BAC Information

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BAC

Clone NameB6Ng01-108H08
Chromosome7 (Build37)
Map Location 78,005,349 - 78,129,664
singlet/doubletdoublet
Overlap genenone
Upstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
Downstream geneLOC665535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108H08.bB6Ng01-108H08.g
ACCDH915638DH915639
length1,0981,004
definitionDH915638|Mus musculus domesticus DNA, BAC clone: B6Ng01-108H08, 5' end.DH915639|Mus musculus domesticus DNA, BAC clone: B6Ng01-108H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,005,349 - 78,006,464)(78,128,653 - 78,129,664)
sequence
gaattcaggagatttagttcatctctgggacacattatcttcttattaca
tgttacttccaggaggttttcgagaaaaacaaaaacaaaagcaacaaata
caaaagggcaaaagttcatagtaaagtttgttcggagcacagcttcaaac
tgagctattttccatttggccaaggcgtattaacttgtgtgttgttcaaa
gccattaaaggcccattttgtttagcttcgctcggtcaagatatcccaga
ttgttgttgttgtttttatcgcatgagatcctgtctgctataatcataaa
tatcactcaacttccattttaatcacttctggggatgaagaactttcaaa
catttcacggcttcccagaactctgcaaaataattctggagcttgtgagc
gtggcctcattagccggactttttgaggtccttagtccaactacagaaag
tcagaagagaaaacacaaatgaaatttttgggcaatttctggggaacaga
ttttgcaagcccaaacagatgaaccataagttcagcgatgttaaaatacc
ataagcaaaattaaaataccaacactgggaagagaagaacacgcaatggg
aaaaggaagagaaacttttctcacccttacccagggatgtctttcctaag
ctgtcttcaaatcctgggaaattcaagaaggatcaagaccaacaataggc
aggcaagggctacgatgcctggtgtataggtagaaagactgaatgatgaa
aataatatgggcacacaagttattttaatataactaacacagtcttttca
gttaaagctttaggaatcatttgttaagctatttatagtcacatgagtga
atagctgctaggagaactttgtaataaagtggatgtgtgttggaatcact
tttctgaagtgtttgtgttcccaaaacattgggtgcgttaaatctggcaa
ttcttttacatcgttcttatattcagatagagtgactaaatgctatgcac
tagagtatatgaaactggaacataggatactggataatatagtgtcaatt
catagcatcatgtaatacgtatatttcagtgtatatgattagtctctg
gaattctttaaagaaacctcaaaaggtgtgtggtcctccaagactcgatt
cttaccttttcccttctataccaaaccaatgtgagatgagcttaacagca
attcactaacaggaacattccaacattcctagcagctgctgttcccaggt
gtctgctctgggtaagcagtttctacacttggtactttagacttggattg
tgtctgtggaaggaaattcacagtctatatgaatcttctgaggggcctaa
gaaatgcagttgattttctctgtccagctttatcttgttacacatgaaga
gggtttgctgatatgtaaacccattgtccactgatgttaggagcaaaagt
ccatacaaagtctaaaaactaaaaacaatggcagttaataaacaagaagt
ctggatttgagaaccactgaagtagggaaggccttcttaaagcagaggaa
agccaaatcattcattaattcaagagccttaggaagttcaagagagaaag
agtggaaagaggaactgggaagtcgctggtgttgctacagtaaatattga
tgattgatttgcacatgcctgaaggaagatgagaaagcacaggctcaaac
aaaagaactactactaagagtggaccagctcaaccagaacccatgacctg
tgggaagaagagaagacagagagagaaaccagtgtagactcaaatgtttc
aaagggctgtagaggcagaagctgtgcaacttccacagaaataaagcaga
agatagaaggcaaaatcctgggatgggtgtaaagttgctaggctgaagca
ctcattaacatgttggcagctaagacatttgggggagcttggggattctg
tggaagatggagaggaaggaatataggagccacaggatcaaggacaccac
aaagccccacagaatcaattacctgggctcacaggaaattcagagactga
attagcaccagggagcctgctgagactgacctagtctctgcacaaatgta
cagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_78005349_78006464
seq2: B6Ng01-108H08.b_48_1145

seq1  GAATTCAGGAGATTTAGTTCATCTCTGGGACACATTATCTTCTTATTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGATTTAGTTCATCTCTGGGACACATTATCTTCTTATTACA  50

seq1  TGTTACTTCCAGGAGGTTTTCGAGAAAAACAAAAACAAAAGCAACAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTTCCAGGAGGTTTTCGAGAAAAACAAAAACAAAAGCAACAAATA  100

seq1  CAAAAGGGCAAAAGTTCATAGTAAAGTTTGTTCGGAGCACAGCTTCAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGGCAAAAGTTCATAGTAAAGTTTGTTCGGAGCACAGCTTCAAAC  150

