BAC Information

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BAC

Clone NameB6Ng01-104F17
Chromosome7 (Build37)
Map Location 81,288,634 - 81,464,157
singlet/doubletdoublet
Overlap geneLOC100042140, LOC546979, Slco3a1
Upstream gene4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik, St8sia2, LOC100042127
Downstream geneEG665308, EG665641, 0610006L08Rik, Sv2b, 1500012K07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104F17.bB6Ng01-104F17.g
ACCDH912681DH912682
length1,1171,090
definitionDH912681|Mus musculus domesticus DNA, BAC clone: B6Ng01-104F17, 5' end.DH912682|Mus musculus domesticus DNA, BAC clone: B6Ng01-104F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,288,634 - 81,289,763)(81,463,058 - 81,464,157)
sequence
gaattcttgattgtcttaattctctccgatctgtctttagaaccctataa
aatacctattaagggatcctaccttaaagccagggaaatggctcaacggg
tagggagacttgctaccaagactgatggcctgagtaagatcactggggac
taactcatctgaaggactattgatcctacaattgatcataggatctccac
atgctctttggtatgtgcacccacatacatactaagtaaaaataataaca
tataatagattaaaaaattaattgtgacctagagaactgaggcaatcatt
tagttagttttgaagtccctcccttgcaaggatgaggacccgagtctggt
ctggaatttatgtatttctagaaaaggttgagtggagatggtgggatgcc
cacagatcactagccaggcgctctaattagtcagtgtgctctgtgttctg
taagagaccctctcccccccaaaaaaacagaaggtagggagtggtccgga
atgaccgcacctctgtgtgctcctccacatacacacaaagttttggctac
ttcttgatcatttgtgacctctgtcttctctgtgactctttgccaatttt
cacaatctgcctgtctcaattccactcattcatccttttgtgttaatttc
ccattggatattagatgcccaacgtgatagatgcatgctgggtcgaggaa
ctggccctgggctgggaattttcctttgtgtttaagcgcaccacacttct
tggttatgggctaactggagtactatatcccccttcggggaggttccaat
gattgaccaaactcttgcccatgcattcttcattctgagatcagatctac
tttctgattatgttttcgcccaacccctaagctcctccacagaatgttaa
cataccccccgcccccagccatgaatattttttttgtcttggcttgtacg
aggggagttctctgtggctcaagcttatttaaatacattcagaactgtca
tttgacgtcgatcggtctacttttaggaaacatagcacgacaccttgctt
atatcttctggatagaagggcgtttgggcactcataggccatgcgaaact
aaaaatactagggtgtg
gaattccaccaacagagcatgagcatgacgaaagcaaccaaatgtcttca
tgtcacttgcgttatcaggaaatactctgagccttaggacagagtaggag
atgagagtactgaagtcattcccttcctctggggctgcagactgggctct
ccctatttgtctctttctcagtttgtacactcctggtagctgcatctttg
taatgtagaagcaagcaaaaagcaccctagcacttgtctctggatattga
accaatcagaggcttacagccaggttgggcatcctgtatgcaggagagga
agaaacaaacagaaggggtggggtatccagcagcgcaggagtagttgcgg
gtaaggggaattgaaagaccctaagctgagccccagctgccttcagtgca
aagagcacatagttacaaaaggcaaaacctcactttgggaggagcccaga
agtcatataatcagctacctagcccagtactgtttcaaaggatacagact
aggctctcagcaatggccctgcacaagcacttgaaggtcagccaggaata
agatggagggaagagaccagccaggtaaacaccctgaataagggcaccaa
gaagcccatcacagcagtgttgtcaccagtgttagccctgcttctaacaa
gtccccttcacccttcttttccagctcagcacgtggctcggcccttgacc
cttactctccgtgcaacaacaactgtgaatgccagacggactccttcacg
ccagtgtgcggggccgatggcatcacctacctgtcagcctgcttcgccgg
atgcaacagcacggtaaatgaaacccttgggatgcaggggagagggtagg
ctccaaggcagccacagttctcacaggcctgtcaagggccacggtgggac
agtacccgctttttgccttactgaagctgttcctttaccctgatccatca
ggaggacacggacaagcagtcccccaggtctttgctgattaatggacctc
tagaacctagatggagcagttaagtaaatcaaaggcacacatgatatacc
catctgggaggtgctctgccataggatatgcacaatgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_81288634_81289763
seq2: B6Ng01-104F17.b_42_1158

