BAC Information

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BAC

Clone NameB6Ng01-100O22
Chromosome11 (Build37)7 (Build37)
Map Location 68,235,178 - 68,235,21720,510,596 - 20,511,615
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8, Ntn1
Downstream genePik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100O22.bB6Ng01-100O22.g
ACCDH910281DH910282
length421,012
definitionDH910281|Mus musculus domesticus DNA, BAC clone: B6Ng01-100O22, 5' end.DH910282|Mus musculus domesticus DNA, BAC clone: B6Ng01-100O22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(68,235,178 - 68,235,217)(20,510,596 - 20,511,615)
sequence
agtctgtaggccaggctgtccttgaactcagagatccacctg
gaattcactatgtggacaaggttgatctggaactcatagggatccctctg
cctctacctcccaaatgctggaattaaagacttgcaccaccaccacaagg
ccggaaaccatttttgttggaacatacaagcagaatccatgatcccaggc
caggccactcacagccagccccagaatggaatctctattctctatgaggc
cagtgttgtggttttcactgataataatggcgtccgatggcagactccaa
gaatgacccattttcagtgaaggagtctcccaaatcgacgccaggtatgg
ctcctgtccagacattgggcaatgtcttgttgggtgggtgtcagtgaatc
acttctgaactgcagacctgctttgcattggtggacagacaactgctttc
ctctaagctggttgtttggctattcttttttatttttaatctagttgtat
gcattagtgttgcagatagtgtggaggtgctcatggaggctggaaggagg
tattggatccccaagagctggattgataggcagttttgagctggccaatg
agaatgctgggaactgaaaccctctagaagaggaaaagactctctctcca
gcccctggcttcctactttgtttaaaaatacttcctaccatttggccttt
tattcctccatctcttgtttatcaaaacctccattctaattctgggcatc
cagccataaagacagatggatggtttgaggcactttctgcctggaggggt
ggtacagcgggtaaaggtgctttgcaaccaagtctgatgacctgggtttg
attcccagggcccacctggtgggaaggaaggaccaactctagcaattaac
tgtcagtccaagaaaattgtttttcccacatcctgacaattagacatcca
aagccagcattcccttggggacttgggaagcctgttcctgtgtctgggtt
cggggtgatccagggatcactggagaagaaattcttcgggacgatttata
tcttcttcatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_68235178_68235217
seq2: B6Ng01-100O22.b_55_94 (reverse)

seq1  CAGGTGAATCTCTGAGTTCTAGGACAGCCTGGCCTTCAGA  40
      |||||| |||||||||||| ||||||||||||||| ||||
seq2  CAGGTGGATCTCTGAGTTCAAGGACAGCCTGGCCTACAGA  40

seq1: chr7_20510596_20511615
seq2: B6Ng01-100O22.g_67_1078 (reverse)

seq1  TGATGGAGAAGATATAAATTCGTCCCGAAGTATCTTTCTTTCCTTCCAGT  50
      ||||| |||||||||||| ||||||||||| |  ||||||    ||||||
seq2  TGATGAAGAAGATATAAA-TCGTCCCGAAGAA--TTTCTT---CTCCAGT  44

seq1  GATCCCTGGATCACCCCGAACCCAGAACACAGGAACAGGCTTCCCAAGTC  100
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GATCCCTGGATCACCCCGAACCCAG-ACACAGGAACAGGCTTCCCAAGTC  93

seq1  CCCAAGGGAATGCTGGCTTTTGGATGTCTAATTGTCAGGATGTGGG-AAA  149
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  CCCAAGGGAATGCTGGC-TTTGGATGTCTAATTGTCAGGATGTGGGAAAA  142

seq1  ACAATTTTCTTTGGACTGACAGTTAATTTGCTAGAGTTGGTCCTTCCTTC  199
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  ACAATTTTC-TTGGACTGACAGTTAA-TTGCTAGAGTTGGTCCTTCCTTC  190