seq1  TGAGCTATTTTCCATTTGGCCAAGGCGTATTAACTTGTGTGTTGTTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTATTTTCCATTTGGCCAAGGCGTATTAACTTGTGTGTTGTTCAAA  200

seq1  GCCATTAAAGGCCCATTTTGTTTAGCTTCGCTCGGTCAAGATATCCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTAAAGGCCCATTTTGTTTAGCTTCGCTCGGTCAAGATATCCCAGA  250

seq1  TTGTTGTTGTTGTTTTTATCGCATGAGATCCTGTCTGCTATAATCATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGTTTTTATCGCATGAGATCCTGTCTGCTATAATCATAAA  300

seq1  TATCACTCAACTTCCATTTTAATCACTTCTGGGGATGAAGAACTTTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTCAACTTCCATTTTAATCACTTCTGGGGATGAAGAACTTTCAAA  350

seq1  CATTTCACGGCTTCCCAGAACTCTGCAAAATAATTCTGGAGCTTGTGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCACGGCTTCCCAGAACTCTGCAAAATAATTCTGGAGCTTGTGAGC  400

seq1  GTGGCCTCATTAGCCGGACTTTTTGAGGTCCTTAGTCCAACTACAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTCATTAGCCGGACTTTTTGAGGTCCTTAGTCCAACTACAGAAAG  450

seq1  TCAGAAGAGAAAACACAAATGAAATTTTTGGGCAATTTCTGGGGAACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGAGAAAACACAAATGAAATTTTTGGGCAATTTCTGGGGAACAGA  500

seq1  TTTTGCAAGCCCAAACAGATGAACCATAAGTTCAGCGATGTTAAAATACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAAGCCCAAACAGATGAACCATAAGTTCAGCGATGTTAAAATACC  550

seq1  ATAAGCAAAATTAAAATACCAACACTGGGAAGAGAAGAACACGCAATGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAAAATTAAAATACCAACACTGGGAAGAGAAGAACACGCAATGGG  600

seq1  AAAAGGAAGAGAAACTTTTCTCACCCTTACCCAGGGATGTCTTTCCTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAGAGAAACTTTTCTCACCCTTACCCAGGGATGTCTTTCCTAAG  650

seq1  CTGTCTTCAAATCCTGGGAAATTCAAGAAGGATCAAGACCAACAATAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCAAATCCTGGGAAATTCAAGAAGGATCAAGACCAACAATAGGC  700

seq1  AGGCAAGGGCTACGATGCCTGGTGTATAGGTAGAAAGACTGAATGATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGGGCTACGATGCCTGGTGTATAGGTAGAAAGACTGAATGATGAA  750

seq1  AATAATATGGGCACACAAGTTATTTTAATATAACTAACACAGTCTTTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATGGGCACACAAGTTATTTTAATATAACTAACACAGTCTTTTCA  800

seq1  GTTAAAGCTTTAGGAATCATTTGTTAAGCTATTTATAGTCACATGAGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGCTTTAGGAATCATTTGTTAAGCTATTTATAGTCACATGAGTGA  850

seq1  ATAGCTGCTAGGAGAACTTTGTAATAAAGTGGATGTGTGTTGGAATCAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATAGCTGCTAGGAGAACTTTGTAATAAAGTGGATGTGTGTTGGAATC-AC  899

seq1  TTTTCTGAAGTGTTTGTGTTCCCAAAACATTGGGTGCGTTAAATCTGGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGAAGTGTTTGTGTTCCCAAAACATTGGGTGCGTTAAATCTGGCA  949

seq1  ATTCTTTTACAATCGTTCTTATAATTCAGATAGAAGTGACTAAATGCTAT  1000
      |||||||||| ||||||||||| |||||||||| ||||||||||||||||
seq2  ATTCTTTTAC-ATCGTTCTTAT-ATTCAGATAG-AGTGACTAAATGCTAT  996

seq1  GCACTAGAGTATTATGAAACCTGGAAACCATAGGAATACTTGGATAATAT  1050
      ||||||||||| ||||||| ||||||  |||||| |||| ||||||||||
seq2  GCACTAGAGTA-TATGAAA-CTGGAA--CATAGG-ATAC-TGGATAATAT  1040

seq1  AGTGTCAAATTTCAATAGCATCATGTAATACCGTAATATTTCAGTGTTAT  1100
      ||||||||  ||| |||||||||||||||| ||| ||||||||||||   
seq2  AGTGTCAA--TTC-ATAGCATCATGTAATA-CGT-ATATTTCAGTGT--A  1083

seq1  TATGATGTAGTCTCTG  1116
      |||||| |||||||||
seq2  TATGAT-TAGTCTCTG  1098

seq1: chr7_78128653_78129664
seq2: B6Ng01-108H08.g_67_1070 (reverse)