seq1  GAATTCTTAATTCTCTTAATTCTCTCTGAAATTATCTTTAGAAAGAAAAT  50
      |||||||| ||| ||||||||||||| | |  | ||||||| ||    ||
seq2  GAATTCTTGATTGTCTTAATTCTCTCCG-ATCTGTCTTTAG-AACCCTAT  48

seq1  AAAATACCTTTTAAGGGATCCTACCTTAAAGCCAGGGAAATGGCTCAGTG  100
      ||||||||| |||||||||||||||||||||||||||||||||||||  |
seq2  AAAATACCTATTAAGGGATCCTACCTTAAAGCCAGGGAAATGGCTCAACG  98

seq1  GGTAGGGAGACTTGCTACCAAGACTGATGGCCTGAGTTTGATCACTGGGG  150
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  GGTAGGGAGACTTGCTACCAAGACTGATGGCCTGAGTAAGATCACTGGGG  148

seq1  ACTAACACAATAGAAGGAGTATTGATCCTACAAGTGATCTTTGGATCTCC  200
      |||||| ||   |||||| |||||||||||||| ||||| | ||||||||
seq2  ACTAACTCATCTGAAGGACTATTGATCCTACAATTGATCATAGGATCTCC  198

seq1  ACATGCTCTTTGGTATGTGCACCCACATACATACAAAGTAAAAATAATAA  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACATGCTCTTTGGTATGTGCACCCACATACATACTAAGTAAAAATAATAA  248

seq1  CATATAATAGATTAAAAAATTAATTGTGACCTAGAGAACTGAGGCAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATAGATTAAAAAATTAATTGTGACCTAGAGAACTGAGGCAATCA  298

seq1  TTTAGTTAGTAAGGAAGTCCCTCCCTTGCAAGGATGAGGACCCGAGTCTG  350
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTAGTTTTGAAGTCCCTCCCTTGCAAGGATGAGGACCCGAGTCTG  348

seq1  GTCTGGAATTTATGTATTTCTAGAAAAGGTTGAGTGGAGATGGTGGGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAATTTATGTATTTCTAGAAAAGGTTGAGTGGAGATGGTGGGATG  398

seq1  CCCACAGATCACTAGCCAGGCAGTCTAATTAGTCAGTTAGCTCTGTGTTC  450
      |||||||||||||||||||||  ||||||||||||||  |||||||||||
seq2  CCCACAGATCACTAGCCAGGCGCTCTAATTAGTCAGTGTGCTCTGTGTTC  448

seq1  TGTAAGAGACCCTCTCCCCCCCAAAAAAAGAGAAGGTAGGGAGTGGTCCA  500
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  TGTAAGAGACCCTCTCCCCCCCAAAAAAACAGAAGGTAGGGAGTGGTCCG  498

seq1  GAAAGACAGCAACTCTGTGTGCTCCTCCACATACACACAGAGTTTTGGCT  550
      ||| ||| ||| ||||||||||||||||||||||||||| ||||||||||
seq2  GAATGACCGCACCTCTGTGTGCTCCTCCACATACACACAAAGTTTTGGCT  548

seq1  AGTTCTTGAGCATTTGTGACCTCTGTCTTCTCTGTGACTCTTTGCCAATT  600
      | ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTGATCATTTGTGACCTCTGTCTTCTCTGTGACTCTTTGCCAATT  598

seq1  TTCACAATCTGCAGTTCTCAATTCCACTCATTCATCCTTTTGTTTTATTT  650
      ||||||||||||   |||||||||||||||||||||||||||| ||| ||
seq2  TTCACAATCTGCCTGTCTCAATTCCACTCATTCATCCTTTTGTGTTAATT  648

seq1  TCCCATTGGATATTAGATGCCCAGTGGGATAGATGCATGCTGGGTTGAGG  700
      |||||||||||||||||||||||  | |||||||||||||||||| ||||
seq2  TCCCATTGGATATTAGATGCCCAACGTGATAGATGCATGCTGGGTCGAGG  698

seq1  AAGTGGCCCTGTGGTGGGATTTTAGCTTTGTATTTGAGCGCACCACTTTT  750
      || |||||||| | ||||| |||  |||||| ||| ||||||||||  ||
seq2  AACTGGCCCTGGGCTGGGAATTTTCCTTTGTGTTTAAGCGCACCACACTT  748

