BAC Information

Click to search

BAC

Clone NameB6Ng01-101F01
Chromosome7 (Build37)
Map Location 80,888,715 - 80,889,526
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042029, EG384643, LOC625243, 4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik
Downstream geneSt8sia2, LOC100042127, LOC100042140, LOC546979, Slco3a1, EG665308, EG665641
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101F01.bB6Ng01-101F01.g
ACCDH910537DH910538
length317816
definitionDH910537|Mus musculus domesticus DNA, BAC clone: B6Ng01-101F01, 5' end.DH910538|Mus musculus domesticus DNA, BAC clone: B6Ng01-101F01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
agtacatcaagggagaaggggtgtagaggaacagagcccttacactgtaa
ccaggaaacaaagagaaataactctataataacaggcctcttcttcatgc
ccttctattccagctgtgccccaagctatcgagtgagccatcaacagtca
gggagagacttcctccttcagttaatcctctctagagacaccacatggtg
agagcctgtctcagaacacaaaacaaaaacctagttacatgactctccca
tgtgtacctgaacatataagtacatacatccacccagaaggaaaaagaag
aaagggagggaggaagg

gaattctgttttcatagtgaaaaaattttaaataacgtacatagggctga
gtgtgtggtggtgtatacctgtaatctcaagattgaggaggtagaggcag
gaggatcatgagtcggaggctagctgctacacagcatgaccttggtaaaa
caaaacacagaacagatccagccatggacgctgtctaaagatacgaaggc
catctgggatgggttatactgattgtcagcttgacaggatctagaatggt
ctcgagggcgagcctctaggcatgtctgtgactgtgtttctagattgggt
tcttgaggtgagaggatacaccttaaatgtggtcggcacccgtggcaggg
gctggggtctcagacagagtgcagaggggagaatgagctgaagattggtg
ttcacatctcttgtttcctgccgctgtggcatccccgccatgctgggtgg
taccttcaaaatgtgagctgaaagaaactcttccttccctaagttactat
ttcaggtattttgttagagcaacaagaaaagaaaaatacagaacgtggac
tctttaagagctgttaaaagcaatgacatgggaaggcagtgttgtgaatt
aagagagactcagactatgggaaaagtaatgctggtgacagcgtcagccg
tgtattgttgaatgcagcagacttcacaacggcatgccatgtgggctcat
ttcactcagctataaatatatgcatatatgagttgtacaatgggaatata
ttagcatgtgcacaaacttgaaaaatatgggccattctttctgtatgtac
tttatattcatggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_80888715_80889526
seq2: B6Ng01-101F01.g_69_884

seq1  GAATTCTGTTTTCATAGTGAAAAAATTTTAAATAACGTACATAGGGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTTCATAGTGAAAAAATTTTAAATAACGTACATAGGGCTGA  50

seq1  GTGTGTGGTGGTGTATACCTGTAATCTCAAGATTGAGGAGGTAGAGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGTGGTGTATACCTGTAATCTCAAGATTGAGGAGGTAGAGGCAG  100

seq1  GAGGATCATGAGTCGGAGGCTAGCTGCTACACAGCATGACCTTGGTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCATGAGTCGGAGGCTAGCTGCTACACAGCATGACCTTGGTAAAA  150

seq1  CAAAACACAGAACAGATCCAGCCATGGACGCTGTCTAAAGATACGAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACACAGAACAGATCCAGCCATGGACGCTGTCTAAAGATACGAAGGC  200

seq1  CATCTGGGATGGGTTATACTGATTGTCAGCTTGACAGGATCTAGAATGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGGATGGGTTATACTGATTGTCAGCTTGACAGGATCTAGAATGGT  250

seq1  CTCGAGGGCGAGCCTCTAGGCATGTCTGTGACTGTGTTTCTAGATTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGGGCGAGCCTCTAGGCATGTCTGTGACTGTGTTTCTAGATTGGGT  300

seq1  TCTTGAGGTGAGAGGATACACCTTAAATGTGGTCGGCACCCGTGGCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGGTGAGAGGATACACCTTAAATGTGGTCGGCACCCGTGGCAGGG  350

seq1  GCTGGGGTCTCAGACAGAGTGCAGAGGGGAGAATGAGCTGAAGATTGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGTCTCAGACAGAGTGCAGAGGGGAGAATGAGCTGAAGATTGGTG  400

seq1  TTCACATCTCTTGTTTCCTGCCGCTGTGGCATCCCCGCCATGCTGGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATCTCTTGTTTCCTGCCGCTGTGGCATCCCCGCCATGCTGGGTGG  450

seq1  TACCTTCAAAATGTGAGCTGAAAGAAACTCTTCCTTCCCTAAGTTACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCAAAATGTGAGCTGAAAGAAACTCTTCCTTCCCTAAGTTACTAT  500

seq1  TTCAGGTATTTTGTTAGAGCAACAAGAAAAGAAAAATACAGAACGTGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTATTTTGTTAGAGCAACAAGAAAAGAAAAATACAGAACGTGGAC  550

seq1  TCTTTAAGAGCTGTTAAAAGCAATGACATGGGAAGGCAGTGTTGTGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAGAGCTGTTAAAAGCAATGACATGGGAAGGCAGTGTTGTGAATT  600

seq1  AAGAGAGACTCAGACTATGGGAAAAGTAATGCTGGTGACAGCGTCAGCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGACTCAGACTATGGGAAAAGTAATGCTGGTGACAGCGTCAGCCG  650

seq1  TGTATTGTTGAATGCAGCAGACTTCACAACGGCATGCCATGTGGGCTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGTTGAATGCAGCAGACTTCACAACGGCATGCCATGTGGGCTCAT  700

seq1  TTCACTCAGCTATAAATATATGCATATATGAG-TGTACAAT-GGAATATA  748
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  TTCACTCAGCTATAAATATATGCATATATGAGTTGTACAATGGGAATATA  750

seq1  TTAGCATGTGCACAAACTTG-AAAATATGGGCCATTCTTCCTGTATGTAC  797
      |||||||||||||||||||| |||||||||||||||||| ||||||||||
seq2  TTAGCATGTGCACAAACTTGAAAAATATGGGCCATTCTTTCTGTATGTAC  800

seq1  -TTATATTCATGGCAT  812
       |||||||||||||||
seq2  TTTATATTCATGGCAT  816


| Home | SequenceCutter | Blast | Download |