BAC Information

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BAC

Clone NameB6Ng01-108I21
Chromosome7 (Build37)
Map Location 63,548,131 - 63,713,406
singlet/doubletdoublet
Overlap genep
Upstream geneLOC668796, Siglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2
Downstream geneLOC100040839, Gabrg3, Gabra5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108I21.bB6Ng01-108I21.g
ACCDH915710DH915711
length1,188896
definitionDH915710|Mus musculus domesticus DNA, BAC clone: B6Ng01-108I21, 5' end.DH915711|Mus musculus domesticus DNA, BAC clone: B6Ng01-108I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,712,213 - 63,713,406)(63,548,131 - 63,549,026)
sequence
gaattctaaaatacctcttttgttcccgcccctgcatcccttcaatatat
gtaatgaacacattattttcaccccacccccaccccggtcttttcatagg
agatatcctgttttgtattttgaatgtgctgccatggtaacaacactcag
tgatggatactaaacccagagatagttaaggccagtcaagagtaaacacc
tgtcctccttgggccagacaaagcccttccagagaacactttcaggtctt
ccttggagctatagggactgttccctgctatacgtaagaagccctgcccc
tggcctaagcatggttaccagagaaggacaaggtcaaaacagggttcata
ctactgacaaggcctagctagacaggccattcagagctggcaaatcttct
ggtctgcttaccatcttctcaagctaattaggttagaatttgaatggctc
acaaccacaagtcataactaacagtataccgtattacattcctcctcctc
ctctttctctttatcttcttcctctccctctccctcctagagcacacaaa
attattcaactgcctgctctcaagaccatctcaagccccacatatcattg
tctccattctaggagttttcgattgcttctctcttttgacccatgccaca
gctaccctggcatctggcagtctgtctcccagtgctaaatgtaacacaaa
gtcagactacttttctcctcctagagaactcctacatttgaatgcagctg
tgacttctttactccttgacttactgatgtttgttttcaggaaatctagc
tcacttgataccacatcaacccctgcccattctccacgcctctgagacat
ccacccccattcccgaatgccctggcttcagtcctgtctccagtcctgtc
tcccactggcaatcttcagtcttcccattttactgcaagcagaagaaatg
ttctttcagaggtaagtcttgatttattttgttcactcctgttgacgtgc
ataaccctatcacacctaccttcctcttgctgtaccctggtgtgcagccc
ttcaccagaagcttggcattccactccaaagcaggaggcctcacaaaact
cacttcctccgatcattttctccttggaaacaatgacttaagcttacatg
acagcagtcacatctcccttccacttgcttactgttcc
gaattcactcttgcacctgcgtgcaaggcttgtttactagttaggcacag
cggaggcccgcgccatcttataatggcgattgctcgcggcacacccggct
ctcctcagagattactggcggcacacatgcgattgctcgcagcacgtacc
ggctttccacaacagctgaggagtatgctcccatgtttgtgcaacacaca
ggcagggatgtaggagctgaggagaaggacactgtgcagtgcccactgtc
atgggaagaactgggaattcggaggggcttcttttcctcataggccctgc
ctgaccgagagcttgaccttcaacatgcattgctgtggacaccattattt
tttgccagtttcagaatgctttttttttttttttagacagggtttctatg
tatagccctagctgtcctggaactcactctgtagaccaggctggcctcga
attcagaaatccgtctgcctctgcctcccaagtgctgggattaaaggcgt
gcgccaccatgcccggcttcagaatgcttttaattcccatcgtgatttct
cacctgataatcaggagtttgatatcctataacttggatgtaggtatggg
ttggttcattcatgggggttcctgacctttgatgggcccatgaacttgga
tgggaattttatgccagctgtacatagtgtatgcaggaagacagtcgtga
atactaggtacatatcatccagaactcaagcaatagtcactcaacataga
gccaattgtctgtgtagtagtgaaagggctgcagtggtaagcagccaagt
atagggattggatcaaatggctggatgtacattgctttgtgagctttcct
aggtgtgtgtgtctcattgtgtgtgtgtgtggtgagtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_63712213_63713406
seq2: B6Ng01-108I21.b_48_1235 (reverse)

seq1  GGAACAGTAAGCACAGTTGA--GAGGATGTGACCTTGGCTGTCATTGGTA  48
      ||||||||||||| ||| ||  |  ||||||||    ||||||||  || 
seq2  GGAACAGTAAGCA-AGTGGAAGGGAGATGTGAC---TGCTGTCAT--GT-  43

seq1  AAAGCTAAAGTCATTGTTTCTCAGGAGGAAAATGATCTGAGGAAGTGAGT  98
       ||||| |||||||||||||  |||| |||||||||| ||||||||||||
seq2  -AAGCTTAAGTCATTGTTTCCAAGGA-GAAAATGATCGGAGGAAGTGAGT  91