seq1  CTTGGTTATGGTCTAACTTAAGTATTCTCATCTCCATTTGGGAGTTTTCC  800
      ||||||||||| ||||||  |||| | | ||| || || |||    ||||
seq2  CTTGGTTATGGGCTAACTGGAGTACTAT-ATCCCCCTTCGGGGAGGTTCC  797

seq1  AATGAGTGGTCTAACTTTTGGCCATGCATTCAGAGATTCTGAGATCAGAT  850
      ||||| ||  | |||| ||| ||||||||||    |||||||||||||||
seq2  AATGATTGACCAAACTCTTGCCCATGCATTC-TTCATTCTGAGATCAGAT  846

seq1  CATACTTTCTGAATTTTGTTTTTCTCCCTAACCCCTAGTCTCCTCCTACA  900
      | ||||||||| ||| || ||||| ||| ||||||||  ||||||| |||
seq2  C-TACTTTCTG-ATTATG-TTTTCGCCC-AACCCCTAAGCTCCTCC-ACA  891

seq1  AAATGTTAGCATTCCCCCCCGCCCCCAAGCCATGAATAATTTTATTGTCT  950
       ||||||| || | |||||||||||| ||||||||||| |||| ||||||
seq2  GAATGTTAACA-TACCCCCCGCCCCC-AGCCATGAATATTTTTTTTGTCT  939

seq1  TGGTTTGAAGGATGGAGAGGCTCTCTGTGGCCCCAGCTTTTACAAAGTAC  1000
      ||| ||| | || || || | |||||||||| | ||||| |  ||| |||
seq2  TGGCTTGTACGA-GGGGA-GTTCTCTGTGGCTCAAGCTTATTTAAA-TAC  986

seq1  -TTAGAAAATGTATATAGACGTCATAGCTGTATACATTTAGGAAGCACAC  1049
       ||   || |||   | ||||||  | | || ||| |||||||| || | 
seq2  ATTCAGAACTGTCATTTGACGTC-GATCGGTCTACTTTTAGGAAACATAG  1035

seq1  AATGATGACTTGCT----TCTTTTGTTACAGCATGGGGTGGGTTTGGCAA  1095
       | ||   ||||||    |||| ||  | || | || ||   || |||| 
seq2  CACGACACCTTGCTTATATCTTCTG-GATAGAAGGGCGT---TTGGGCAC  1081

seq1  TGAAAGGCCATGCAGAAAAAAAAAAGCT-GGGTGTG  1130
      | | |||||||||  ||  |||||  || |||||||
seq2  TCATAGGCCATGCGAAACTAAAAATACTAGGGTGTG  1117

seq1: chr7_81463058_81464157
seq2: B6Ng01-104F17.g_67_1155 (reverse)

seq1  ATCATTTGTGCATATCTCATGGCAGAGCCACCTTCCCAGCTGCGTATA-C  49
      |||| |||||||||||  ||||||||| |||| |||||| || ||||| |
seq2  ATCA-TTGTGCATATCCTATGGCAGAG-CACC-TCCCAGATGGGTATATC  47

seq1  ATAGTG-GCCTTTGATTTTTACTTTAACTTGCTCCATCTAGTGTCTTAGA  98
      || ||| ||||||||  ||||| ||||| |||||||||||| ||  ||||
seq2  AT-GTGTGCCTTTGA--TTTAC-TTAAC-TGCTCCATCTAG-GTTCTAGA  91

seq1  GGTCCATTTGACTCAGCAAAGGCCTGGGGGACTGCCTTGTCCTGTTGTCC  148
      ||||||||  | ||||||||| |||||||||||| |||||||   |||||
seq2  GGTCCATT--AATCAGCAAAGACCTGGGGGACTG-CTTGTCC--GTGTCC  136

seq1  TCCTGATGGATCAGGGTAAAGGAACAGCTGCAGTAAGGCAAAAAGACGGT  198
      ||||||||||||||||||||||||||||| |||||||||||||||  |||
seq2  TCCTGATGGATCAGGGTAAAGGAACAGCTTCAGTAAGGCAAAAAGCGGGT  186