seq1  ACTGTAACATATGTGCAGAGGGCCTAGGTCAGTCTCAGGCAGGCTCCCTG  50
      ||||| |||| ||||||||  | |||||||||||||| ||||||||||||
seq2  ACTGT-ACATTTGTGCAGA--GACTAGGTCAGTCTCA-GCAGGCTCCCTG  46

seq1  GTTGCTAATTCAGTCTCTGAATTTCCTGTGAGCCCAGGTTAATTGATTCT  100
      | |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  G-TGCTAATTCAGTCTCTGAATTTCCTGTGAGCCCAGG-TAATTGATTCT  94

seq1  GTGGGGGCTTTGTGGTGTCCTTGATTCCTGTGGCTCCTATATTCCTTCCT  150
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GT-GGGGCTTTGTGGTGTCCTTGA-TCCTGTGGCTCCTATATTCCTTCCT  142

seq1  CTCCATCTTCCACAGAATCCCCAAGCTCCCCCAAATGTCTTAGCTGCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTTCCACAGAATCCCCAAGCTCCCCCAAATGTCTTAGCTGCCAA  192

seq1  CATGTTAATGAGTGCTTCAGCCTAGCAACCTTACACCCATCCCAGGATTT  250
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CATGTTAATGAGTGCTTCAGCCTAGCAACTTTACACCCATCCCAGGATTT  242

seq1  TGCCTTCTATCTTCTGCCTTATTTCTGTGGAAGTTGCACAGCTTCTGCCT  300
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGCCTTCTATCTTCTGCTTTATTTCTGTGGAAGTTGCACAGCTTCTGCCT  292

seq1  CTACAGCCCTTTGAAACATTTGAGTCTACACTGGTTTCTCTCTCTGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCCCTTTGAAACATTTGAGTCTACACTGGTTTCTCTCTCTGTCTT  342

seq1  CTCTTCTTCCCACAGGTCATGGGTTCTGGTTGAGCTGGTCCACTCTTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTCCCACAGGTCATGGGTTCTGGTTGAGCTGGTCCACTCTTAGT  392

seq1  AGTAGTTCTTTTGTTTGAGCCTGTGCTTTCTCATCTTCCTTCAGGCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTCTTTTGTTTGAGCCTGTGCTTTCTCATCTTCCTTCAGGCATGT  442

seq1  GCAAATCAATCATCAATATTTACTGTAGCAACACCAGCGACTTCCCAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCAATCATCAATATTTACTGTAGCAACACCAGCGACTTCCCAGTT  492

seq1  CCTCTTTCCACTCTTTCTCTCTTGAACTTCCTAAGGCTCTTGAATTAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCCACTCTTTCTCTCTTGAACTTCCTAAGGCTCTTGAATTAATG  542

seq1  AATGATTTGGCTTTCCTCTGCTTTAAGAAGGCCTTCCCTACTTCAGTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTGGCTTTCCTCTGCTTTAAGAAGGCCTTCCCTACTTCAGTGGT  592

seq1  TCTCAAATCCAGACTTCTTGTTTATTAACTGCCATTGTTTTTAGTTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAATCCAGACTTCTTGTTTATTAACTGCCATTGTTTTTAGTTTTTA  642

seq1  GACTTTGTATGGACTTTTGCTCCTAACATCAGTGGACAATGGGTTTACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGTATGGACTTTTGCTCCTAACATCAGTGGACAATGGGTTTACAT  692

seq1  ATCAGCAAACCCTCTTCATGTGTAACAAGATAAAGCTGGACAGAGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAAACCCTCTTCATGTGTAACAAGATAAAGCTGGACAGAGAAAAT  742

seq1  CAACTGCATTTCTTAGGCCCCTCAGAAGATTCATATAGACTGTGAATTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCATTTCTTAGGCCCCTCAGAAGATTCATATAGACTGTGAATTTC  792

seq1  CTTCCACAGACACAATCCAAGTCTAAAGTACCAAGTGTAGAAACTGCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACAGACACAATCCAAGTCTAAAGTACCAAGTGTAGAAACTGCTTA  842

seq1  CCCAGAGCAGACACCTGGGAACAGCAGCTGCTAGGAATGTTGGAATGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGCAGACACCTGGGAACAGCAGCTGCTAGGAATGTTGGAATGTTC  892

seq1  CTGTTAGTGAATTGCTGTTAAGCTCATCTCACATTGGTTTGGTATAGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGTGAATTGCTGTTAAGCTCATCTCACATTGGTTTGGTATAGAAG  942

seq1  GGAAAAGGTAAGAATCGAGTCTTGGAGGACCACACACCTTTTGAGGTTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGTAAGAATCGAGTCTTGGAGGACCACACACCTTTTGAGGTTTC  992

seq1  TTTAAAGAATTC  1012
      ||||||||||||
seq2  TTTAAAGAATTC  1004