seq1  TTTGTGAG--CTCCTGCCTTTGGAGTGGAATGCCAAGC-TCTGGTGAAGG  145
      ||||||||  |||||| ||||||||||||||||||||| ||||||||| |
seq2  TTTGTGAGGCCTCCTG-CTTTGGAGTGGAATGCCAAGCTTCTGGTGAA-G  139

seq1  GGCTGCACA-CAGGGTACAGCAGAAGGAAGGTAGGTGTGATAGGGTTATG  194
      ||||||||| ||||||||||||  ||||||||||||||||||||||||||
seq2  GGCTGCACACCAGGGTACAGCAAGAGGAAGGTAGGTGTGATAGGGTTATG  189

seq1  CACGTCAACAGGAGTGAAC-AAATAAATCAAGACTTACCTCTGAAAGAAC  243
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CACGTCAACAGGAGTGAACAAAATAAATCAAGACTTACCTCTGAAAGAAC  239

seq1  ATTTCTTCCTGCTTGCAGTAAAATGGGAAGACTGAAGATTGCCAGTGGGG  293
      ||||||| |||||||||||||||||||||||||||||||||||||| |||
seq2  ATTTCTT-CTGCTTGCAGTAAAATGGGAAGACTGAAGATTGCCAGT-GGG  287

seq1  AGACAGGACTGGAGACAGGACTGAAGCCAGGGCATTCGGGAATGGGGGTG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGACTGGAGACAGGACTGAAGCCAGGGCATTCGGGAATGGGGGTG  337

seq1  GATGTCTCAGAGGCGTGGAGAATGGGCAGGGGTTGATGTGGTATCAAGTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTCAGAGGCGTGGAGAATGGGCAGGGGTTGATGTGGTATCAAGTG  387

seq1  AGCTAGATTTCCTGAAAACAAACATCAGTAAGTCAAGGAGTAAAGAAGTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGATTTCCTGAAAACAAACATCAGTAAGTCAAGGAGTAAAGAAGTC  437

seq1  ACAGCTGCATTCAAATGTAGGAGTTCTCTAGGAGGAGAAAAGTAGTCTGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGCATTCAAATGTAGGAGTTCTCTAGGAGGAGAAAAGTAGTCTGA  487

seq1  CTTTGTGTTACATTTAGCACTGGGAGACAGACTGCCAGATGCCAGGGTAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTTACATTTAGCACTGGGAGACAGACTGCCAGATGCCAGGGTAG  537

seq1  CTGTGGCATGGGTCAAAAGAGAGAAGCAATCGAAAACTCCTAGAATGGAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCATGGGTCAAAAGAGAGAAGCAATCGAAAACTCCTAGAATGGAG  587

seq1  ACAATGATATGTGGGGCTTGAGATGGTCTTGAGAGCAGGCAGTTGAATAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGATATGTGGGGCTTGAGATGGTCTTGAGAGCAGGCAGTTGAATAA  637

seq1  TTTTGTGTGCTCTAGGAGGGAGAGGGAGAGGAAGAAGATAAAGAGAAAGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTGCTCTAGGAGGGAGAGGGAGAGGAAGAAGATAAAGAGAAAGA  687

seq1  GGAGGAGGAGGAATGTAATACGGTATACTGTTAGTTATGACTTGTGGTTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGGAATGTAATACGGTATACTGTTAGTTATGACTTGTGGTTG  737

seq1  TGAGCCATTCAAATTCTAACCTAATTAGCTTGAGAAGATGGTAAGCAGAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATTCAAATTCTAACCTAATTAGCTTGAGAAGATGGTAAGCAGAC  787

seq1  CAGAAGATTTGCCAGCTCTGAATGGCCTGTCTAGCTAGGCCTTGTCAGTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATTTGCCAGCTCTGAATGGCCTGTCTAGCTAGGCCTTGTCAGTA  837

seq1  GTATGAACCCTGTTTTGACCTTGTCCTTCTCTGGTAACCATGCTTAGGCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAACCCTGTTTTGACCTTGTCCTTCTCTGGTAACCATGCTTAGGCC  887

seq1  AGGGGCAGGGCTTCTTACGTATAGCAGGGAACAGTCCCTATAGCTCCAAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAGGGCTTCTTACGTATAGCAGGGAACAGTCCCTATAGCTCCAAG  937

seq1  GAAGACCTGAAAGTGTTCTCTGGAAGGGCTTTGTCTGGCCCAAGGAGGAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCTGAAAGTGTTCTCTGGAAGGGCTTTGTCTGGCCCAAGGAGGAC  987

seq1  AGGTGTTTACTCTTGACTGGCCTTAACTATCTCTGGGTTTAGTATCCATC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTTACTCTTGACTGGCCTTAACTATCTCTGGGTTTAGTATCCATC  1037

