BAC Information

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BAC

Clone NameB6Ng01-103D16
Chromosome7 (Build37)
Map Location 7,648,624 - 7,793,443
singlet/doubletdoublet
Overlap geneLOC665485, EG625353
Upstream geneZim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636
Downstream geneVmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103D16.bB6Ng01-103D16.g
ACCDH911887DH911888
length1,130850
definitionDH911887|Mus musculus domesticus DNA, BAC clone: B6Ng01-103D16, 5' end.DH911888|Mus musculus domesticus DNA, BAC clone: B6Ng01-103D16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,792,289 - 7,793,443)(7,648,624 - 7,649,486)
sequence
gaattcttgagatcagtggtgaaaggatacttgattccaaatatgtcctt
tctttcttcttctgtggtaatttcccgagttttctttgcaagaagacctg
tcaagtatcattcccacaaagacctataacctgttgggtcttaatttcaa
ggcaaaaatgttgaactaaagtgtccattaacatatcaaactgtgcagtg
gactcagcatccctctgtctctactgcacataggtccctggctggcatgc
ctccctccctgcagccacccccccaaaaaaaaataactccccagtccagg
tgatcccctgggctttactcgttccagctcctctgacacctatataactc
agccacttttagctgtgctagtctcttggctcaggtggtccctcttggtt
ggagtcccctctttctcttttcagatctcctctcctcacatggcccagtt
tagggtcatgtttactctgttaggtttcctgtatggtctgaaactcactg
tgacaagctactctctaatcccaaacatcaacttgcctctgccagcagtt
ctggaatttaggagtgtttcagcaagccgggcttttggagctcaaggaaa
tactgacacatctataatcacaacactctccctaacagattgagtgtaag
gctccatctggggaggtgtgtccacttcctggcgcttgatcacaccacac
aactgaactacattgtccagaagacattgcaccgagaatagccaattaaa
ataggcgcattagtgacaacaaaaggactctgggcgggactttcgacttt
gcatgcaggaggttctttgaaactttttttttttttttattcagcttcac
agaaaactggttttatcagtattggtcatggcagaaaacgctagagttga
ggcatttttcctccgtcacggagacggagctgaggttttcgaaagcccgt
gtgatctaatccaagcttcgaggaggatgtcacgtcccatggcgcttgcc
agtgagcccatgtgattgtgagactgcagtagagccctgccagtgagtgc
tgtgatctcccacctactgagttctagagcctggatcagtcaggagcaac
agtagactcattcccgactgtaaggcactg
gaattcatatcagctggtgtgtgctggctggttggtattccggtgtcaga
gagaactcggaggttcaggttaattgagactactgggcgtcctacaatgt
tgctctcctcctcctcatcttcctggttttccataattgaaactcagtgt
tcagcagcttcagtctactggttgggggcaaatatctgtatctgactcag
ctgcttgttggatttttcagagggcagtcacgatatgccccatttttgtg
agtgctccatagcctcaataatagtgccaggccttaggacctccccttga
gctggatccaacactgggcctgtggctggatctcattttagacaaggtcc
tctccatttctattgctgcagttctttcagcaggaacaattatgggtcag
cgttttgaatgtggcatggaaatctcctccctcgttttttgtttgtttgt
ttgtttgtttgtttttaaagacaaaactgaagaaaattcagttgtgggat
tgaatgtcctctcagtggatgaaggtttgctgtataatcataaggacctt
agttgtgaaccctcacactgtttgacatgccatcattacttattcctaga
aatggctgtactggtacacactatttaattaggctggtcttgggcacaaa
ctctgtttccttacttatttagtccggggatcaatgatgtttgccaacaa
ttctgtagggaaactgtttttgtgtatgcctggctttaattgattagaca
attttctcttggtatccatttgttcttcatgaaacataactttgtcgtag
gtagtatttgtaaacaatgtcctagaacacatgtgtatatatatatatat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7792289_7793443
seq2: B6Ng01-103D16.b_48_1177 (reverse)

seq1  CAGTGCCCTACAGTCGGGGACATGGAGTCTACCCTGTTGGCTCCTGACCC  50
      ||||||| ||||||||||   |  |||||||  ||||| ||||||||  |
seq2  CAGTGCCTTACAGTCGGG---AATGAGTCTA--CTGTT-GCTCCTGA--C  42

seq1  TGATCTCAGCGCTCTAGAACTCAGGTAGGTGGGAGATCACAAGGCACTCA  100
      ||||| ||| ||||||||||||| |||||||||||||||||  |||||||
seq2  TGATC-CAG-GCTCTAGAACTCA-GTAGGTGGGAGATCACA--GCACTCA  87

