BAC Information

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BAC

Clone NameB6Ng01-103B08
Chromosome7 (Build37)
Map Location 16,018,212 - 16,019,467
singlet/doubletsinglet
Overlap geneLOC100042753
Upstream gene2810007J24Rik, EG638251, B430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2
Downstream geneLOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103B08.bB6Ng01-103B08.g
ACCDH911785DH911786
length1,2501,179
definitionDH911785|Mus musculus domesticus DNA, BAC clone: B6Ng01-103B08, 5' end.DH911786|Mus musculus domesticus DNA, BAC clone: B6Ng01-103B08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaactctcccctcattgatcaacccttggaagacatgtgtttcag
caagagccacattatctcggagcatccaaggcagaagtgtagagaacttt
ccagggaaccggggcacctatctagtgataggtctggctgttccaacgtt
ctttcctcaccttctccagcagccggtgctgaatcttcgtgtgacatacc
ctcgggattaagcctttctcctcaactcggacctccaagtatgacccaaa
actcagaatccaccttctccatgtgccagacaccatcagttttgagccct
cttcctgaactcagccccttgagtaattccctagaccagatggccatctt
ttccaaaattgatcaggtctgtgaaatctatcaaaagaatacaaggtcta
agaagcaaaggaaggagacagagaagaacacggtgcaaaatttgatgcat
ggccaggattcctgtgaaataactgaaagccctaaaggcactgtctctct
gccaagctctgcctatcaggataccttggctgagagacagtctgtgttca
gttctcctccatgcagcccatcaagtacatctccagactcagaatccata
ttttctgcatgggaggaaatatgtcatgtcagctttcctcctcctttcag
cccaagtatgttctcagacccggagtcaaccttgtccattattcagatta
atgagaatttattaagtgatgccatgatgtctctataggctgagtgaaac
ccagcaacaggggagagtacggtctgtcaatcatcagtctgtgcactatc
tgcacaacctgctgcagatcaagatccagcaatagcccaaactccacatt
ccagcacagctttgacatctgggaatccaagggagacccattgctcaata
cacactcataggtgtttaagaccagactgctatacaagaccagctcttcc
ctgtacatctcagtgacttggattctgtcccagaccaagtgtcactgtct
gacttccctgagcactctgacttgtggatgccattctaagaactgttgat
ccagaagttggggcacttcctctctcctcatctaccaaagtgaaagcttt
aaacttggagactgattgtctgaacacatgagtagaaagcttcaggaaga
cctttgtgaaatgtctcattaactagtgtattatttccatgttccacaaa
gttagctattcatggacaatggcaataaatggaattctctcccatatttt

gaattctcacgtgaggaataccaaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcggggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctagaaatcagtctggtggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatgatacagaaaatgtggtacatctacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctagccaaa
tggatggacctggagggcatcatcctgagtgaggtaacactttcacaaag
aaactcacacaatatgtactcactgataagtggatattagccccaaacct
aggatacccaagatataagatataatttgctaaacacatgaaactcaaga
agaatgaagactgaagtgtggacactatgtccctccttagtttcggcaac
aaaacacccatggaaggagttacagagacaaagtttggagctgagatgaa
aggatggaccatgtagagactgccatatccagggacccaccccataatca
gcatccaaacgctgacaccattgcatacactagcaagattttattgaaag
gacccagatgtagctgtctcttgtaagactatgccggggcctagcaaaca
cagatgtggatgctcacagtcagctaatggatggatcatagcgctcccaa
tggaggagctagagaaagtagccaggagctaaagggatctgcaaccttat
aagtggaacacattatgaactaacagtaccccggagctcttgactctagc
tgcatatatatcaaagatggcctagtcggcatcactggaagagaagccca
ttggacttgcaaactttattgctcagtacaggtaacacagggctcaaaag
gggagcggtgtgcagggatttgggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_16018212_16019467
seq2: B6Ng01-103B08.b_45_1294

seq1  GAATTCAACTCTCCCCTCATTGATCAACCCTTGGAAGACATGTGTTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCTCCCCTCATTGATCAACCCTTGGAAGACATGTGTTTCAG  50

seq1  CAAGAGCCACATTATCTCGGAGCATCCAAGGCAGAAGTGTAGAGAACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCCACATTATCTCGGAGCATCCAAGGCAGAAGTGTAGAGAACTTT  100

seq1  CCAGGGAACCGGGGCACCTATCTAGTGATAGGTCTGGCTGTTCCAACGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAACCGGGGCACCTATCTAGTGATAGGTCTGGCTGTTCCAACGTT  150

seq1  CTTTCCTCACCTTCTCCAGCAGCCGGTGCTGAATCTTCGTGTGACATACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCACCTTCTCCAGCAGCCGGTGCTGAATCTTCGTGTGACATACC  200

seq1  CTCGGGATTAAGCCTTTCTCCTCAACTCGGACCTCCAAGTATGACCCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGATTAAGCCTTTCTCCTCAACTCGGACCTCCAAGTATGACCCAAA  250

