BAC Information

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BAC

Clone NameB6Ng01-100H19
Chromosome7 (Build37)
Map Location 70,884,945 - 70,885,945
singlet/doubletsinglet
Overlap geneOtud7a
Upstream geneLOC384631, LOC622243, EG622251, Chrna7, LOC545971, LOC100041386
Downstream geneLOC665083, Klf13, E030018B13Rik, Trpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100H19.bB6Ng01-100H19.g
ACCDH909972DH909973
length1,0041,242
definitionDH909972|Mus musculus domesticus DNA, BAC clone: B6Ng01-100H19, 5' end.DH909973|Mus musculus domesticus DNA, BAC clone: B6Ng01-100H19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtacattgtactattagtccaatggcaagggcagtagttaaag
aaagagtgattagaactggccttggcagtcagatgtgatgtgggggtacc
cagagacaaactagcatggacaaaggtgatgataggccactgtcgagtgc
tgatgacctagcagagcaggcccatgtatcctgcccttcctcaaggattt
gtgctagcatcttacctccactaggctgagctcccagcttggcatttcct
ggttatggagcagcctgagaagcaggtatagcggaggaaaaagaactgtc
tgtgtttccagacagttccactgggaatcttacctcttgcttgcagtgcc
catccatccagggagaggcccagatacagaaactggaccttcaccaacag
gtcgtatctggggacactacagctggctgctaggctctcagccagatgag
tggatgtcagaggttcacagctgctgtctgtgggtgcaggctctacctaa
tggtcactcacactctgtccagttcaagattcaagagtagagtgtgctaa
tgccctgacagtggcccccagcagctaactcagtggtgcaatcctgtttc
caaacctgctgcaactagagttcaaattagagcctcccagacagctgcag
agctctgggcccacccagccttccaaacctacagcttaaccagcagctct
ttgcctgggctatgctggatgctaccccagtgccatctcacttgaatgaa
gtgtgacactccctacaaactccccgtcaatcctcaaagatgaggttccg
gagctggaaagatgactcggttgccaagaacacttctttttgcagaggac
ccatatttagttcccagcttttttgtagctcacaatcacctgtaactcca
ggcccagggaaaactgacaccctcttctggcttcgaaggtaccaggcaat
catgagttagatacgtagacatgcagatattcacaacatgcactataaat
taaa
gaattcctagaacagaataaaaaagaaaatacagcatgccaaaatctatg
ggacaaaatgaaggcagttctaagaggaaaatttatagctctaagtgctt
acattaaaaaaaaagttcaagagctctcaaactaataatttcatgatgat
acacttggaagtttcagacaaacaagaagaaccaacacacagaaagagta
aacagaaaggaataattaaactcaaggctgaaattaataaaatagaataa
aacccaaatcatacaaagaaccaattagataaagagtttgttctttaaaa
agatttagaagactaacaaacctttaggcaaattaaccaaagagagcaga
cctaaactaataatattagagatgaaagtgagatgctataacagatacca
ctattataatagacattctaacatcattataccagaatcataagtacata
ctctacaaatatatatttcagcaaagtggataatctaaaagaaatcaatt
tattttgagatacataagttctccaaaactaaatcaagatgaaataaata
atttaaatagactcatgacaaccaattagatagaaacaataattaaaact
ttcctaactgagggagaattagcttttcccaggcatgagccctgttcctg
gttgtccagtacaaagtaatcagccctgaaactatatctacaaaaacaat
gaaaacaaacccaacagcttgtatttatatttttatgtatgtatgtgtgt
atgtgtatgtatgtacatgttcgtatcagaaataaccagaggaaaagagg
ctatcagtttgaaagtggaggtgcatggaagaggttggagggagaacatc
tgggagaggctgggagggagaaagagggtaaagtgatgtaattctatttt
tattaaaatgtattaaaaaataaaactctctcaacttaaacacaacaaaa
acaaactccacagggctagagagattcagtgcaggctctacaaattcctc
aaactaaacaacacaaattaacataccctccaattatcttcaaatgaagt
aaatttcaaattctcttacaaggcagcacccactctgaatcaaggctgac
aagaatcatacgaaagcctcagggctggaggcatggttcatggttgaaaa
tcccttgcgttcctgtccgaagaggaatccctaatacgtttccgccatgc
ccatcgggagagtcaactcacatcctgtcgacactaccggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_70884945_70885945
seq2: B6Ng01-100H19.b_43_1046

seq1  GAATTCAGTACATTGTACTATTAGTCCAATGGCAAGGGCAGTAGTTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACATTGTACTATTAGTCCAATGGCAAGGGCAGTAGTTAAAG  50