seq1  CCACCAGGTGGGCCCTGGGAATCAAACCCAGGTCATCAGACTTGGTTGC-  248
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCACCAGGTGGGCCCTGGGAATCAAACCCAGGTCATCAGACTTGGTTGCA  240

seq1  AAGCACCTTTACCCGCTGTACCACCCCTCCAGGCAGAAAGTGCCTCAAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCTTTACCCGCTGTACCACCCCTCCAGGCAGAAAGTGCCTCAAAC  290

seq1  CATCCATCTGTCTTTATGGCTGGATGCCCAGAATTAGAATGGAGGTTTTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCTGTCTTTATGGCTGGATGCCCAGAATTAGAATGGAGGTTTTG  340

seq1  ATAAACAAGAGATGGAGGAATAAAAGGCCAAATGGTAGGAAGTATTTTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAGAGATGGAGGAATAAAAGGCCAAATGGTAGGAAGTATTTTTA  390

seq1  AACAAAGTAGGAAGCCAGGGGCTGGAGAGAGAGTCTTTTCCTCTTCTAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGTAGGAAGCCAGGGGCTGGAGAGAGAGTCTTTTCCTCTTCTAGA  440

seq1  GGGTTTCAGTTCCCAGCATTCTCATTGGCCAGCTCAAAACTGCCTATCAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCAGTTCCCAGCATTCTCATTGGCCAGCTCAAAACTGCCTATCAA  490

seq1  TCCAGCTCTTGGGGATCCAATACCTCCTTCCAGCCTCCATGAGCACCTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTCTTGGGGATCCAATACCTCCTTCCAGCCTCCATGAGCACCTCC  540

seq1  ACACTATCTGCAACACTAATGCATACAACTAGATTAAAAATAAAAAAGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATCTGCAACACTAATGCATACAACTAGATTAAAAATAAAAAAGAA  590

seq1  TAGCCAAACAACCAGCTTAGAGGAAAGCAGTTGTCTGTCCACCAATGCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAAACAACCAGCTTAGAGGAAAGCAGTTGTCTGTCCACCAATGCAA  640

seq1  AGCAGGTCTGCAGTTCAGAAGTGATTCACTGACACCCACCCAACAAGACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTCTGCAGTTCAGAAGTGATTCACTGACACCCACCCAACAAGACA  690

seq1  TTGCCCAATGTCTGGACAGGAGCCATACCTGGCGTCGATTTGGGAGACTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAATGTCTGGACAGGAGCCATACCTGGCGTCGATTTGGGAGACTC  740

seq1  CTTCACTGAAAATGGGTCATTCTTGGAGTCTGCCATCGGACGCCATTATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTGAAAATGGGTCATTCTTGGAGTCTGCCATCGGACGCCATTATT  790

seq1  ATCAGTGAAAACCACAACACTGGCCTCATAGAGAATAGAGATTCCATTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGAAAACCACAACACTGGCCTCATAGAGAATAGAGATTCCATTCT  840

seq1  GGGGCTGGCTGTGAGTGGCCTGGCCTGGGATCATGGATTCTGCTTGTATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGGCTGTGAGTGGCCTGGCCTGGGATCATGGATTCTGCTTGTATG  890

seq1  TTCCAACAAAAATGGTTTCCGGCCTTGTGGTGGTGGTGCAAGTCTTTAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACAAAAATGGTTTCCGGCCTTGTGGTGGTGGTGCAAGTCTTTAAT  940

seq1  TCCAGCATTTGGGAGGTAGAGGCAGAGGGATCCCTATGAGTTCCAGATCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCATTTGGGAGGTAGAGGCAGAGGGATCCCTATGAGTTCCAGATCA  990

seq1  ACCTTGTCCACATAGTGAATTC  1020
      ||||||||||||||||||||||
seq2  ACCTTGTCCACATAGTGAATTC  1012