BAC Information

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BAC

Clone NameB6Ng01-102D02
Chromosome7 (Build37)
Map Location 8,886,311 - 8,995,285
singlet/doubletdoublet
Overlap geneLOC100042754, V2r14
Upstream geneLOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998, LOC100042009
Downstream geneEG628128, EG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102D02.bB6Ng01-102D02.g
ACCDH911154DH911155
length6351,083
definitionDH911154|Mus musculus domesticus DNA, BAC clone: B6Ng01-102D02, 5' end.DH911155|Mus musculus domesticus DNA, BAC clone: B6Ng01-102D02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,886,311 - 8,886,971)(8,994,174 - 8,995,285)
sequence
gaattcatgtcatgcacagacaaacaggtaggcaaaaatacatacacaga
ccatacaagtaaaatatattttagaaaataattagtatcctagcttcaaa
ctagtaagaaagaaagaataaattctgtcacactaccattgtttttatta
attccttcaaatataaagataaatctcaatgaaattggagagccaaacta
aatttaaaacaaacaaaaccctaaagccataaatcaaaaaacaaaagcct
actaaattaaatcaatacatcagaattgaaatatacaataacaataaaag
aacataaagggtggagcctataagaaggaatgaaaatcagaaactcattc
attacaatataaagtaatattatcaataaatggaccctggaaagtataat
acacacacacacacacacacacacacacacacacatatatgtgtatgtat
gtatgtatgtatgtatgtatgtaagtatgtatgtatatgtatgtgtgggt
atgtatgaacttattaatatgtatgtatggatgtgtgtgtgtatgaacta
gacagcaaggttgaggtgcagaaccatcacatgacattttcagacaagat
ccttcaaagatgcagtgtgattcctttcctctttg
gaattccaggtcagccaggactatacaatgaaaccctgtctcaaaaaaaa
aaaaaaatcaaaacaaaacaaaaacccaaaacaaaaaccaaaaaacaaaa
caaaaggcatcaatgttttttaagagccaaacgataatcagtttatatgc
tcttataaacatgttagtttatagtattatattcagactattgtcatgct
tattgaaaattgttaacctaattttacatcatgaatagagctataaaata
ctaatttttataactttcttatttaaacatgaatcttaatgtgttcattt
gctgacaattaacatagaagtttgtaacaaaactcaagatcaccattctt
tagagcaccactctactataatgtgaccttgaagggaaaaagtccaatag
ggaagtaagacttaagcataaagcaccacttaagacgacctgataaaaac
tttgtgatgattcaggtagagaaacctcagaataagagctcagaatgtct
ggagaatgatgtcaaaagataattccccattcctacattgcctggagtag
gtcatgcaatgatgttttaaatgtgcaaaataaagaaagagttaggatat
aaaacttgaaaattaatcctgataataaaactaggtttgtttttgccttt
agccttctttaaaaagtataccagttgaatgttaggtatataaatgcaat
tttttttttttttacaaaagtcctactatatatcaggcacaaagttaaaa
ataataaatttctctatattaaacttgctatttacttactgtttctccat
ataagatattaaagtatactctgataaatgatgcttatatgtccatgcag
tgtgacacatggacacatattaggggtatctaactctcatttatggtcaa
gtagtacttcctaaatatgttatagaagcacaactccaaaaatattattt
ctgagtgatgatagaagtgacaaatccaaagtaggaagatgagcatcacg
agtatcagcagttttgagaatattactctaatatattagcaacaaacgga
gatgtctcatctcagaacctcaaatctgtctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_8886311_8886971
seq2: B6Ng01-102D02.b_43_677

seq1  GAATTCATGTCATGCACAGACAAACAGGTAGGCAAAAATACATACACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTCATGCACAGACAAACAGGTAGGCAAAAATACATACACAGA  50

seq1  CCATACAAGTAAAATATATTTTAGAAAATAATTAGTATCCTAGCTTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACAAGTAAAATATATTTTAGAAAATAATTAGTATCCTAGCTTCAAA  100

seq1  CTAGTAAGAAAGAAAGAATAAATTCTGTCACACTACCATTGTTTTTATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAGAAAGAAAGAATAAATTCTGTCACACTACCATTGTTTTTATTA  150