seq1  AAAGAGTGATTAGAACTGGCCTTGGCAGTCAGATGTGATGTGGGGGTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTGATTAGAACTGGCCTTGGCAGTCAGATGTGATGTGGGGGTACC  100

seq1  CAGAGACAAACTAGCATGGACAAAGGTGATGATAGGCCACTGTCGAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAAACTAGCATGGACAAAGGTGATGATAGGCCACTGTCGAGTGC  150

seq1  TGATGACCTAGCAGAGCAGGCCCATGTATCCTGCCCTTCCTCAAGGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACCTAGCAGAGCAGGCCCATGTATCCTGCCCTTCCTCAAGGATTT  200

seq1  GTGCTAGCATCTTACCTCCACTAGGCTGAGCTCCCAGCTTGGCATTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGCATCTTACCTCCACTAGGCTGAGCTCCCAGCTTGGCATTTCCT  250

seq1  GGTTATGGAGCAGCCTGAGAAGCAGGTATAGCGGAGGAAAAAGAACTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATGGAGCAGCCTGAGAAGCAGGTATAGCGGAGGAAAAAGAACTGTC  300

seq1  TGTGTTTCCAGACAGTTCCACTGGGAATCTTACCTCTTGCTTGCAGTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCCAGACAGTTCCACTGGGAATCTTACCTCTTGCTTGCAGTGCC  350

seq1  CATCCATCCAGGGAGAGGCCCAGATACAGAAACTGGACCTTCACCAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCCAGGGAGAGGCCCAGATACAGAAACTGGACCTTCACCAACAG  400

seq1  GTCGTATCTGGGGACACTACAGCTGGCTGCTAGGCTCTCAGCCAGATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTATCTGGGGACACTACAGCTGGCTGCTAGGCTCTCAGCCAGATGAG  450

seq1  TGGATGTCAGAGGTTCACAGCTGCTGTCTGTGGGTGCAGGCTCTACCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTCAGAGGTTCACAGCTGCTGTCTGTGGGTGCAGGCTCTACCTAA  500

seq1  TGGTCACTCACACTCTGTCCAGTTCAAGATTCAAGAGTAGAGTGTGCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACTCACACTCTGTCCAGTTCAAGATTCAAGAGTAGAGTGTGCTAA  550

seq1  TGCCCTGACAGTGGCCCCCAGCAGCTAACTCAGTGGTGCAATCCTGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGACAGTGGCCCCCAGCAGCTAACTCAGTGGTGCAATCCTGTTTC  600

seq1  CAAACCTGCTGCAACTAGAGTTCAAATTAGAGCCTCCCAGACAGCTGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTGCTGCAACTAGAGTTCAAATTAGAGCCTCCCAGACAGCTGCAG  650

seq1  AGCTCTGGGCCCACCCAGCCTTCCAAACCTACAGCTTAACCAGCAGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGGCCCACCCAGCCTTCCAAACCTACAGCTTAACCAGCAGCTCT  700

seq1  TTGCCTGGGCTATGCTGGATGCTACCCCAGTGCCATCTCACTTGAATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGGGCTATGCTGGATGCTACCCCAGTGCCATCTCACTTGAATGAA  750

seq1  GTGTGACACTCCCTACAAAC-CCCCGTCAATCCTCAAAGATGAGGTTCCG  799
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTGTGACACTCCCTACAAACTCCCCGTCAATCCTCAAAGATGAGGTTCCG  800

seq1  GAGCTGGAAAGATGACTCGGTTGCCAAGAACACTTC-TTTTGCAGAGGAC  848
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGCTGGAAAGATGACTCGGTTGCCAAGAACACTTCTTTTTGCAGAGGAC  850

seq1  CCATATTTAGTTCCCAGC-TCTTTGTAGCTCACAACCACCTGTAACTCCA  897
      |||||||||||||||||| | |||||||||||||| ||||||||||||||
seq2  CCATATTTAGTTCCCAGCTTTTTTGTAGCTCACAATCACCTGTAACTCCA  900

seq1  GGCCCAGGG-AAACTGACACCCTCTTCTGGCCTCGGAAGGTACCAGGCAA  946
      ||||||||| ||||||||||||||||||||| || |||||||||||||||
seq2  GGCCCAGGGAAAACTGACACCCTCTTCTGGCTTC-GAAGGTACCAGGCAA  949

seq1  TCATGAGTTAGATACGTAGACATGCAGATATTCACAACATGCACATAAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  TCATGAGTTAGATACGTAGACATGCAGATATTCACAACATGCACTATAAA  999

seq1  TTAAA  1001
      |||||
seq2  TTAAA  1004