BAC Information

Click to search

BAC

Clone NameB6Ng01-107E07
Chromosome7 (Build37)
Map Location 88,853,297 - 89,033,373
singlet/doubletdoublet
Overlap gene2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3
Upstream geneIqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2
Downstream geneBnc1, Sh3gl3, Adamtsl3, 1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107E07.bB6Ng01-107E07.g
ACCDH914779DH914780
length1,1611,024
definitionDH914779|Mus musculus domesticus DNA, BAC clone: B6Ng01-107E07, 5' end.DH914780|Mus musculus domesticus DNA, BAC clone: B6Ng01-107E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,032,197 - 89,033,373)(88,853,297 - 88,854,323)
sequence
gaattcaggtcttgctgctcaagcactttacttgtagagccatgctccca
gctcttattttcagtcttttggggccctccatacagataataatagctat
gctaatttgtttcccaacagtgtgttaagcttccatttgccacctgtatc
ctccccagtgtttgatgcttgtttttttgatgatggatagctattcctgc
tggcatgagatgagatcttactgtaattttgatttgcacaacactgctca
actcaccaaatatcaaaatcataataccaaatcttttcatataaaaatgg
tatatatgaaaaaaatctttttggcttctgcttgccatattttgggtatc
cattagctttgctgtcccctagaggctctttcactgtgtctctcattaaa
atacctcaaggtagactctgatgacattttccagatgtcagccaacatag
ccaacgaagagctcaaaaggtgaccacagaaaatgaccacccagcccatt
gacttttaggtcaaggaagcatcaggcctagcagatatccagaattctgt
gtccagtctatagataccattatgaattgaaaattaatacatgtaatcac
agtagttatagtagacatttaaaagtcataaactctacaattgctctaca
agaacccatttaacagcgccttacttaaaacaaagaggtgtgctcttaaa
gtggtcacactggtactatcatctcctcactgcatgacagtactccgagt
ctactgttggatttgctttaaactattctttaatatgaattgagctgtta
aatgaattttctgccacagtaaacaaagaatttattgcctttctcacgta
atattaataaaatacacttttaaagatttctttaacaaattttcattatc
tgggtatctacccatatttacccaaggaaagagtcctccagagtatctgt
gagtataatcatatggttagtgtttcatttactgataaatcagttaccag
gcattatattcctcaagttcaaaggtgtaaatatgcctttaaaagttaaa
gatccactatctccttgttgggtaggcgagaaaataatgttcctttctgt
ggaatgtaagcttgatagctttctctttggaaggcctatgtgaattggac
ggtgagttaac
gaattccaaagaccagggctgtgccaaggtgctgaagggaaggggtcact
ggtaaagtcccagaaagaagccagaagtaggaggatcaaaagcaggagcc
agcaaatgtgtgttaggggtatggaaaacaagactctgagcaaaggagcc
cagtggtgttcaagccctggctgggaggtccatctctttgctcctcagat
agacagggtgcacccacatcaccttggcaggatgcaatgaggccaagcag
gtggggtggtgaatcgcagccagtgctctgtggttaaattggctgtcctc
tgtgtagaaggctctgagggaagagagagaggaagggtggatcaaactca
aggtctgggaagggatgtgctttcttcaccttctccaagctactctagga
agaggggtgtggagaaagtggactctgctactcttctcctctccttcaac
ccaaggcttcccgggcagttctctctgatggctccctactccgtctcatt
ttctcgagtcatcttcactgcactctctcatcatcttggactcttcccaa
gagatgggcattcacttcccagttagaggtcttgctggcaaacacttact
gtggagcatcactcctccctgtgatcaataccctagttgacaatggagaa
ggctgaaaggaagagactctgtgcccgtggctaaggccaggctagagaga
gtctacataggccagttagctgggtataaaaaggtgccggtggtgaggac
aaagctgagaaagaaagaccgtggtcttggagaaaacaggggagagtgtg
atctgagcctaatagatgaactagtcctggagaagggaagaggttttgct
ctaagcaggaaaggcttggggcaagatttctctggagagcttctgaggaa
gcaaggacatctagtgagcatgcagtaaagaacagataggaaagaaatta
aattagaacagaagattggggctaggagagatgctcaccataggagctct
gactgttcttctgacgtcctgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_89032197_89033373
seq2: B6Ng01-107E07.b_46_1206 (reverse)

seq1  GTTACACTCACCCTGTCAAATCACATAGGCCTTTCACAAGGAGAAAAGCT  50
      |||| ||||||| |  ||| |||||||||||||   ||| ||| ||||||
seq2  GTTA-ACTCACCGT-CCAATTCACATAGGCCTT--CCAAAGAG-AAAGCT  45

seq1  ATCAAGCTTACCATTCCCACAGAAAAGAACATTTAATTTCTCTGTCCCTA  100
      |||||||||| |||| ||||||||| ||||| ||| ||||||    ||||
seq2  ATCAAGCTTA-CATT-CCACAGAAAGGAACA-TTATTTTCTC---GCCTA  89