seq1  CCTGGGGCAGGGCTCTACCTGCAGTCTCCACAATCACCATTGGGCTCCAC  150
      |    |||||||||||| ||||||||| |||||||||   |||||| |||
seq2  C---TGGCAGGGCTCTA-CTGCAGTCT-CACAATCAC--ATGGGCT-CAC  129

seq1  TTGCCAGGCGGCCATGGGACGTGGACATCCCTCCTCGAAGCTTGGATTAG  200
      | || ||   |||||||||||| ||||| |||||||||||||||||||||
seq2  TGGCAAG--CGCCATGGGACGT-GACAT-CCTCCTCGAAGCTTGGATTAG  175

seq1  ATCACACGGGCTTTCGAAAACCTCAGCTCCGTCTCCGTGACGGAGGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACGGGCTTTCGAAAACCTCAGCTCCGTCTCCGTGACGGAGGAAAA  225

seq1  ATGCCTCAACTCTAGCGTTTTTCTGCCATGACCAATACTGATAAAACCAG  300
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATGCCTCAACTCTAGCG-TTTTCTGCCATGACCAATACTGATAAAACCAG  274

seq1  TTTTCTGTGAAGCTGAAT-AAAAAAAAAAAAAAGTTTCAAAGAACCTCCT  349
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTTCTGTGAAGCTGAATAAAAAAAAAAAAAAAGTTTCAAAGAACCTCCT  324

seq1  GCATGCAAAGTCGAAAGTCCCGCCCAGAGTCCTTTTGTTGTCACTAATGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAAAGTCGAAAGTCCCGCCCAGAGTCCTTTTGTTGTCACTAATGC  374

seq1  GCCTATTTTAATTGGCTATTCTCGGTGCAATGTCTTCTGGACAATGTAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATTTTAATTGGCTATTCTCGGTGCAATGTCTTCTGGACAATGTAGT  424

seq1  TCAGTTGTGTGGTGTGATCAAGCGCCAGGAAGTGGACACACCTCCCCAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGTGTGGTGTGATCAAGCGCCAGGAAGTGGACACACCTCCCCAGA  474

seq1  TGGAGCCTTACACTCAATCTGTTAGGGAGAGTGTTGTGATTATAGATGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCTTACACTCAATCTGTTAGGGAGAGTGTTGTGATTATAGATGTG  524

seq1  TCAGTATTTCCTTGAGCTCCAAAAGCCCGGCTTGCTGAAACACTCCTAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATTTCCTTGAGCTCCAAAAGCCCGGCTTGCTGAAACACTCCTAAA  574

seq1  TTCCAGAACTGCTGGCAGAGGCAAGTTGATGTTTGGGATTAGAGAGTAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAACTGCTGGCAGAGGCAAGTTGATGTTTGGGATTAGAGAGTAGC  624

seq1  TTGTCACAGTGAGTTTCAGACCATACAGGAAACCTAACAGAGTAAACATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACAGTGAGTTTCAGACCATACAGGAAACCTAACAGAGTAAACATG  674

seq1  ACCCTAAACTGGGCCATGTGAGGAGAGGAGATCTGAAAAGAGAAAGAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAAACTGGGCCATGTGAGGAGAGGAGATCTGAAAAGAGAAAGAGGG  724

seq1  GACTCCAACCAAGAGGGACCACCTGAGCCAAGAGACTAGCACAGCTAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAACCAAGAGGGACCACCTGAGCCAAGAGACTAGCACAGCTAAAA  774

seq1  GTGGCTGAGTTATATAGGTGTCAGAGGAGCTGGAACGAGTAAAGCCCAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGAGTTATATAGGTGTCAGAGGAGCTGGAACGAGTAAAGCCCAGG  824

seq1  GGATCACCTGGACTGGGGAGTTATTTTTTTTTGGGGGGGTGGCTGCAGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCACCTGGACTGGGGAGTTATTTTTTTTTGGGGGGGTGGCTGCAGGG  874

seq1  AGGGAGGCATGCCAGCCAGGGACCTATGTGCAGTAGAGACAGAGGGATGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGCATGCCAGCCAGGGACCTATGTGCAGTAGAGACAGAGGGATGC  924

seq1  TGAGTCCACTGCACAGTTTGATATGTTAATGGACACTTTAGTTCAACATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCACTGCACAGTTTGATATGTTAATGGACACTTTAGTTCAACATT  974

seq1  TTTGCCTTGAAATTAAGACCCAACAGGTTATAGGTCTTTGTGGGAATGAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTGAAATTAAGACCCAACAGGTTATAGGTCTTTGTGGGAATGAT  1024