seq1  ACTGAGTGTTGTTACCATGGCAGCACATTCAAAATACAAAACAGGATATC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTGTTGTTACCATGGCAGCACATTCAAAATACAAAACAGGATATC  1087

seq1  TCCTATGAAAAGACCGGGGTGGGGGTGGGGTGAAAATAATGTGTTCATTA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGAAAAGACCGGGGTGGGGGTGGGGTGAAAATAATGTGTTCATTA  1137

seq1  CATATATTGAAGGGATGCAGGGGCGGGAACAAAAGAGGTATTTTAGAATT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTGAAGGGATGCAGGGGCGGGAACAAAAGAGGTATTTTAGAATT  1187

seq1  C  1194
      |
seq2  C  1188

seq1: chr7_63548131_63549026
seq2: B6Ng01-108I21.g_64_959

seq1  GAATTCACTCTTGCACCTGCGTGCAAGGCTTGTTTACTAGTTAGGCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTTGCACCTGCGTGCAAGGCTTGTTTACTAGTTAGGCACAG  50

seq1  CGGAGGCCCGCGCCATCTTATAATGGCGATTGCTCGCGGCACACCCGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGCCCGCGCCATCTTATAATGGCGATTGCTCGCGGCACACCCGGCT  100

seq1  CTCCTCAGAGATTACTGGCGGCACACATGCGATTGCTCGCAGCACGTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGAGATTACTGGCGGCACACATGCGATTGCTCGCAGCACGTACC  150

seq1  GGCTTTCCACAACAGCTGAGGAGTATGCTCCCATGTTTGTGCAACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCCACAACAGCTGAGGAGTATGCTCCCATGTTTGTGCAACACACA  200

seq1  GGCAGGGATGTAGGAGCTGAGGAGAAGGACACTGTGCAGTGCCCACTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGATGTAGGAGCTGAGGAGAAGGACACTGTGCAGTGCCCACTGTC  250

seq1  ATGGGAAGAACTGGGAATTCGGAGGGGCTTCTTTTCCTCATAGGCCCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAGAACTGGGAATTCGGAGGGGCTTCTTTTCCTCATAGGCCCTGC  300

seq1  CTGACCGAGAGCTTGACCTTCAACATGCATTGCTGTGGACACCATTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCGAGAGCTTGACCTTCAACATGCATTGCTGTGGACACCATTATTT  350

seq1  TTTGCCAGTTTCAGAATGCTTTTTTTTTTTTTTTAGACAGGGTTTCTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAGTTTCAGAATGCTTTTTTTTTTTTTTTAGACAGGGTTTCTATG  400

seq1  TATAGCCCTAGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCCTAGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGA  450

seq1  ATTCAGAAATCCGTCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAAATCCGTCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGT  500

seq1  GCGCCACCATGCCCGGCTTCAGAATGCTTTTAATTCCCATCGTGATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCACCATGCCCGGCTTCAGAATGCTTTTAATTCCCATCGTGATTTCT  550

seq1  CACCTGATAATCAGGAGTTTGATATCCTATAACTTGGATGTAGGTATGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGATAATCAGGAGTTTGATATCCTATAACTTGGATGTAGGTATGGG  600

seq1  TTGGTTCATTCATGGGGGTTCCTGACCTTTGATGGGCCCATGAACTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCATTCATGGGGGTTCCTGACCTTTGATGGGCCCATGAACTTGGA  650

seq1  TGGGAATTTTATGCCAGCTGTACATAGTGTATGCAGGAAGACAGTCGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTTTATGCCAGCTGTACATAGTGTATGCAGGAAGACAGTCGTGA  700

seq1  ATACTAGGTACATATCATCCAGAACTCAAGCAATAGTCACTCAACATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAGGTACATATCATCCAGAACTCAAGCAATAGTCACTCAACATAGA  750

seq1  GCCAATTGTCTGTGTAGTAGTG-AAGGGCTGCAGTGGTAAGCAGGCCAAG  799
      |||||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  GCCAATTGTCTGTGTAGTAGTGAAAGGGCTGCAGTGGTAAGCA-GCCAAG  799

seq1  TATAGGGATTGGATCAAATGGCTGGATGTACATTGCTTTGTGAGCTTTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGATTGGATCAAATGGCTGGATGTACATTGCTTTGTGAGCTTTCC  849

seq1  TAGGTGTGTGTGTCTCAGTGGTGTGTGTGTGT-GTGTGTGTGTGTGTG  896
      ||||||||||||||||| | |||||||||||| ||| |||||||||||
seq2  TAGGTGTGTGTGTCTCA-TTGTGTGTGTGTGTGGTGAGTGTGTGTGTG  896