BAC Information

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BAC

Clone NameB6Ng01-107A20
Chromosome7 (Build37)
Map Location 128,335,399 - 128,461,388
singlet/doubletdoublet
Overlap geneLOC668556
Upstream geneCrym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa
Downstream geneHs3st2, Usp31, Scnn1g, Scnn1b, Cog7, Gga2, Ears2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, Prkcb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107A20.bB6Ng01-107A20.g
ACCDH914625DH914626
length1,2411,108
definitionDH914625|Mus musculus domesticus DNA, BAC clone: B6Ng01-107A20, 5' end.DH914626|Mus musculus domesticus DNA, BAC clone: B6Ng01-107A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,460,131 - 128,461,388)(128,335,399 - 128,336,532)
sequence
gaattctgtcaaaacaagtttggtgagcactaccaggagaatgggattat
aaggaaagaagtcattcagaacaatgggatgggacttcggggaaacctct
gtatgagattttgtgaaggaatgcaggcttgtcactcagggttttgccag
ggaaaggagctacagcagtccccaagattaagatatacagtccaagaaac
attttataaggtataaagttgatttttaaaaaggatcactaaaaggaagg
aaggaagctcagagacatgactacatcccataaggatcaaggtaacaaag
gaaggaaccatggttactaaaacacagaagttcagaggaggtgatgcaag
ccagctggtgctgatgctggcatctctcatgagactgggtcatccatgag
ttcagaaaacaaaacaccatagactggatctggaagggggaatcttaaga
cagtcacaggaacaggcagccactagcaagcggttaagtctcccctttct
gtcgcagcctccccccaccccaacacagaaagcctcccctacagacagaa
tctgtcagggagtagagaatgtgcctcacggtagaaatatggttgacaga
atctcaggcacagcatcatgaagacaaatacaaagggctgaatttgcagc
caagagacatcaatttaatagctggctagtgtgggcaaaaagaaagaggg
ccattttcacaattactttacagaagaagattctcctgtccctgtaagcc
taggaagacgaagcccagggagatcaagcaatctgtgaaaggtcacacag
tagcggatagacctggatgagctagtgcttgttctgcattagcttcagcc
ctcaccgtggacttgggtaaggatggtgtcttcctgtctccagtcatttt
tcctggaattggcttctatcccattttagcccccccccccccccaggaaa
agctgatcccaagatgaaatttagctatacaaaaagtaaggtttaccttt
ctgattttctgagtttagcagagcctgcatctgattgaggtgcactgacg
acgtctgccctgatggaaggagggagcgatgaatcacagctcgagaaacc
atgaaaacttccagcattctctcatcagcctaatgatccaaagaatcctg
agaaggcaggtggaacattccagaactgacaagacagctgacgtttgtgt
gaatgcacatgggcccatatgccgagctgtcttatgttgaa
gaattctaggcaggtgtgagcaggaagatgatgaaacaaagagctccaaa
actagatacgaaattgcagattgttttgctaggtctcatgaaggaagaga
atttttattagagagaaaggaggtcctggaaagagtaaatcttgaactgg
actatataatagttttctggctaagggcaaggaagaatggttttggtgca
ctgtggcaaaatgccacagataggctggcttataaaatgtaaaactttac
ttcccacaactgtagaagttgggagatccaagatcaaggaactgtgaagt
cagctgggacccaacaaatgctactctctgcctgcctgtctgtctgtctt
tgtctgtctctcttctctttctctgtgtctctgtctgtctgtatgtctct
ctgattctccactgggctagcttgggcagtgttttctatgtagtgacaga
gtcctaaaagctaatgcctgtatgcaagaccttgagtctcatggcctgga
ccatcactgtaccatccctaccacattctgttggcttaaacaagttgcat
agctagcctagatacaaggagtgaggagatgcacaccagctcttgaggga
aggagccactaagtcatactctaaggagtgccacacgacatgggtgaacc
cttgagcacattattattttttgaaatcacgtatggaatatagactgcac
agatttttaatttggaaccagcagggagcatggccaaggtcattcttgct
gcactatggtagaggttttcaggagctcttgtcttactctgttgtttggt
tgtcactctttggatgccgggtctagaagggtgctgaggatgatacagca
ctcagagggtcaacccactccttggctgaacacatggagggggaatcccc
agctttggcacctccaggtttcccactgagtgcttggaggctctcacaga
gacagcttaacttgttgtagtgcgaagctaatactgccaccacagctgag
ctgcgaagaatcccagacttgtctaaatatactgtgttggcctaggggat
ctgaagtcagattcaatcctctaatgcacagaagcatatttctgactgga
atttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_128460131_128461388
seq2: B6Ng01-107A20.b_31_1271 (reverse)