seq1  ACTGT-CCACCGTGGCCCTTGACAGGCCTGTGAGCACCTGTGGCTGCC-T  246
      ||||| |||||||||||||||||||||||||||| | ||||||||||| |
seq2  ACTGTCCCACCGTGGCCCTTGACAGGCCTGTGAG-AACTGTGGCTGCCTT  235

seq1  GGAGCCTACCCTCTCCCCTGCATCCCAAGGTTTTCAATTACCGTGCTGTT  296
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  GGAGCCTACCCTCTCCCCTGCATCCCAAGGGTTTCATTTACCGTGCTGTT  285

seq1  GCATCCGGCGAAGCAGGCTGACAGGTAGGTGATGCCATCGGCCCCGCACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCGGCGAAGCAGGCTGACAGGTAGGTGATGCCATCGGCCCCGCACA  335

seq1  CTGGCGTGAAGGAGTCCGTCTGGCATTCACAGTTGTTGTTGCACGGAGAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGTGAAGGAGTCCGTCTGGCATTCACAGTTGTTGTTGCACGGAGAG  385

seq1  TAAGGGTCAAGGGCCGAGCCACGTGCTGAGCTGGAAAAGAAGGGTGAAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGTCAAGGGCCGAGCCACGTGCTGAGCTGGAAAAGAAGGGTGAAGG  435

seq1  GGACTTGTTAGAAGCAGGGCTAACACTGGTGACAACACTGCTGTGATGGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGTTAGAAGCAGGGCTAACACTGGTGACAACACTGCTGTGATGGG  485

seq1  CTTCTTGGTGCCCTTATTCAGGGTGTTTACCTGGCTGGTCTCTTCCCTCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGGTGCCCTTATTCAGGGTGTTTACCTGGCTGGTCTCTTCCCTCC  535

seq1  ATCTTATTCCTGGCTGACCTTCAAGTGCTTGTGCAGGGCCATTGCTGAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATTCCTGGCTGACCTTCAAGTGCTTGTGCAGGGCCATTGCTGAGA  585

seq1  GCCTAGTCTGTATCCTTTGAAACAGTACTGGGCTAGGTAGCTGATTATAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTCTGTATCCTTTGAAACAGTACTGGGCTAGGTAGCTGATTATAT  635

seq1  GACTTCTGGGCTCCTCCCAAAGTGAGGTTTTGCCTTTTGTAACTATGTGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGGGCTCCTCCCAAAGTGAGGTTTTGCCTTTTGTAACTATGTGC  685

seq1  TCTTTGCACTGAAGGCAGCTGGGGCTCAGCTTAGGGTCTTTCAATTCCCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCACTGAAGGCAGCTGGGGCTCAGCTTAGGGTCTTTCAATTCCCC  735

seq1  TTACCCGCAACTACTCCTGCGCTGCTGGATACCCCACCCCTTCTGTTTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCGCAACTACTCCTGCGCTGCTGGATACCCCACCCCTTCTGTTTGT  785

seq1  TTCTTCCTCTCCTGCATACAGGATGCCCAACCTGGCTGTAAGCCTCTGAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTCTCCTGCATACAGGATGCCCAACCTGGCTGTAAGCCTCTGAT  835

seq1  TGGTTCAATATCCAGAGACAAGTGCTAGGGTGCTTTTTGCTTGCTTCTAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAATATCCAGAGACAAGTGCTAGGGTGCTTTTTGCTTGCTTCTAC  885

seq1  ATTACAAAGATGCAGCTACCAGGAGTGTACAAACTGAGAAAGAGACAAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAAGATGCAGCTACCAGGAGTGTACAAACTGAGAAAGAGACAAAT  935

seq1  AGGGAGAGCCCAGTCTGCAGCCCCAGAGGAAGGGAATGACTTCAGTACTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGCCCAGTCTGCAGCCCCAGAGGAAGGGAATGACTTCAGTACTC  985

seq1  TCATCTCCTACTCTGTCCTAAGGCTCAGAGTATTTCCTGATAACGCAAGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCCTACTCTGTCCTAAGGCTCAGAGTATTTCCTGATAACGCAAGT  1035

seq1  GACATGAAGACATTTGGTTGCTTTCGTCATGCTCATGCTCTGTTGGTGGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAAGACATTTGGTTGCTTTCGTCATGCTCATGCTCTGTTGGTGGA  1085

seq1  ATTC  1100
      ||||
seq2  ATTC  1089