BAC Information

Click to search

BAC

Clone NameB6Ng01-108L19
Chromosome7 (Build37)
Map Location 27,942,938 - 28,058,141
singlet/doubletdoublet
Overlap geneGm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl
Upstream geneCyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2
Downstream geneLtbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108L19.bB6Ng01-108L19.g
ACCDH915846DH915847
length1,0331,082
definitionDH915846|Mus musculus domesticus DNA, BAC clone: B6Ng01-108L19, 5' end.DH915847|Mus musculus domesticus DNA, BAC clone: B6Ng01-108L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,942,938 - 27,943,972)(28,057,067 - 28,058,141)
sequence
gaattctgcactggggagaaggggacaattcagagactaggttcggtgag
ggctaacacaaccagtacctggggctccctcccaggctctgccaaccacc
ttaggggctggggtgtagctatgtgagatcacttgcccagcaccgcaggg
ccctgtgttaggtgccaacaacagaaagagtctgggtgaggggctcacac
tcaagtctgtgggtcacactgttttacccacagggcacattcgtgattcc
cctacttgtgtctgcacaccgggatcccacccaattcaaggaccctgacc
atttcaatcccaccaatttcctggatgaccatggcgagttccagaacaac
gatgccttcatgccctttgccttaggtctggggtaggagggaggggacct
gagtggctagcactgggggactggcaggggcttgctcatcccacacctgc
acccacacccacaggaaagcggatgtgcctgggtgctggcctagcccgtt
ccgagatcttcctcttcctgacggctatcctgcagaagttctccctgctc
cctgtgggaagtcctgccaacatcaaccttaacccacagtgtactggtct
gggtaatgtgcccccagccttccagctccgcttggtggcccgctgagctt
gggcttcactggtgatctcagtggccctgatatccttacctgccctaact
gtatgtgtaaatctctttacagagaggaatacaagtgtgtgcagctctga
ggtaaacttttatttcttggctggcagaacctccatacccatgctcgtca
tggcaccctactctgcccagacagtggcagcccagtccatacactgccac
agccaaagagggctgggggagtcactttccattccaggcccggaggagtg
gggacgaggtgagatgacacccactccccaacatatcttttcagcagagg
ccatgactcactcaaccccaaatcctgctcttctcgctctacactcaacg
gaccagacacagccatcgttatgatccgccagc
gaattctgtttgttttatttgagatagagtttctttgtgtagcttttgct
gccctggaactatgaagaccaggctggccttgaactcagagagatccaac
tcttctactcccaagtgctgggactagaggtgtgcaccaccagaaatcta
cctgtcatatggaattctgaaggaggtaaaatggcagtgccaatcttgaa
aataaactgtcaggcatggtgcatgcctttaatcccagcacttgggagcc
agagataggtggatctctgtgagtttcaggccaacctgttctatgtaaag
agaccttgtctaaaccaacaagcaaacacaaaacaaaacccaaaatctat
ccacatataaaatctatctatatctacatttatatatttctctctctctc
tctctctctctctctctctctctatatatatatatatatatatatatata
tatataaaaggcatagtcccaagtctcccaccttgaaccatgctctgcct
cactgtacaattaaaatgcgctaattttatgtgtttggctttttaaataa
ttaaaaaattaagctgaagaagttctaagaacttaattattaatattttc
taaatctgctggacctggtgctttatgcccagcatttgttcaaggctatc
ttcagctacgtagggcatttgaggccagcctgggctacatgagactctct
ttaaaactcagcttcttgctgagccccaccaacgtgacgttcaggtgttt
tcatggagggtatcgagcggcctatgggcctttgggtcccatcctggaaa
gctggtcgcaactgtagatgctattgatcagaagagggtgttagtggacg
gaccctgcactcagtgtcctcattttcaaatgcatgcagcttactggctt
catcctcgagtcccgcaccggtgccggccagaagtatgtacgaaaagctt
gggagaggcagaatatcaattgcgaagtggggcagcccacagatgggcct
aaagaaaattagtgccaagaaaaagttagcccagatgaccagaattttga
tcgtcttccaagtcatgaggctatgaaacgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_27942938_27943972
seq2: B6Ng01-108L19.b_46_1078

seq1  GAATTCTGCACTGGGGAGAAGGGGACAATTCAGAGACTAGGTTCGGTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCACTGGGGAGAAGGGGACAATTCAGAGACTAGGTTCGGTGAG  50

seq1  GGCTAACACAACCAGTACCTGGGGCTCCCTCCCAGGCTCTGCCAACCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACACAACCAGTACCTGGGGCTCCCTCCCAGGCTCTGCCAACCACC  100

seq1  TTAGGGGCTGGGGTGTAGCTATGTGAGATCACTTGCCCAGCACCGCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGCTGGGGTGTAGCTATGTGAGATCACTTGCCCAGCACCGCAGGG  150