seq1  ACTCAGAATCCACCTTCTCCATGTGCCAGACACCATCAGTTTTGAGCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAATCCACCTTCTCCATGTGCCAGACACCATCAGTTTTGAGCCCT  300

seq1  CTTCCTGAACTCAGCCCCTTGAGTAATTCCCTAGACCAGATGGCCATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGAACTCAGCCCCTTGAGTAATTCCCTAGACCAGATGGCCATCTT  350

seq1  TTCCAAAATTGATCAGGTCTGTGAAATCTATCAAAAGAATACAAGGTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAATTGATCAGGTCTGTGAAATCTATCAAAAGAATACAAGGTCTA  400

seq1  AGAAGCAAAGGAAGGAGACAGAGAAGAACACGGTGCAAAATTTGATGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAAGGAAGGAGACAGAGAAGAACACGGTGCAAAATTTGATGCAT  450

seq1  GGCCAGGATTCCTGTGAAATAACTGAAAGCCCTAAAGGCACTGTCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGATTCCTGTGAAATAACTGAAAGCCCTAAAGGCACTGTCTCTCT  500

seq1  GCCAAGCTCTGCCTATCAGGATACCTTGGCTGAGAGACAGTCTGTGTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCTCTGCCTATCAGGATACCTTGGCTGAGAGACAGTCTGTGTTCA  550

seq1  GTTCTCCTCCATGCAGCCCATCAAGTACATCTCCAGACTCAGAATCCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCTCCATGCAGCCCATCAAGTACATCTCCAGACTCAGAATCCATA  600

seq1  TTTTCTGCATGGGAGGAAATATGTCATGTCAGCTTTCCTCCTCCTTTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCATGGGAGGAAATATGTCATGTCAGCTTTCCTCCTCCTTTCAG  650

seq1  CCCAAGTATGTTCTCAGACCCGGAGTCAACCTTGTCCATTATTCAGATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTATGTTCTCAGACCCGGAGTCAACCTTGTCCATTATTCAGATTA  700

seq1  ATGAGAATTTATTAAGTGATGCCATGATGTCTCTATAGGCTGAGTGAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATTTATTAAGTGATGCCATGATGTCTCTATAGGCTGAGTGAAAC  750

seq1  CCAGCAACAGGGGAGAGTACGGTCTGTCAATCATCAGTCTGTGCACTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACAGGGGAGAGTACGGTCTGTCAATCATCAGTCTGTGCACTATC  800

seq1  TGCACAACCTGCTGCAGATCAAGATCCAGCAATAGCCCAAACTCCACATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAACCTGCTGCAGATCAAGATCCAGCAATAGCCCAAACTCCACATT  850

seq1  CCAGCACAGCTTTGACATCTGGGAATCCAAGGGAGACCCATTGCTCAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACAGCTTTGACATCTGGGAATCCAAGGGAGACCCATTGCTCAATA  900

seq1  CACACTCATAGGTGTTTAAGACCAGACTGCTATACAAGACCAGCTCTTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCATAGGTGTTTAAGACCAGACTGCTATACAAGACCAGCTCTTCC  950

seq1  CTGTACATCTCAGTGACTTGGATTCTGTCCCAGACCAAGTGTCACTGTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACATCTCAGTGACTTGGATTCTGTCCCAGACCAAGTGTCACTGTCT  1000

seq1  GACTTCCCTGAGCACTTCTGACTTGTGGATGCCA-TCTAAGAACTGTTGA  1049
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  GACTTCCCTGAGCAC-TCTGACTTGTGGATGCCATTCTAAGAACTGTTGA  1049

seq1  TCCGGAAGTTTGGGGCAC-TCCTCTCTC--CATCTACCAAAGTGAAAGCT  1096
      ||| |||| ||||||||| |||||||||  ||||||||||||||||||||
seq2  TCCAGAAG-TTGGGGCACTTCCTCTCTCCTCATCTACCAAAGTGAAAGCT  1098

seq1  TTAAACTTGGAGACTGATTGTCTGAACACATGAGGTAGAAAGCTTTCAAG  1146
      ||||||||||||||||||||||||||||||||| |||||||||||   ||
seq2  TTAAACTTGGAGACTGATTGTCTGAACACATGA-GTAGAAAGCTT--CAG  1145

seq1  GAAGA-CTTTGTGAAAATGTCTCAATTAAACTAGTGTTATTTATTTTCAA  1195
      ||||| ||||||| ||||||||||  | |||||||| ||||   |||| |
seq2  GAAGACCTTTGTG-AAATGTCTCA--TTAACTAGTG-TATT--ATTTCCA  1189

seq1  TGTACCACAAAGGTACAGCTATTCATTGAACATAGCAATTAAATGG-ATT  1244
      ||| |||||||| |  |||||||||| ||  || |||| ||||||| |||
seq2  TGTTCCACAAAGTT--AGCTATTCATGGACAATGGCAA-TAAATGGAATT  1236

seq1  CTCTCC--TATTTT  1256
      ||||||  ||||||
seq2  CTCTCCCATATTTT  1250