BAC Information

Click to search

BAC

Clone NameB6Ng01-101N04
Chromosome7 (Build37)
Map Location 76,724,961 - 76,884,473
singlet/doubletdoublet
Overlap geneEG665410
Upstream geneEG384639, Arrdc4, LOC384741
Downstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101N04.bB6Ng01-101N04.g
ACCDH910891DH910892
length1,0581,124
definitionDH910891|Mus musculus domesticus DNA, BAC clone: B6Ng01-101N04, 5' end.DH910892|Mus musculus domesticus DNA, BAC clone: B6Ng01-101N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,883,401 - 76,884,473)(76,724,961 - 76,726,124)
sequence
gaattctttaatcatgtttaacctcagtttgtataaagtttttttttttt
ataatagccacaaaagattacacttcatattagaaaggtcaagagagatt
aatttggttccttgcacacttgaatcattaattttgtcctgggaacagag
cagggtatttaatcaaacttaaaggaaataaaataatgtgtgacaaaaga
gaagggaagcagaccgatgtgtagacttaaaattctgaatagacattttt
cattggagagtctcacaccactattcgcagtcccgtgaaagcatctgaat
tcgctcgatcacctgccctacctcccctccctcaaacttggcccaacctt
gtcatctctgctccatgtgtccatagcaacaattttcctctcttggtcca
atgacttggaagctgcaattcaattagcacagatgccagggaggagtttt
gttccatgttcacagacgtctcctgctcccaccactaggttcatgcatca
aactcagattagaagggaaactaaggaaactgccaactttgtaagcatga
agttgtaatggactggccacagatcactagcggtatgaatggggctgata
caggggcagaatgactgcagtaaggcatgcttgcagacagatgcatagct
ttcttcaacagaccaggacacttttctttatcatcaaatttaaaatgcat
atgtcagtactccagagctggattacttaggcaacacctaacataggtta
ttggtttttttttaattaggtattttcttcatttacatttcaaatgctat
cccaaaagtcccccataccccaccccccactccctacctatccactccca
cttcttggccctggggttcccctgtactgaggcatataaagtttacagac
caaggggcctctcttctcattgatggcccgactaggccatcttttgctac
atatgcagctagagaaacgagctcggggttctggtagtctaatgttgttc
acctttaggttgcagaccttcactcttggtactactcaggctctcctttg
ggggcccg
gaattctatatttttagctcataacattttttaaagtaataaaacgttga
gattttgtagagagaaaagcaaacagcaagttagtagattggtaggtaac
acagatcaatctctttgtcctggttagtgtgtcttattgcatgctatata
tttctattgatttttagaaggtttctctattcagaaagaattaaaaataa
caagaaacacctacctttcaatttgattaataaagattgccaagttaaaa
atagaaaaggatgctgagtccggaaaaaagaaacaagccttaaaaaatgc
tttaagcctatttgtacaaaatgaaatggaatgctatgattttttttccc
tgaaaatctctacatttgacaagtgagtagatattttaaatttctactta
tgaagtatagattcatatgtgagcaaaagttatcaccgaatataaaagga
tcctcacacattaacttcgcataaatacaggtaattaaatatgacccata
agaaccactagctctcagtaatgaaagaatggaaaatacataagaataat
agattttatgatgatatagttgatccttaattacatttatctaaccagaa
atgcagcctctggtcacactgtttggtttcagatctctgttcacctatgt
caaggtggtcaagaaattgttttaagggtcaggaaaaaaaagaactgtca
gtgtacagattttgagaaaaataaaagatagaaaggaaagttttaaaggg
agagaaagcaaggtctcccatcccaggcacgtagtgatggcgacagactg
tttgtctgaggaagtcttgtcctttgaaaggctgtgactgatgagctcta
acagagtgatacctgtcatctcaggatcaaacaggacaccacaaggacag
gaccttcaagagcgccttctttctggtctgaccactgactgtgtttaagt
tgtgatacactacacccagatcgttcagactgcagtgtcctcagctctca
tgctgagatcattttatcagtccccatgttgtagtgacctgacataaata
tcatgctcttcaactgtatctgctatgctggacctggagtaatattggtt
tcgagataagacttctatgaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_76883401_76884473
seq2: B6Ng01-101N04.b_46_1103 (reverse)

seq1  CGGGCCCCCAAAGGAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGT  50
      ||||||||||||||| ||||  |||  ||||||  | ||| ||||  |||
seq2  CGGGCCCCCAAAGGA-GAGCCTGAG-TAGTACC--AAGAG-TGAA--GGT  43

seq1  CTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCCGGA  100
      |||||| |||| |||| |||||||| ||   ||| ||||| |||||  ||
seq2  CTGCAA-CCTAAAGGT-GAACAACATTA--GACT-ACCAGAACCCC--GA  86

seq1  GCTCGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTC-GGCCAT  149
      |||||| ||||||||||||||||||||| |||||||||||||| ||||||
seq2  GCTCGTTTCTCTAGCTGCATATGTAGCAAAAGATGGCCTAGTCGGGCCAT  136

