BAC Information

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BAC

Clone NameB6Ng01-106J15
Chromosome2 (Build37)7 (Build37)
Map Location 85,328,229 - 85,328,40353,801,601 - 53,802,332
singlet/doubletsingletsinglet
Overlap gene4833423E24Rik
Upstream geneLOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995
Downstream geneOlfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106J15.bB6Ng01-106J15.g
ACCDH914296DH914297
length799737
definitionDH914296|Mus musculus domesticus DNA, BAC clone: B6Ng01-106J15, 5' end.DH914297|Mus musculus domesticus DNA, BAC clone: B6Ng01-106J15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,328,229 - 85,328,403)(53,801,601 - 53,802,332)
sequence
gaattctcacctgaggaataccaatccttatgtcttagtcactcttatat
tgatgtgaggagacactatgaccaaatcaactcttttttttttttttttt
tttggtttttcgagacagggtttctctgtagccctggctgtcctggaact
cactttgtagaccaggctggcctcagaaatctgcctgcctctgccgccca
agtgctgggattaaagttgtgtgccaccacgcctggctgaccaaatcaac
tcttataaaagaaggcattaaattgggggctggcttccagtttcagaggt
ttagtccattatcatcatggcaggaacatggcagcagacaggagtggagc
tggagaaatggcagagggttctatatcctgatctacaggtggagagtgag
acactgggcctggtgggcttctgagacctcaaagcctacccacagtgaca
gctttctccaacaaggccacaccttctccacagccacacctcttagtcct
tatcctttcaaagagtgccactctctggtgacatttgagtttgtgagcct
gtgggggccactcttatttaaaccaccacagcatcttttttatattgctt
tcagattttttttttattgtttgtcattgctttaagttttgggaggaaaa
gacaaacatggttctttgttttttaagttgcaggaaggtggattgattaa
aaaccagcgaggacacattccaaaacttcttagataacaccgtcagggaa
tttggatttactcttgagaaaactgaggggcgactcaagttttttctct
gaattctggagcttgttggccagccagtgcaaccaaatgggtaagtttca
cattcagtcagaggctctgtctcaaaaataaagggttaaggggggaggta
tgggggacttttgggatagcattggaaatgtaaatgaagaaaatacctaa
ttaaaaaaaaagaattaggaaatagttaaaaaaaaaaaaaaaagaagaag
aagaagaagggttaatcaatacaggaagacttaagccagcctctggcttc
catatgcacacacacacacacacacacacacacacacatcccacacacac
caaaggtaaagctgacaggagtccccaccaacactgacttctagctaaga
cgtccatttcctttctgctgctatgataaaaacaaacaaaacttgacaaa
aaaacgactgtggggaagaagggcttatcttagctcccagttcctggtta
tagttcctcattgcagggaagccagagggcaggagctcgagccagatagc
tggtcttacaacacccacactcaggagcagtgtgacatgaaggcatccaa
gctgcctgccacttgtttgctttctagctaggctacttacagcatttcat
acaattcagtcccagacttagggattagtaccaccccacactaggttggg
gtcttcctgcatcaatttagtaaaccatagacatgcccactaggccaagc
tgagctagacggcacattgagactcttcagctgtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_85328229_85328403
seq2: B6Ng01-106J15.b_148_665

seq1  TTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTTCTGGAACTCACT  50
      ||||||||||||||||||||||  ||||||||||||| ||||||||||||
seq2  TTTTCGAGACAGGGTTTCTCTG--TAGCCCTGGCTGTCCTGGAACTCACT  48

seq1  TTGTAGACCAGGCTGGCTTCGAACTCAGAAATCCACTTGCCTCTGCCTCC  100
      |||||||||||||||||      ||||||||||  | |||||||||| ||
seq2  TTGTAGACCAGGCTGGC------CTCAGAAATCTGCCTGCCTCTGCCGCC  92

seq1  GGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCTGGCT---CCACTGA  147
        ||||||||||||||||  ||| ||||||||||||||||   | | | |
seq2  CAAGTGCTGGGATTAAAGTTGTGTGCCACCACGCCTGGCTGACCAAATCA  142

seq1  AGTTTTTT----TTTTTTTTTTTATTGTTTGT------------------  175
      | | || |           ||  ||||   |                   
seq2  ACTCTTATAAAAGAAGGCATTAAATTGGGGGCTGGCTTCCAGTTTCAGAG  192