seq1  CCCCAAACAAGGAGAATAGTGGATCTTTAAACTTTTAAAGGCATATTTAC  150
      |||  ||||||||| ||||||||||||| |||||||||||||||||||||
seq2  CCC--AACAAGGAG-ATAGTGGATCTTT-AACTTTTAAAGGCATATTTAC  135

seq1  AACCTTTGAACTTGAGAAATATAATGCCTGGTAACTGATTTATCAGTAAA  200
       ||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  -ACCTTTGAACTTGAGGAATATAATGCCTGGTAACTGATTTATCAGTAAA  184

seq1  TGAAACACTAACCATATGATTATACTCACAGATACTCTGGAGGACTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACACTAACCATATGATTATACTCACAGATACTCTGGAGGACTCTTT  234

seq1  CCTTGGGTAAATATGGGTAGATACCCAGATAATGAAAATTTGTTAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGTAAATATGGGTAGATACCCAGATAATGAAAATTTGTTAAAGAA  284

seq1  ATCTTTAAAAGTGTATTTTATTAATATTACGTGAGAAAGGCAATAAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAAAAGTGTATTTTATTAATATTACGTGAGAAAGGCAATAAATTC  334

seq1  TTTGTTTACTGTGGCAGAAAATTCATTTAACAGCTCAATTCATATTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTACTGTGGCAGAAAATTCATTTAACAGCTCAATTCATATTAAAG  384

seq1  AATAGTTTAAAGCAAATCCAACAGTAGACTCGGAGTACTGTCATGCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTAAAGCAAATCCAACAGTAGACTCGGAGTACTGTCATGCAGTG  434

seq1  AGGAGATGATAGTACCAGTGTGACCACTTTAAGAGCACACCTCTTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGATAGTACCAGTGTGACCACTTTAAGAGCACACCTCTTTGTTT  484

seq1  TAAGTAAGGCGCTGTTAAATGGGTTCTTGTAGAGCAATTGTAGAGTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAGGCGCTGTTAAATGGGTTCTTGTAGAGCAATTGTAGAGTTTAT  534

seq1  GACTTTTAAATGTCTACTATAACTACTGTGATTACATGTATTAATTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTAAATGTCTACTATAACTACTGTGATTACATGTATTAATTTTCA  584

seq1  ATTCATAATGGTATCTATAGACTGGACACAGAATTCTGGATATCTGCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAATGGTATCTATAGACTGGACACAGAATTCTGGATATCTGCTAG  634

seq1  GCCTGATGCTTCCTTGACCTAAAAGTCAATGGGCTGGGTGGTCATTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATGCTTCCTTGACCTAAAAGTCAATGGGCTGGGTGGTCATTTTCT  684

seq1  GTGGTCACCTTTTGAGCTCTTCGTTGGCTATGTTGGCTGACATCTGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCACCTTTTGAGCTCTTCGTTGGCTATGTTGGCTGACATCTGGAAA  734

seq1  ATGTCATCAGAGTCTACCTTGAGGTATTTTAATGAGAGACACAGTGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATCAGAGTCTACCTTGAGGTATTTTAATGAGAGACACAGTGAAAG  784

seq1  AGCCTCTAGGGGACAGCAAAGCTAATGGATACCCAAAATATGGCAAGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTAGGGGACAGCAAAGCTAATGGATACCCAAAATATGGCAAGCAG  834

seq1  AAGCCAAAAAGATTTTTTTCATATATACCATTTTTATATGAAAAGATTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAAAAGATTTTTTTCATATATACCATTTTTATATGAAAAGATTTG  884

seq1  GTATTATGATTTTGATATTTGGTGAGTTGAGCAGTGTTGTGCAAATCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATGATTTTGATATTTGGTGAGTTGAGCAGTGTTGTGCAAATCAAA  934

seq1  ATTACAGTAAGATCTCATCTCATGCCAGCAGGAATAGCTATCCATCATCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTAAGATCTCATCTCATGCCAGCAGGAATAGCTATCCATCATCA  984

seq1  AAAAAACAAGCATCAAACACTGGGGAGGATACAGGTGGCAAATGGAAGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAGCATCAAACACTGGGGAGGATACAGGTGGCAAATGGAAGCT  1034

seq1  TAACACACTGTTGGGAAACAAATTAGCATAGCTATTATTATCTGTATGGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACACTGTTGGGAAACAAATTAGCATAGCTATTATTATCTGTATGGA  1084

seq1  GGGCCCCAAAAGACTGAAAATAAGAGCTGGGAGCATGGCTCTACAAGTAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCCAAAAGACTGAAAATAAGAGCTGGGAGCATGGCTCTACAAGTAA  1134

seq1  AGTGCTTGAGCAGCAAGACCTGAATTC  1177
      |||||||||||||||||||||||||||
seq2  AGTGCTTGAGCAGCAAGACCTGAATTC  1161

seq1: chr7_88853297_88854323
seq2: B6Ng01-107E07.g_65_1088

seq1  GAATTCCAAAGACCAGGGCTGTGCCAAGGTGCTGAAGGGAAGGGGTCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGACCAGGGCTGTGCCAAGGTGCTGAAGGGAAGGGGTCACT  50