seq1  TTCTACAT-AGACAG-TCAGCATAT-GGCCCATG-GCAATCTCCACCACA  46
      ||| |||| |||||| || |||||| |||||||| ||| ||     ||||
seq2  TTCAACATAAGACAGCTCGGCATATGGGCCCATGTGCATTC----ACACA  46

seq1  AACGTCCAGCCTGTCTTGCTACAG-TCTGTGGATGTTTCCCCACCTGCCT  95
      ||||| ||| ||||||||   ||| |||| | |||||   ||||||||||
seq2  AACGT-CAG-CTGTCTTG--TCAGTTCTG-GAATGTT---CCACCTGCCT  88

seq1  CCTCAGTATTCTTTGGATCATTAGCCTGATGGAGAGATGGCTGGGAAGGT  145
       ||||| ||||||||||||||||| ||||| ||||||  ||| |||||  
seq2  TCTCAGGATTCTTTGGATCATTAGGCTGAT-GAGAGAATGCT-GGAAG--  134

seq1  TTCTCATGTGTTCTCGAGGCTGTGATTCAACCGCTCCCTCC-TCCATCCA  194
      || |||||  ||||||| |||||||||| | |||||||||| ||||| ||
seq2  TTTTCATGGTTTCTCGA-GCTGTGATTC-ATCGCTCCCTCCTTCCAT-CA  181

seq1  GGGCAGACCGTCGTCAGTGGCACCTCAATCAGATGCAGGCTCTGCTAAAC  244
      ||||||| |||||||||| |||||||||||||||||||||||||||||||
seq2  GGGCAGA-CGTCGTCAGT-GCACCTCAATCAGATGCAGGCTCTGCTAAAC  229

seq1  TCAGAAAATCAGAAAAGGTAAACCTTACTTTTTGTATAGCTAAATTTCAT  294
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAATCAG-AAAGGTAAACCTTACTTTTTGTATAGCTAAATTTCAT  278

seq1  CTTGGGATCAGCTTTTCCTGGGGGGGGGGGGGGGGCTAAAATGGGATAGA  344
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTGGGATCAGCTTTTCCT-GGGGGGGGGGGGGGGCTAAAATGGGATAGA  327

seq1  AGCCAATTCCAGGAAAAATGACTGGAGACAGGAAGACACCATCCTTACCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATTCCAGGAAAAATGACTGGAGACAGGAAGACACCATCCTTACCC  377

seq1  AAGTCCACGGTGAGGGCTGAAGCTAATGCAGAACAAGCACTAGCTCATCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCACGGTGAGGGCTGAAGCTAATGCAGAACAAGCACTAGCTCATCC  427

seq1  AGGTCTATCCGCTACTGTGTGACCTTTCACAGATTGCTTGATCTCCCTGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTATCCGCTACTGTGTGACCTTTCACAGATTGCTTGATCTCCCTGG  477

seq1  GCTTCGTCTTCCTAGGCTTACAGGGACAGGAGAATCTTCTTCTGTAAAGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCGTCTTCCTAGGCTTACAGGGACAGGAGAATCTTCTTCTGTAAAGT  527

seq1  AATTGTGAAAATGGCCCTCTTTCTTTTTGCCCACACTAGCCAGCTATTAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGAAAATGGCCCTCTTTCTTTTTGCCCACACTAGCCAGCTATTAA  577

seq1  ATTGATGTCTCTTGGCTGCAAATTCAGCCCTTTGTATTTGTCTTCATGAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGTCTCTTGGCTGCAAATTCAGCCCTTTGTATTTGTCTTCATGAT  627

seq1  GCTGTGCCTGAGATTCTGTCAACCATATTTCTACCGTGAGGCACATTCTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCCTGAGATTCTGTCAACCATATTTCTACCGTGAGGCACATTCTC  677