seq1  ATTCCTTCAAATATAAAGATAAATCTCAATGAAATTGGAGAGCCAAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTCAAATATAAAGATAAATCTCAATGAAATTGGAGAGCCAAACTA  200

seq1  AATTTAAAACAAACAAAACCCTAAAGCCATAAATCAAAAAACAAAAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAACAAACAAAACCCTAAAGCCATAAATCAAAAAACAAAAGCCT  250

seq1  ACTAAATTAAATCAATACATCAGAATTGAAATATACAATAACAATAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATTAAATCAATACATCAGAATTGAAATATACAATAACAATAAAAG  300

seq1  AACATAAAGGGTGGAGCCTATAAGAAGGAATGAAAATCAGAAACTCATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAAGGGTGGAGCCTATAAGAAGGAATGAAAATCAGAAACTCATTC  350

seq1  ATTACAATATAAAGTAATATTATCAATAAATGGACCCTGGAAAGTATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAATATAAAGTAATATTATCAATAAATGGACCCTGGAAAGTATAAT  400

seq1  ACACACACACACACACACACACACACACACACACACACACACACACACAC  450
                    ||||||||||||||||||||||||||||||||||| 
seq2  --------------ACACACACACACACACACACACACACACACACACAT  436

seq1  ATATGTGTATGTATGTATGTATGTATGTATGTATGTAAGTATGTATGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTATGTATGTATGTATGTATGTATGTATGTAAGTATGTATGTAT  486

seq1  ATGTATGTGTGTATATGTATGAACTTATTAGTATGTATGTATGTATGTAT  550
      |||||||||||  |||||||||||||||||             |||||||
seq2  ATGTATGTGTGGGTATGTATGAACTTATTA------------ATATGTAT  524

seq1  GTATGTATGTATGTATGTATGAACTAGACAACAAGGTTGAGGTTCAGAAC  600
      ||||| |||| ||| ||||||||||||||| |||||||||||| ||||||
seq2  GTATGGATGTGTGTGTGTATGAACTAGACAGCAAGGTTGAGGTGCAGAAC  574

seq1  CATCACATGACATTTTCAGACAAGATCCTCCAAAGATGCAGTGTGATTCC  650
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CATCACATGACATTTTCAGACAAGATCCTTCAAAGATGCAGTGTGATTCC  624

seq1  TTTCCTCTTTG  661
      |||||||||||
seq2  TTTCCTCTTTG  635

seq1: chr7_8994174_8995285
seq2: B6Ng01-102D02.g_68_1150 (reverse)

seq1  GTAGACAGGATTTTTGAGGTTTCTGAGATGAGACCAATTCTCCGTTTTGT  50
      ||||||||    ||||||| ||||||||||||||    |||||| |||||
seq2  GTAGACAG---ATTTGAGG-TTCTGAGATGAGAC---ATCTCCG-TTTGT  42

seq1  GTGCTAATATATTAGAGTTAATATTGCTCAAAAACTGCTGATACTCGTGG  100
       |||||||||||||||| ||||||| ||| ||||||||||||||||||| 
seq2  -TGCTAATATATTAGAG-TAATATT-CTC-AAAACTGCTGATACTCGTG-  87

seq1  ATTGCTCATTCTTTCCCTACTTTGGATTTTTGTCAACTTCCTATCATTCA  150
        |||||| ||||  |||||||||||  |||||| |||| |||||| |||
seq2  -ATGCTCA-TCTT--CCTACTTTGGA--TTTGTC-ACTT-CTATCA-TCA  128

seq1  CTCAGAAAATAATTATTTTTGGAGTTGTGCTTCTTATAACATATTTAGGA  200
      ||||| |||||| |||||||||||||||||||| ||||||||||||||||
seq2  CTCAG-AAATAA-TATTTTTGGAGTTGTGCTTC-TATAACATATTTAGGA  175

seq1  AGTACTACTTGACCATAAATGAGAGTTAGATACCCCTAATATGTGTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTACTTGACCATAAATGAGAGTTAGATACCCCTAATATGTGTCCAT  225