seq1  CATTGAGAAGAGAGGCCCCTTGGTCTTGTAAACTTTATATGCCTCAGTAC  199
      || |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAATGAGAAGAGAGGCCCCTTGGTC-TGTAAACTTTATATGCCTCAGTAC  185

seq1  AGGGGAACACCAGGGCCAAGAAGTGGGAGTGGATAGGTAGGGGAGTGGGG  249
      |||||||| |||||||||||||||||||||||||||||| |||||| |||
seq2  AGGGGAACCCCAGGGCCAAGAAGTGGGAGTGGATAGGTA-GGGAGT-GGG  233

seq1  GGGTGGGGTATGGGGGACTTTTGGGATAGCATTTGAAATGTAAATGAAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGTATGGGGGACTTTTGGGATAGCATTTGAAATGTAAATGAAGA  283

seq1  AAATACCTAATTAAAAAAAAACCAATAACCTATGTTAGGTGTTGCCTAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTAATTAAAAAAAAACCAATAACCTATGTTAGGTGTTGCCTAAG  333

seq1  TAATCCAGCTCTGGAGTACTGACATATGCATTTTAAATTTGATGATAAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCAGCTCTGGAGTACTGACATATGCATTTTAAATTTGATGATAAAG  383

seq1  AAAAGTGTCCTGGTCTGTTGAAGAAAGCTATGCATCTGTCTGCAAGCATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTCCTGGTCTGTTGAAGAAAGCTATGCATCTGTCTGCAAGCATG  433

seq1  CCTTACTGCAGTCATTCTGCCCCTGTATCAGCCCCATTCATACCGCTAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTGCAGTCATTCTGCCCCTGTATCAGCCCCATTCATACCGCTAGT  483

seq1  GATCTGTGGCCAGTCCATTACAACTTCATGCTTACAAAGTTGGCAGTTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTGGCCAGTCCATTACAACTTCATGCTTACAAAGTTGGCAGTTTC  533

seq1  CTTAGTTTCCCTTCTAATCTGAGTTTGATGCATGAACCTAGTGGTGGGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTTCCCTTCTAATCTGAGTTTGATGCATGAACCTAGTGGTGGGAG  583

seq1  CAGGAGACGTCTGTGAACATGGAACAAAACTCCTCCCTGGCATCTGTGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGACGTCTGTGAACATGGAACAAAACTCCTCCCTGGCATCTGTGCT  633

seq1  AATTGAATTGCAGCTTCCAAGTCATTGGACCAAGAGAGGAAAATTGTTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATTGCAGCTTCCAAGTCATTGGACCAAGAGAGGAAAATTGTTGC  683

seq1  TATGGACACATGGAGCAGAGATGACAAGGTTGGGCCAAGTTTGAGGGAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACACATGGAGCAGAGATGACAAGGTTGGGCCAAGTTTGAGGGAGG  733

seq1  GGAGGTAGGGCAGGTGATCGAGCGAATTCAGATGCTTTCACGGGACTGCG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAGGGCAGGTGATCGAGCGAATTCAGATGCTTTCACGGGACTGCG  783

seq1  AATAGTGGTGTGAGACTCTCCAATGAAAAATGTCTATTCAGAATTTTAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGGTGTGAGACTCTCCAATGAAAAATGTCTATTCAGAATTTTAAG  833

seq1  TCTACACATCGGTCTGCTTCCCTTCTCTTTTGTCACACATTATTTTATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACATCGGTCTGCTTCCCTTCTCTTTTGTCACACATTATTTTATTT  883

seq1  CCTTTAAGTTTGATTAAATACCCTGCTCTGTTCCCAGGACAAAATTAATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAGTTTGATTAAATACCCTGCTCTGTTCCCAGGACAAAATTAATG  933

seq1  ATTCAAGTGTGCAAGGAACCAAATTAATCTCTCTTGACCTTTCTAATATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGTGTGCAAGGAACCAAATTAATCTCTCTTGACCTTTCTAATATG  983

seq1  AAGTGTAATCTTTTGTGGCTATTAT-AAAAAAAAAAACTTTATACAAACT  1048
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAGTGTAATCTTTTGTGGCTATTATAAAAAAAAAAAACTTTATACAAACT  1033

seq1  GAGGTTAAACATGATTAAAGAATTC  1073
      |||||||||||||||||||||||||
seq2  GAGGTTAAACATGATTAAAGAATTC  1058

seq1: chr7_76724961_76726124
seq2: B6Ng01-101N04.g_68_1191

seq1  GAATTCTATATTTTTAGCTCATAACATTTTTTAAAGTAATAAAACGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATTTTTAGCTCATAACATTTTTTAAAGTAATAAAACGTTGA  50

seq1  GATTTTGTAGAGAGAAAAGCAAACAGCAAGTTAGTAGATTGGTAGGTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTAGAGAGAAAAGCAAACAGCAAGTTAGTAGATTGGTAGGTAAC  100

seq1  ACAGATCAATCTCTTTGTCCTGGTTAGTGTGTCTTATTGCATGCTATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCAATCTCTTTGTCCTGGTTAGTGTGTCTTATTGCATGCTATATA  150