seq1  TACTCCCTGACAGATTCTGTCTGTAGGGGAGGCTTTCTGTGTTGGGGTGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCCTGACAGATTCTGTCTGTAGGGGAGGCTTTCTGTGTTGGGGTGG  727

seq1  GGGGAGGCTGCGACAGAAAGGGGAGACTTAACCGCTTGCTAGTGGCTGCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGCTGCGACAGAAAGGGGAGACTTAACCGCTTGCTAGTGGCTGCC  777

seq1  TGTTCCTGTGACTGTCTTAAGATTCCCCCTTCCAGATCCAGTCTATGGTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTGTGACTGTCTTAAGATTCCCCCTTCCAGATCCAGTCTATGGTG  827

seq1  TTTTGTTTTCTGAACTCATGGATGACCCAGTCTCATGAGAGATGCCAGCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTCTGAACTCATGGATGACCCAGTCTCATGAGAGATGCCAGCA  877

seq1  TCAGCACCAGCTGGCTTGCATCACCTCCTCTGAACTTCTGTGTTTTAGTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACCAGCTGGCTTGCATCACCTCCTCTGAACTTCTGTGTTTTAGTA  927

seq1  ACCATGGTTCCTTCCTTTGTTACCTTGATCCTTATGGGATGTAGTCATGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGTTCCTTCCTTTGTTACCTTGATCCTTATGGGATGTAGTCATGT  977

seq1  CTCTGAGCTTCCTTCCTTCCTTTTAGTGATCCTTTTTAAAAATCAACTTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGCTTCCTTCCTTCCTTTTAGTGATCCTTTTTAAAAATCAACTTT  1027

seq1  ATACCTTATAAAATGTTTCTTGGACTGTATATCTTAATCTTGGGGACTGC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTATAAAATGTTTCTTGGACTGTATATCTTAATCTTGGGGACTGC  1077

seq1  TGTAGCTCCTTTCCCTGGCAAAACCCTGAGTGACAAGCCTGCATTCCTTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTCCTTTCCCTGGCAAAACCCTGAGTGACAAGCCTGCATTCCTTC  1127

seq1  ACAAAATCTCATACAGAGGTTTCCCCGAAGTCCCATCCCATTGTTCTGAA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCTCATACAGAGGTTTCCCCGAAGTCCCATCCCATTGTTCTGAA  1177

seq1  TGACTTCTTTCCTTATAATCCCATTCTCCTGGTAGTGCTCACCAAACTTG  1244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCTTTCCTTATAATCCCATTCTCCTGGTAGTGCTCACCAAACTTG  1227

seq1  TTTTGACAGAATTC  1258
      ||||||||||||||
seq2  TTTTGACAGAATTC  1241

seq1: chr7_128335399_128336532
seq2: B6Ng01-107A20.g_64_1171

seq1  GAATTCTAGGCAGGTGTGAGCAGGAAGATGATGAAACAAAGAGCTCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCAGGTGTGAGCAGGAAGATGATGAAACAAAGAGCTCCAAA  50

seq1  ACTAGATACGAAATTGCAGATTGTTTTGCTAGGTCTCATGAAGGAAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATACGAAATTGCAGATTGTTTTGCTAGGTCTCATGAAGGAAGAGA  100

seq1  ATTTTTATTAGAGAGAAAGGAGGTCCTGGAAAGAGTAAATCTTGAACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTAGAGAGAAAGGAGGTCCTGGAAAGAGTAAATCTTGAACTGG  150

seq1  ACTATATAATAGTTTTCTGGCTAAGGGCAAGGAAGAATGGTTTTGGTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATAATAGTTTTCTGGCTAAGGGCAAGGAAGAATGGTTTTGGTGCA  200

seq1  CTGTGGCAAAATGCCACAGATAGGCTGGCTTATAAAATGTAAAACTTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCAAAATGCCACAGATAGGCTGGCTTATAAAATGTAAAACTTTAC  250

seq1  TTCCCACAACTGTAGAAGTTGGGAGATCCAAGATCAAGGAACTGTGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACAACTGTAGAAGTTGGGAGATCCAAGATCAAGGAACTGTGAAGT  300