seq1  CCCTGTGTTAGGTGCCAACAACAGAAAGAGTCTGGGTGAGGGGCTCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGTTAGGTGCCAACAACAGAAAGAGTCTGGGTGAGGGGCTCACAC  200

seq1  TCAAGTCTGTGGGTCACACTGTTTTACCCACAGGGCACATTCGTGATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCTGTGGGTCACACTGTTTTACCCACAGGGCACATTCGTGATTCC  250

seq1  CCTACTTGTGTCTGCACACCGGGATCCCACCCAATTCAAGGACCCTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTGTGTCTGCACACCGGGATCCCACCCAATTCAAGGACCCTGACC  300

seq1  ATTTCAATCCCACCAATTTCCTGGATGACCATGGCGAGTTCCAGAACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAATCCCACCAATTTCCTGGATGACCATGGCGAGTTCCAGAACAAC  350

seq1  GATGCCTTCATGCCCTTTGCCTTAGGTCTGGGGTAGGAGGGAGGGGACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTTCATGCCCTTTGCCTTAGGTCTGGGGTAGGAGGGAGGGGACCT  400

seq1  GAGTGGCTAGCACTGGGGGACTGGCAGGGGCTTGCTCATCCCACACCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCTAGCACTGGGGGACTGGCAGGGGCTTGCTCATCCCACACCTGC  450

seq1  ACCCACACCCACAGGAAAGCGGATGTGCCTGGGTGCTGGCCTAGCCCGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACCCACAGGAAAGCGGATGTGCCTGGGTGCTGGCCTAGCCCGTT  500

seq1  CCGAGATCTTCCTCTTCCTGACGGCTATCCTGCAGAAGTTCTCCCTGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGATCTTCCTCTTCCTGACGGCTATCCTGCAGAAGTTCTCCCTGCTC  550

seq1  CCTGTGGGAAGTCCTGCCAACATCAACCTTAACCCACAGTGTACTGGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGGAAGTCCTGCCAACATCAACCTTAACCCACAGTGTACTGGTCT  600

seq1  GGGTAATGTGCCCCCAGCCTTCCAGCTCCGCTTGGTGGCCCGCTGAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATGTGCCCCCAGCCTTCCAGCTCCGCTTGGTGGCCCGCTGAGCTT  650

seq1  GGGCTTCACTGGTGATCTCAGTGGCCCTGATATCCTTACCTGCCCTAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCACTGGTGATCTCAGTGGCCCTGATATCCTTACCTGCCCTAACT  700

seq1  GTATGTGTAAATCTCTTTACAGAGAGGAATACAAGTGTGTGCAGCTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTAAATCTCTTTACAGAGAGGAATACAAGTGTGTGCAGCTCTGA  750

seq1  GGTAAACTTTTATTTCTTGGCTGGCAGAACCTCCATACCCATGCTCGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACTTTTATTTCTTGGCTGGCAGAACCTCCATACCCATGCTCGTCA  800

seq1  TGGCACCCTACTCTGCCCAGACAGTGGCAGCCCAGTCCATACACTGCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCCTACTCTGCCCAGACAGTGGCAGCCCAGTCCATACACTGCCAC  850

seq1  AGCCAAAG-GGGCT-GGGGAGTCACTTCACATTCCAGG-CCGGAGGAGTG  897
      |||||||| ||||| ||||||||||||  ||||||||| |||||||||||
seq2  AGCCAAAGAGGGCTGGGGGAGTCACTTTCCATTCCAGGCCCGGAGGAGTG  900

seq1  GGGACGAGGGTGAGATGACACCCACACCCCAACACACCTTTCCAGCAAGA  947
      ||||||| ||||||||||||||||| |||||||| | |||| |||| |||
seq2  GGGACGA-GGTGAGATGACACCCACTCCCCAACATATCTTTTCAGC-AGA  948

seq1  GGCCATGACTCACCTCAACCCCAAATCCTGCCTCTTCTCAGCTCTACACT  997
      |||||||||||| ||||||||||||||||| |||||||| ||||||||||
seq2  GGCCATGACTCA-CTCAACCCCAAATCCTG-CTCTTCTC-GCTCTACACT  995

seq1  CAACGGACCAGACACAGCCACCAGTCATGA-CCGCCAGC  1035
      |||||||||||||||||||| | || |||| ||||||||
seq2  CAACGGACCAGACACAGCCATC-GTTATGATCCGCCAGC  1033

seq1: chr7_28057067_28058141
seq2: B6Ng01-108L19.g_67_1148 (reverse)

seq1  CTCGTTTTCATTGGCCTCATGACTTGG-AGACGATC-AAAGTCT-GTCAT  47
      |||| ||||| | |||||||||||||| |||||||| ||| ||| |||||
seq2  CTCG-TTTCA-TAGCCTCATGACTTGGAAGACGATCAAAATTCTGGTCAT  48