seq1  TTTCTATTGATTTTTAGAAGGTTTCTCTATTCAGAAAGAATTAAAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTGATTTTTAGAAGGTTTCTCTATTCAGAAAGAATTAAAAATAA  200

seq1  CAAGAAACACCTACCTTTCAATTTGATTAATAAAGATTGCCAAGTTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAACACCTACCTTTCAATTTGATTAATAAAGATTGCCAAGTTAAAA  250

seq1  ATAGAAAAGGATGCTGAGTCCGGAAAAAAGAAACAAGCCTTAAAAAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAGGATGCTGAGTCCGGAAAAAAGAAACAAGCCTTAAAAAATGC  300

seq1  TTTAAGCCTATTTGTACAAAATGAAATGGAATGCTATGATTTTTTTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCCTATTTGTACAAAATGAAATGGAATGCTATGATTTTTTTTCCC  350

seq1  TGAAAATCTCTACATTTGACAAGTGAGTAGATATTTTAAATTTCTACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCTCTACATTTGACAAGTGAGTAGATATTTTAAATTTCTACTTA  400

seq1  TGAAGTATAGATTCATATGTGAGCAAAAGTTATCACCGAATATAAAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTATAGATTCATATGTGAGCAAAAGTTATCACCGAATATAAAAGGA  450

seq1  TCCTCACACATTAACTTCGCATAAATACAGGTAATTAAATATGACCCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACACATTAACTTCGCATAAATACAGGTAATTAAATATGACCCATA  500

seq1  AGAACCACTAGCTCTCAGTAATGAAAGAATGGAAAATACATAAGAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCACTAGCTCTCAGTAATGAAAGAATGGAAAATACATAAGAATAAT  550

seq1  AGATTTTATGATGATATAGTTGATCCTTAATTACATTTATCTAACCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTATGATGATATAGTTGATCCTTAATTACATTTATCTAACCAGAA  600

seq1  ATGCAGCCTCTGGTCACACTGTTTGGTTTCAGATCTCTGTTCACCTATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCCTCTGGTCACACTGTTTGGTTTCAGATCTCTGTTCACCTATGT  650

seq1  CAAGGTGGTCAAGAAATTGTTTTAAGGGTCAGGAAAAAAAAGAACTGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGGTCAAGAAATTGTTTTAAGGGTCAGGAAAAAAAAGAACTGTCA  700

seq1  GTGTACAGATTTTGAGAAAAATAAAAGATAGAAAGGAAAGTTTTAAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACAGATTTTGAGAAAAATAAAAGATAGAAAGGAAAGTTTTAAAGGG  750

seq1  AGAGAAAGCAAGGTCTCCCATCCCAGGCACGTAGTGATGGCGACAGACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGCAAGGTCTCCCATCCCAGGCACGTAGTGATGGCGACAGACTG  800

seq1  TTTTGTCTGAGGAAGTCTTGTCCTTTGAAAGGCTGTGACTGATGAGCTCC  850
       ||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  -TTTGTCTGAGGAAGTCTTGTCCTTTGAAAGGCTGTGACTGATGAGCT-C  848

seq1  TAACAGAGTGATACCTGTCATCTCAGGATCAAACAGGACACAACAAGGAC  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAACAGAGTGATACCTGTCATCTCAGGATCAAACAGGACACCACAAGGAC  898

seq1  AGGACCTTCAGGAGCGCCTTCTTTCTGGTCTGACCACTGACTGTGTTTAA  950
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTTCAAGAGCGCCTTCTTTCTGGTCTGACCACTGACTGTGTTTAA  948

seq1  GGTTGTGATACACTACACCCAGATCGTTTCAGACTGGCAGTTGTCCTCAG  1000
       ||||||||||||||||||||||||| |||||||| |||| |||||||||
seq2  -GTTGTGATACACTACACCCAGATCG-TTCAGACT-GCAG-TGTCCTCAG  994

seq1  CCTTCCTCATGCTGAGATCATTTTATACAGTTCCCCCATGTTGTAGTGAC  1050
      |    ||||||||||||||||||||| ||||  |||||||||||||||| 
seq2  C---TCTCATGCTGAGATCATTTTAT-CAGT--CCCCATGTTGTAGTGA-  1037

seq1  CCTGACCATAAAATTATTCCCATTGCTGCTTCATAACTGTAATCCTGCTA  1100
      ||||| ||||||  |||   || |||| ||||  |||||||   ||||||
seq2  CCTGA-CATAAA--TAT---CA-TGCT-CTTC--AACTGTA--TCTGCTA  1075

seq1  TTGCTATGAGCTGTGATGTAAATATTTGTGTTTTCTGAAGATTTTAGAAG  1150
       ||||  || ||| || || |||||   || ||||   ||||     |||
seq2  -TGCT-GGACCTG-GA-GT-AATAT---TGGTTTC--GAGAT-----AAG  1110

seq1  ACTTCTATGAAAGA  1164
      ||||||||||||||
seq2  ACTTCTATGAAAGA  1124