seq1  CAGCTGGGACCCAACAAATGCTACTCTCTGCCTGCCTGTCTGTCTGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGGACCCAACAAATGCTACTCTCTGCCTGCCTGTCTGTCTGTCTT  350

seq1  TGTCTGTCTCTCTTCTCTTTCTCTGTGTCTCTGTCTGTCTGTATGTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCTCTCTTCTCTTTCTCTGTGTCTCTGTCTGTCTGTATGTCTCT  400

seq1  CTGATTCTCCACTGGGCTAGCTTGGGCAGTGTTTTCTATGTAGTGACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCTCCACTGGGCTAGCTTGGGCAGTGTTTTCTATGTAGTGACAGA  450

seq1  GTCCTAAAAGCTAATGCCTGTATGCAAGACCTTGAGTCTCATGGCCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAAAAGCTAATGCCTGTATGCAAGACCTTGAGTCTCATGGCCTGGA  500

seq1  CCATCACTGTACCATCCCTACCACATTCTGTTGGCTTAAACAAGTTGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACTGTACCATCCCTACCACATTCTGTTGGCTTAAACAAGTTGCAT  550

seq1  AGCTAGCCTAGATACAAGGAGTGAGGAGATGCACACCAGCTCTTGAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCCTAGATACAAGGAGTGAGGAGATGCACACCAGCTCTTGAGGGA  600

seq1  AGGAGCCACTAAGTCATACTCTAAGGAGTGCCACACGACATGGGTGAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCACTAAGTCATACTCTAAGGAGTGCCACACGACATGGGTGAACC  650

seq1  CTTGAGCACATTATTATTTTTTGAAATCACGTATGGAATATAGACTGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCACATTATTATTTTTTGAAATCACGTATGGAATATAGACTGCAC  700

seq1  AGATTTTTAATTTGGAACCAGCAGGGAGCATGGCCAAGGTCATTCTTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTAATTTGGAACCAGCAGGGAGCATGGCCAAGGTCATTCTTGCT  750

seq1  GCACTATGGTAGAGGTTTTCAGGAGCTCTTGTCTTACTCTGTTGTTTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATGGTAGAGGTTTTCAGGAGCTCTTGTCTTACTCTGTTGTTTGGT  800

seq1  TGTCACTCTTTGGATGCCGGGTCTAGAAGGGTGCTGAGGATGATACAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTCTTTGGATGCCGGGTCTAGAAGGGTGCTGAGGATGATACAGCA  850

seq1  CTCAGAGGGTCAAACCCACTCCTTGGCTGAACACATGGAGGGGGGAATCC  900
      ||||||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  CTCAGAGGGTC-AACCCACTCCTTGGCTGAACACATGGA-GGGGGAATCC  898

seq1  CCAGCTTTTGGCACCTCCAGGTTTCCCACTGAGGTGCCTTGGAGGGCTCT  950
      ||||| |||||||||||||||||||||||||| ||| |||||| ||||||
seq2  CCAGC-TTTGGCACCTCCAGGTTTCCCACTGA-GTG-CTTGGA-GGCTCT  944

seq1  CACAGAGACAGCTTAACTTGTTTGTAGTTGCGAAGCTAATACTGCCACCA  1000
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  CACAGAGACAGCTTAACTTG-TTGTAG-TGCGAAGCTAATACTGCCACCA  992

seq1  CAAGCTGAGCTGCGAAGAATCCCAGACTTGTCTAAATTATAATTTGTTTG  1050
      | |||||||||||||||||||||||||||||||||| |||| | ||||  
seq2  C-AGCTGAGCTGCGAAGAATCCCAGACTTGTCTAAA-TATACTGTGTT--  1038

seq1  TTGGGCCTTAAGGGGATCTGGAAAGTCAGTTCCAAATCCTCTCACAGTGC  1100
         |||||  ||||||||||  ||||||| | | ||||||||   | |||
seq2  ---GGCCT--AGGGGATCTG--AAGTCAGATTC-AATCCTCT---AATGC  1077

seq1  ACAGAAGCATATTTCCCCAAACTGGCATTTCTCT  1134
      ||||||||||||||   |  ||||| ||||||||
seq2  ACAGAAGCATATTT---CTGACTGGAATTTCTCT  1108