seq1  GTGTCACACTGCATGGACATATAGGCATCATTTATCAGAGTATACTTTAA  300
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTGTCACACTGCATGGACATATAAGCATCATTTATCAGAGTATACTTTAA  275

seq1  TATCTTATATGGAGAAACAGTAAGTAAATAGCAAGTTTAATATAGAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTATATGGAGAAACAGTAAGTAAATAGCAAGTTTAATATAGAGAAA  325

seq1  TTTATTATTTTTACCTTTGTGCCTGATATATAGTAGGACTTTTGT-AAAA  399
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  TTTATTATTTTTAACTTTGTGCCTGATATATAGTAGGACTTTTGTAAAAA  375

seq1  AAAAAAAAATTGCATTTATATTCCTAACATTCAACTGGTATACTTTTTAA  449
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAAAAAAATTGCATTTATATACCTAACATTCAACTGGTATACTTTTTAA  425

seq1  AGAAGGCTAAAGGCAAAAACAAACCTAGTTTTATTATCAGGATTAATTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTAAAGGCAAAAACAAACCTAGTTTTATTATCAGGATTAATTTT  475

seq1  CAAGTTTTATATCCTAACTCTTTCTTTATTTTGCACATTTAAAACATCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTTATATCCTAACTCTTTCTTTATTTTGCACATTTAAAACATCAT  525

seq1  TGCATGACCTACTCCAGGCAATGTAGGAATGGGGAATTATCTTTTGACAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGACCTACTCCAGGCAATGTAGGAATGGGGAATTATCTTTTGACAT  575

seq1  CATTCTTTCTCCAGACATTCTGAGCTCTTATTCTGAGGTTTCTCTACCTG  649
      ||    ||||||||||||||||||||||||||||||||||||||||||||
seq2  CA----TTCTCCAGACATTCTGAGCTCTTATTCTGAGGTTTCTCTACCTG  621

seq1  AATCATCACAAAGTTTTTATCAGGTCGTCTTAAGTGGTGCTTTATGCTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCACAAAGTTTTTATCAGGTCGTCTTAAGTGGTGCTTTATGCTTA  671

seq1  AGTTTTACTTCCCTATTGGACTTTTTCCCTTCAAGGTCACATTATAGTAG  749
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTACTTCCCTATTGGACTTTTTCCCTTCAAGGTCACATTATAGTAG  721

seq1  AGTGGTGCTCTAAAGAATGGTGATCTTGAGTTTTGTTACAAACTTCTATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGCTCTAAAGAATGGTGATCTTGAGTTTTGTTACAAACTTCTATG  771

seq1  TTAATTGTCAGCAAATGAACACATTAAGATTCATGTTTAAATAAGAAAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTCAGCAAATGAACACATTAAGATTCATGTTTAAATAAGAAAGT  821

seq1  TATAAAAATTAGTATTTTATAGCTCTATTCATGATGTAAAATTAGGTTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAATTAGTATTTTATAGCTCTATTCATGATGTAAAATTAGGTTAA  871

seq1  CAATTTTCAATAAGCATAACAATAGTCTGAATATAATACTATAAACTAAC  949
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAATTTTCAATAAGCATGACAATAGTCTGAATATAATACTATAAACTAAC  921

seq1  ATGTTTATAAGAGCATATAAACTGATTATCGTTTGGCTCTTAAAAAACAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATAAGAGCATATAAACTGATTATCGTTTGGCTCTTAAAAAACAT  971

seq1  TGATGCCTTTTGTTTTGTTTTTTGGTTTTTGTTTTGGGTTTTTGTTTTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCTTTTGTTTTGTTTTTTGGTTTTTGTTTTGGGTTTTTGTTTTGT  1021

seq1  TTTGATTTTTTTTTTTTTTTTGAGACAGGGTTTCATTGTATAGTCCTGGC  1099
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGA-TTTTTTTTTTTTTTTGAGACAGGGTTTCATTGTATAGTCCTGGC  1070

seq1  TGACCTGGAATTC  1112
      |||||||||||||
seq2  TGACCTGGAATTC  1083