seq1  --------------------------------------------------  175
                                                        
seq2  GTTTAGTCCATTATCATCATGGCAGGAACATGGCAGCAGACAGGAGTGGA  242

seq1  --------------------------------------------------  175
                                                        
seq2  GCTGGAGAAATGGCAGAGGGTTCTATATCCTGATCTACAGGTGGAGAGTG  292

seq1  --------------------------------------------------  175
                                                        
seq2  AGACACTGGGCCTGGTGGGCTTCTGAGACCTCAAAGCCTACCCACAGTGA  342

seq1  --------------------------------------------------  175
                                                        
seq2  CAGCTTTCTCCAACAAGGCCACACCTTCTCCACAGCCACACCTCTTAGTC  392

seq1  --------------------------------------------------  175
                                                        
seq2  CTTATCCTTTCAAAGAGTGCCACTCTCTGGTGACATTTGAGTTTGTGAGC  442

seq1  --------------------------------------------------  175
                                                        
seq2  CTGTGGGGGCCACTCTTATTTAAACCACCACAGCATCTTTTTTATATTGC  492

seq1  --------------------------  175
                                
seq2  TTTCAGATTTTTTTTTTATTGTTTGT  518

seq1: chr7_53801601_53802332
seq2: B6Ng01-106J15.g_71_807

seq1  GAATTCTGGAGCTTGTTGGCCAGCCAGTGCAACCAAATGGGTAAGTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAGCTTGTTGGCCAGCCAGTGCAACCAAATGGGTAAGTTTCA  50

seq1  CATTCAGTCAGAGGCTCTGTCTCAAAAATAAAGGGTTAAGGGGGGAGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGTCAGAGGCTCTGTCTCAAAAATAAAGGGTTAAGGGGGGAGGTA  100

seq1  TGGGGGACTTTTGGGATAGCATTGGAAATGTAAATGAAGAAAATACCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGACTTTTGGGATAGCATTGGAAATGTAAATGAAGAAAATACCTAA  150

seq1  TTAAAAAAAAAGAATTAGGAAATAGTTAAAAAAAAAAAAAAAAGAAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAGAATTAGGAAATAGTTAAAAAAAAAAAAAAAAGAAGAAG  200

seq1  AAGAAGAAGGGTTAATCAATACAGGAAGACTTAAGCCAGCCTCTGGCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGGGTTAATCAATACAGGAAGACTTAAGCCAGCCTCTGGCTTC  250

seq1  CATATGCACACACACACACACACACACACACACACACATCCCACACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCACACACACACACACACACACACACACACACATCCCACACACAC  300

seq1  CAAAGGTAAAGCTGACAGGAGTCCCCACCAACACTGACTTCTAGCTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTAAAGCTGACAGGAGTCCCCACCAACACTGACTTCTAGCTAAGA  350

seq1  CGTCCATTTCCTTTCTGCTGCTATGATAAAAACAAACAAAACTTGACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCATTTCCTTTCTGCTGCTATGATAAAAACAAACAAAACTTGACAAA  400

seq1  AAAACGACTGTGGGGAAGAAGGGCTTATCTTAGCTCCCAGTTCCTGGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGACTGTGGGGAAGAAGGGCTTATCTTAGCTCCCAGTTCCTGGTTA  450

seq1  TAGTTCCTCATTGCAGGGAAGCCAGAGGGCAGGAGCTCGAGCCAGATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCTCATTGCAGGGAAGCCAGAGGGCAGGAGCTCGAGCCAGATAGC  500

seq1  TGGTCTTACAACACCCACACTCAGGAGCAGTGTGACATGAAGGCATCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTACAACACCCACACTCAGGAGCAGTGTGACATGAAGGCATCCAA  550

seq1  GCTGCCTGCCACTTGTTTGCTTTCTAGCTAGGCTACTTACAGCA-TTCAT  599
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCTGCCTGCCACTTGTTTGCTTTCTAGCTAGGCTACTTACAGCATTTCAT  600

seq1  ACAATTCAGTCCCAGACCTAGGGATTAGTACCA-CCCACACTAGGTT-GG  647
      ||||||||||||||||| ||||||||||||||| ||||||||||||| ||
seq2  ACAATTCAGTCCCAGACTTAGGGATTAGTACCACCCCACACTAGGTTGGG  650

seq1  GTCTTCCTGCATCAA-TTAGT-AACCACAGACATGCCCACAAGGCCAAGC  695
      ||||||||||||||| ||||| ||||| |||||||||||| |||||||||
seq2  GTCTTCCTGCATCAATTTAGTAAACCATAGACATGCCCACTAGGCCAAGC  700

seq1  TGAGCTAGACGGCACATTGAGACTCTTCAGCTGTCTG  732
      |||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAGACGGCACATTGAGACTCTTCAGCTGTCTG  737