seq1  ACTTGACAGGTCTTCTTGCAAAGAAAACTCGGGAAATTACCACAGAAGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACAGGTCTTCTTGCAAAGAAAACTCGGGAAATTACCACAGAAGAA  1074

seq1  GAAAGAAAGGACATATTTGGAATCAAGTATCCTTTCACCACTGATCTCAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGGACATATTTGGAATCAAGTATCCTTTCACCACTGATCTCAA  1124

seq1  GAATTC  1155
      ||||||
seq2  GAATTC  1130

seq1: chr7_7648624_7649486
seq2: B6Ng01-103D16.g_68_917

seq1  GAATTCATATCAGCTGGTGTGTGCTGGCTGGTTGGTATTCCGGTGTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCAGCTGGTGTGTGCTGGCTGGTTGGTATTCCGGTGTCAGA  50

seq1  GAGAACTCGGAGGTTCAGGTTAATTGAGACTACTGGGCGTCCTACAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTCGGAGGTTCAGGTTAATTGAGACTACTGGGCGTCCTACAATGT  100

seq1  TGCTCTCCTCCTCCTCATCTTCCTGGTTTTCCATAATTGAAACTCAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCCTCCTCCTCATCTTCCTGGTTTTCCATAATTGAAACTCAGTGT  150

seq1  TCAGCAGCTTCAGTCTACTGGTTGGGGGCAAATATCTGTATCTGACTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCTTCAGTCTACTGGTTGGGGGCAAATATCTGTATCTGACTCAG  200

seq1  CTGCTTGTTGGATTTTTCAGAGGGCAGTCACGATATGCCCCGTTTTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGCTTGTTGGATTTTTCAGAGGGCAGTCACGATATGCCCCATTTTTGTG  250

seq1  AGTGCTCCACAGCCTCAATAATAGTGTCAGGCCTTAGGACCTCCCCTTGA  300
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  AGTGCTCCATAGCCTCAATAATAGTGCCAGGCCTTAGGACCTCCCCTTGA  300

seq1  GCTGGATCCAACACTGGGCCTGTGGCTGGATCTCATTTTAGACAGGGTCC  350
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCTGGATCCAACACTGGGCCTGTGGCTGGATCTCATTTTAGACAAGGTCC  350

seq1  TCTCCATTTCTATTGCTGCAGTTCTTTCAGCAGGAACAATTATGGGTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTTCTATTGCTGCAGTTCTTTCAGCAGGAACAATTATGGGTCAG  400

seq1  TGTTTTGAATGTGGCATGGAAATCTCCTCCCTCGTTTTTTTGTTTGTTTG  450
       ||||||||||||||||||||||||||||||||||||             
seq2  CGTTTTGAATGTGGCATGGAAATCTCCTCCCTCGTTT-------------  437

seq1  TTTGTTTGTTTGTTTGTTTGTTTGTTTTTAAAGACAAAACTGAAGAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTGTTTGTTTGTTTTTAAAGACAAAACTGAAGAAAAT  487

seq1  TCAGTTGTGGGATTGAATGTCCTCTCAGTGGATGAAGGTTTGCTGTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGTGGGATTGAATGTCCTCTCAGTGGATGAAGGTTTGCTGTATAA  537

seq1  TCATAAGGACCTTAGTTGTGAACCCTCACACTGTTTGACATGCCATCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGGACCTTAGTTGTGAACCCTCACACTGTTTGACATGCCATCATT  587

seq1  ACTTATTCCTAGAAATGGCTGTACTGGTACACACTATTTAATTAGGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTCCTAGAAATGGCTGTACTGGTACACACTATTTAATTAGGCTGG  637

seq1  TCTTGGGCACAAACTCTGTTTCCTTACTTATTTAGTCCGGGGATCAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGCACAAACTCTGTTTCCTTACTTATTTAGTCCGGGGATCAATGA  687

seq1  TGTTTGCCAACAATTCTGTAGGGAAACTGTTTTTGTGTATGCCTGGCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCCAACAATTCTGTAGGGAAACTGTTTTTGTGTATGCCTGGCTTT  737

seq1  AATTGATTAGACAATTTTCTCTTGGTATCCATTTGTTCTTCATGAAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATTAGACAATTTTCTCTTGGTATCCATTTGTTCTTCATGAAACAT  787

seq1  AACTTTGTCGTAGGTAGTATTTGTAAACAATGTGCTAGAACACATGTATA  850
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  AACTTTGTCGTAGGTAGTATTTGTAAACAATGTCCTAGAACACATGTGTA  837

seq1  TATATATATATAT  863
      |||||||||||||
seq2  TATATATATATAT  850