seq1  GGTAAAGTCCCAGAAAGAAGCCAGAAGTAGGAGGATCAAAAGCAGGAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGTCCCAGAAAGAAGCCAGAAGTAGGAGGATCAAAAGCAGGAGCC  100

seq1  AGCAAATGTGTGTTAGGGGTATGGAAAACAAGACTCTGAGCAAAGGAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATGTGTGTTAGGGGTATGGAAAACAAGACTCTGAGCAAAGGAGCC  150

seq1  CAGTGGTGTTCAAGCCCTGGCTGGGAGGTCCATCTCTTTGCTCCTCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTGTTCAAGCCCTGGCTGGGAGGTCCATCTCTTTGCTCCTCAGAT  200

seq1  AGACAGGGTGCACCCACATCACCTTGGCAGGATGCAATGAGGCCAAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGTGCACCCACATCACCTTGGCAGGATGCAATGAGGCCAAGCAG  250

seq1  GTGGGGTGGTGAATCGCAGCCAGTGCTCTGTGGTTAAATTGGCTGTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTGGTGAATCGCAGCCAGTGCTCTGTGGTTAAATTGGCTGTCCTC  300

seq1  TGTGTAGAAGGCTCTGAGGGAAGAGAGAGAGGAAGGGTGGATCAAACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGAAGGCTCTGAGGGAAGAGAGAGAGGAAGGGTGGATCAAACTCA  350

seq1  AGGTCTGGGAAGGGATGTGCTTTCTTCACCTTCTCCAAGCTACTCTAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGGGAAGGGATGTGCTTTCTTCACCTTCTCCAAGCTACTCTAGGA  400

seq1  AGAGGGGTGTGGAGAAAGTGGACTCTGCTACTCTTCTCCTCTCCTTCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGTGTGGAGAAAGTGGACTCTGCTACTCTTCTCCTCTCCTTCAAC  450

seq1  CCAAGGCTTCCCGGGCAGTTCTCTCTGATGGCTCCCTACTCCGTCTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCTTCCCGGGCAGTTCTCTCTGATGGCTCCCTACTCCGTCTCATT  500

seq1  TTCTCGAGTCATCTTCACTGCACTCTCTCATCATCTTGGACTCTTCCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGAGTCATCTTCACTGCACTCTCTCATCATCTTGGACTCTTCCCAA  550

seq1  GAGATGGGCATTCACTTCCCAGTTAGAGGTCTTGCTGGCAAACACTTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGGCATTCACTTCCCAGTTAGAGGTCTTGCTGGCAAACACTTACT  600

seq1  GTGGAGCATCACTCCTCCCTGTGATCAATACCCTAGTTGACAATGGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCATCACTCCTCCCTGTGATCAATACCCTAGTTGACAATGGAGAA  650

seq1  GGCTGAAAGGAAGAGACTCTGTGCCCGTGGCTAAGGCCAGGCTAGAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAAGGAAGAGACTCTGTGCCCGTGGCTAAGGCCAGGCTAGAGAGA  700

seq1  GTCTACATAGGCCAGTTAGCTGGGTAT-AAAAGGTGCCGGTGGTGAGGAC  749
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTCTACATAGGCCAGTTAGCTGGGTATAAAAAGGTGCCGGTGGTGAGGAC  750

seq1  AAAGCTGAGAAAGAAAGACCGTGGTCTTGGAGAAAACAGGGGAGAGTGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGAGAAAGAAAGACCGTGGTCTTGGAGAAAACAGGGGAGAGTGTG  800

seq1  ATCTGAGCCTAATAGATGAACTAGTCCTGGAGAAGGGAAGAGGTTTTGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCTGAGCCTAATAGATGAACTAGTCCTGGAGAAGGGAAGAGGTTTTGCT  850

seq1  TCAGGCAGGAAAGGC-TGGGGCAAGATTTACCTGGAGAGCCTCTGAGGAA  898
        | ||||||||||| |||||||||||||  ||||||||| |||||||||
seq2  CTAAGCAGGAAAGGCTTGGGGCAAGATTTCTCTGGAGAGCTTCTGAGGAA  900

seq1  GCAAGGACACCTAGTGAGCATGCAGGAGAGAACAGATAGGAGAGAAGTAA  948
      ||||||||| ||||||||||||||| | ||||||||||||| |||| | |
seq2  GCAAGGACATCTAGTGAGCATGCAGTAAAGAACAGATAGGAAAGAAATTA  950

seq1  AATTAGAAACAGAAGAATTGGGGCTA-GAGAGATGGCTCAACCATTAAGA  997
      |||||| |||||||| |||||||||| ||||||| |||| |||| || ||
seq2  AATTAG-AACAGAAG-ATTGGGGCTAGGAGAGAT-GCTC-ACCA-TAGGA  995

seq1  GCTCTGACTGCTCTTCTGACGTTCCTGAGT  1027
      |||||||||| |||||||||| ||||||||
seq2  GCTCTGACTGTTCTTCTGACG-TCCTGAGT  1024