-TGCTGAGCCATCTCTCGAGGCCCA  747
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGTAAATGTGGCCAGGCTTCCAACCTTGCTGAGCCATCTCTCGAGGCCCA  358

seq1  CACTG-AAAAATTTATCCAACACACTTAACTCTTCACTTCCAATTTGGGA  796
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAAAAATTTATCCAACACACTTAACTCTTCACTTCCAATTTGGGA  408

seq1  TGTCGG-AAATCATCAATATCAGCTATATTGAAAGAGCTTGAAATAATAG  845
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGGAAAATCATCAATATCAGCTATATTGAAAGAGCTTGAAATAATAG  458

seq1  AATAGGAACCAACAGTTTGTATGTTCGATATTAAGGATAGATTCGCACTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAACCAACAGTTTGTATGTTCGATATTAAGGATAGATTCGCACTG  508

seq1  AGTTATGAAATTAATACTGAGACTCTTCATGTACATTTTCACAGACCTCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGAAATTAATACTGAGACTCTTCATGTACATTTTCACAGACCTCT  558

seq1  ACCAACAATAAAACTGACAATCCCACAGCACCAAGTCTTGATCATAACAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAATAAAACTGACAATCCCACAGCACCAAGTCTTGATCATAACAC  608

seq1  TGGCCATAATAAGAATCAGCAATACAGCTCAGCAGCTAAAGCACTCACAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATAATAAGAATCAGCAATACAGCTCAGCAGCTAAAGCACTCACAA  658

seq1  CTTAGAAATGATTATCCCAGGTCCTACCTAGTGGAGAGAACAAAATCCTA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAATGATTATCCCAGGTCCTACCTAGTGGAGAGAACAAAATCCTA  708

seq1  CAATTTTACTCTGCCTTCCTCAAATCTGTGCTTGAACATGTCCACACACC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTACTCTGCCTTCCTCAAATCTGTGCTTGAACATGTCCACACACC  758

seq1  GAAAAGAAAAAGTGTATTTTCTAAGTTCAGTTTAATCAGTTCAGTGAATC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAAAGTGTATTTTCTAAGTTCAGTTTAATCAGTTCAGTGAATC  808

seq1  CTATAACACTGATCTCTGCCTGTTAATCTCTGTATACCCTTATATCTAAG  1245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACACTGATCTCTGCCTGTTAATCTCTGTATACCCTTATATCTAAG  858

seq1  CATTAGTTTGTTGTACTTCATTGGATTGTACTATCTACTACCCTTCCAGC  1295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTTTGTTGTACTTCATTGGATTGTACTATCTACTACCCTTCCAGC  908

seq1  ACATTTTTCACCACAATATTTCCAACCAACACTCAGTAGTAAAGAAAACT  1345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTCACCACAATATTTCCAACCAACACTCAGTAGTAAAGAAAACT  958

seq1  TAGAGAGGAAAAGGTGTGTAGACCTCTGATGTTGGTTTTGGTAAGTCCAA  1395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGGAAAAGGTGTGTAGACCTCTGATGTTGGTTTTGGTAAGTCCAA  1008

seq1  AATCTATCATCATGATATCTCTAACCAGAAGTCAAACAAGACAGCCAAAC  1445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATCATCATGATATCTCTAACCAGAAGTCAAACAAGACAGCCAAAC  1058

seq1  AACAATTCATCAATCGCAAAATCAGGAGCAGGTACAGCCGCAAAGGGAAC  1495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTCATCAATCGCAAAATCAGGAGCAGGTACAGCCGCAAAGGGAAC  1108

seq1  TGACAGCAGCAGGCAAAGCAGGAGCCACCACAGGCCATCTTGGGGATCTC  1545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCAGCAGGCAAAGCAGGAGCCACCACAGGCCATCTTGGGGATCTC  1158

seq1  ACACAAATACCTTCTCAAGATTCTCAAGAATTC  1578
      |||||||||||||||||||||||||||||||||
seq2  ACACAAATACCTTCTCAAGATTCTCAAGAATTC  1191

seq1: chr7_20887891_20888534
seq2: B6Ng01-100E10.g_526_1161

seq1  AGTGTCCCGTAGTTCTGAACCCGCCCCGTGAAACGGGGGGGGGGGTCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCCGTAGTTCTGAACCCGCCCCGTGAAACGGGGGGGGGGGTCTCC  50

seq1  TATCAGGGCCTGGTGATGATAAATTCCCGGGTTTCTCGGCGCCACTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGGCCTGGTGATGATAAATTCCCGGGTTTCTCGGCGCCACTTCTT  100

seq1  GCCCGAGTTAGTATCTCGCAGGCAAGAATTCACTCGGACAACCGGATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGAGTTAGTATCTCGCAGGCAAGAATTCACTCGGACAACCGGATCCT  150

seq1  TCTACGGCAAAGCTTTTATTGCTTCAACATAAGGAAGACCCTGAACTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACGGCAAAGCTTTTATTGCTTCAACATAAGGAAGACCCTGAACTGGA  200

seq1  AAATGGTGCTGCTTATATAGCCCGCAAGCGTGACGTTTCAGCACCTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTGCTGCTTATATAGCCCGCAAGCGTGACGTTTCAGCACCTGATG  250

seq1  TGGCGTGACAGCACCTGATTAGTTGCTCGCCCATCACCCCATTACTACGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTGACAGCACCTGATTAGTTGCTCGCCCATCACCCCATTACTACGC  300

seq1  CCCGAGATGGGCAGTGACTGGGCGTGAATTTACTCTTGCACTTGCGCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGATGGGCAGTGACTGGGCGTGAATTTACTCTTGCACTTGCGCATA  350

seq1  AGGCTTGTTTACTAGCTAGGCGCAGTGGAAGCCAGCACCATCTTATAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGTTTACTAGCTAGGCGCAGTGGAAGCCAGCACCATCTTATAATG  400

seq1  GCAATTGCTCACGGCACAGTTCTCCACACT-GGGCATATATCCAGAAGAT  449
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCAATTGCTCACGGCACAGTTCTCCACACTGGGGCATATATCCAGAAGAT  450

seq1  GTTCCAACTGTTAATAAGAACACATGCTCCACTATGTTCATAGCAGCCTT  499
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTCCAACTGTT-ATAAGAACACATGCTCCACTATGTTCATAGCAGCCTT  499

seq1  TGGTTTTTGTTCTGCATCAAAAGGCTCTGATTCCTTTGAGCAAGTAAGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGTTTTTGTTCTGCATCAAAAGGCTCTGATTCCTTTGAGCAAGT-AGAG  548

seq1  CTTTCTGTAGTTGCTCCTTTATCAATAGAACATTTT-ATATCATGTTGTA  598
      | ||||||||||||| |||||||||||||||||||| |||||||||||  
seq2  C-TTCTGTAGTTGCTTCTTTATCAATAGAACATTTTAATATCATGTTG--  595

seq1  TTTCCTAGGTTTTGAAGATCAGCTTTTCTTATACACTGGGGAGATT  644
       ||||||||  |||| |||| ||  |||||||  ||||||||||||
seq2  ATTCCTAGG--TTGAGGATC-GC--TTCTTATTAACTGGGGAGATT  636