seq1  CTTGGCTAACCTTTCTCTGGCACTAATTTTCTT--AGCCCATCTTGTGGC  95
      || ||||||| |||   ||||||||||||||||   ||||||||   |||
seq2  CTGGGCTAACTTTTTCTTGGCACTAATTTTCTTTAGGCCCATCTGTGGGC  98

seq1  TG-CCCACTTCGC-ATTGATA-TCTGCCTTCTCCCAAGCTTTTCGTACAT  142
      || |||||||||| ||||||| |||||| |||||||||||||||||||||
seq2  TGCCCCACTTCGCAATTGATATTCTGCC-TCTCCCAAGCTTTTCGTACAT  147

seq1  ACTTCTGGCCGGCA-CTGTGCGGGAACTCGAGGATGAAGCCAGTGAGCTG  191
      |||||||||||||| | ||||||| ||||||||||||||||||| |||||
seq2  ACTTCTGGCCGGCACCGGTGCGGG-ACTCGAGGATGAAGCCAGTAAGCTG  196

seq1  CATGCATTTG-AAATGAGGACACTGAGTGCAGGGTCCGTCCACTAACACC  240
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CATGCATTTGAAAATGAGGACACTGAGTGCAGGGTCCGTCCACTAACACC  246

seq1  CTCTTCTGATCAATAGCATCTACAGTTGCGACCAGCTTTCCAGGATGGGA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGATCAATAGCATCTACAGTTGCGACCAGCTTTCCAGGATGGGA  296

seq1  CCCAAAGGCCCATAGGCCGCTCGGTACCCTCCATG-AAACACCTGAACGT  339
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  CCCAAAGGCCCATAGGCCGCTCGATACCCTCCATGAAAACACCTGAACGT  346

seq1  CACGTTGGTGGGGCTCAGCAAGAAGCTGAGTTTTAAAGAGAGTCTCATGT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTGGTGGGGCTCAGCAAGAAGCTGAGTTTTAAAGAGAGTCTCATGT  396

seq1  AGCCCAGGCTGGCCTCAAATGCCCTACGTAGCTGAAGATAGCCTTGAACA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGCTGGCCTCAAATGCCCTACGTAGCTGAAGATAGCCTTGAACA  446

seq1  AATGCTGGGCATAAAGCACCAGGTCCAGCAGATTTAGAAAATATTAATAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGGGCATAAAGCACCAGGTCCAGCAGATTTAGAAAATATTAATAA  496

seq1  TTAAGTTCTTAGAACTTCTTCAGCTTAATTTTTTAATTATTTAAAAAGCC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTCTTAGAACTTCTTCAGCTTAATTTTTTAATTATTTAAAAAGCC  546

seq1  AAACACATAAAATTAGCGCATTTTAATTGTACAGTGAGGCAGAGCATGGT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATAAAATTAGCGCATTTTAATTGTACAGTGAGGCAGAGCATGGT  596

seq1  TCAAGGTGGGAGACTTGGGACTATGCCTTTTATATATATATATATATATA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTGGGAGACTTGGGACTATGCCTTTTATATATATATATATATATA  646

seq1  TATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAA  689
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAA  696

seq1  TATATAAATGTAGATATAGATAGATTTTATATGTGGATAGATTTTGGGTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAATGTAGATATAGATAGATTTTATATGTGGATAGATTTTGGGTT  746

seq1  TTGTTTTGTGTTTGCTTGTTGGTTTAGACAAGGTCTCTTTACATAGAACA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTGTTTGCTTGTTGGTTTAGACAAGGTCTCTTTACATAGAACA  796

seq1  GGTTGGCCTGAAACTCACAGAGATCCACCTATCTCTGGCTCCCAAGTGCT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCCTGAAACTCACAGAGATCCACCTATCTCTGGCTCCCAAGTGCT  846

seq1  GGGATTAAAGGCATGCACCATGCCTGACAGTTTATTTTCAAGATTGGCAC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTAAAGGCATGCACCATGCCTGACAGTTTATTTTCAAGATTGGCAC  896

seq1  TGCCATTTTACCTCCTTCAGAATTCCATATGACAGGTAGATTTCTGGTGG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTTACCTCCTTCAGAATTCCATATGACAGGTAGATTTCTGGTGG  946

seq1  TGCACACCTCTAGTCCCAGCACTTGGGAGTAGAAGAGTTGGATCTCTCTG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACCTCTAGTCCCAGCACTTGGGAGTAGAAGAGTTGGATCTCTCTG  996

seq1  AGTTCAAGGCCAGCCTGGTCTTCATAGTTCCAGGGCAGCAAAAGCTACAC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGGCCAGCCTGGTCTTCATAGTTCCAGGGCAGCAAAAGCTACAC  1046

seq1  AAAGAAACTCTATCTCAAATAAAACAAACAGAATTC  1075
      ||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACTCTATCTCAAATAAAACAAACAGAATTC  1082