BAC Information

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BAC

Clone NameB6Ng01-108M20
Chromosome7 (Build37)
Map Location 89,856,534 - 89,857,635
singlet/doubletsinglet
Overlap geneEftud1
Upstream gene2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3, Adamtsl3, 1700129I04Rik
Downstream geneLOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160, Tmc3, Stard5, Il16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108M20.b
ACCDH915890
length1,085
definitionDH915890|Mus musculus domesticus DNA, BAC clone: B6Ng01-108M20, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtttgacattatcttaaggattttaaagataagttttacagga
aagtataaatctattaaggtttttctttctttggttttgttttcgttttt
aatgttttctgagatagaggtatttccttggcaccttgacgctagcttgt
agaaaggagacttttgaatgatcaccagaaggatgagttttgagtggtga
cagtttttataaaaactttacacagcttaatctttcagaaagtcagagtg
tgtggcttagaggaactggatgttagatgaagaagcatgattcaattatg
atctaaaacctgaagatatatggccaacaagtagatatggagcaactcag
aagtgcattttaaaatcataatagagtgctcctttataatcatcagaagg
gtaaaactattgcaatctggtaaccccttgtgttgtatttgtggaactgt
ggatatgctttgaaggatacatgatacccagatactgcaattttaactca
aaagagaaggtttagtagactcttaaacaaagaacgcacacaagaatgtt
aatagtgctcatgttcatgagagaacggcaaattaaatgcttaccaatgc
aaattatattgttatgaaatggaatgttgtgcatgagtaaaaatgaatga
tgttagattatcaattttggacagtcttgcaactgaatagaaaacatgca
gtttgcagaatttctatgtaaaagttaaaagcatgtaaatactgcagatt
atttagaagcaggtgtccaaggttttttgtttttttggtttttaaaaaaa
aaaaaaaaagcaaattcaaggtaattaacttacaaaagatggaactgcca
tgggatgctggtaatggcctgcagctttgggcagtggcttacgtcatttc
ttttttgtttttttcttattttattttggcttttgaagacagggtctctg
tgtagcctggcttgtcctggaactcactttgtagactaggctggcttcgg
actcagaatttgtctgctcctgccttccaagtgcttggattacaggcatg
ccgcacatgcatgccggctcatttcttttgccttt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_89856534_89857635
seq2: B6Ng01-108M20.b_47_1131

seq1  GAATTCAGTTTGACATTATCTTAAGGATTTTAAAGATAAGTTTTACAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTGACATTATCTTAAGGATTTTAAAGATAAGTTTTACAGGA  50

seq1  AAGTATAAATCTATTAAGGTTTTTCTTTCTTTGGTTTTGTTTTCGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAAATCTATTAAGGTTTTTCTTTCTTTGGTTTTGTTTTCGTTTTT  100

seq1  AATGTTTTCTGAGATAGAGGTATTTCCTTGGCACCTTGACGCTAGCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTCTGAGATAGAGGTATTTCCTTGGCACCTTGACGCTAGCTTGT  150

seq1  AGAAAGGAGACTTTTGAATGATCACCAGAAGGATGAGTTTTGAGTGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAGACTTTTGAATGATCACCAGAAGGATGAGTTTTGAGTGGTGA  200

seq1  CAGTTTTTATAAAAACTTTACACAGCTTAATCTTTCAGAAAGTCAGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTATAAAAACTTTACACAGCTTAATCTTTCAGAAAGTCAGAGTG  250

seq1  TGTGGCTTAGAGGAACTGGATGTTAGATGAAGAAGCATGATTCAATTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTAGAGGAACTGGATGTTAGATGAAGAAGCATGATTCAATTATG  300

seq1  ATCTAAAACCTGAAGATATATGGCCAACAAGTAGATATGGAGCAACTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAACCTGAAGATATATGGCCAACAAGTAGATATGGAGCAACTCAG  350

seq1  AAGTGCATTTTAAAATCATAATAGAGTGCTCCTTTATAATCATCAGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCATTTTAAAATCATAATAGAGTGCTCCTTTATAATCATCAGAAGG  400

seq1  GTAAAACTATTGCAATCTGGTAACCCCTTGTGTTGTATTTGTGGAACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACTATTGCAATCTGGTAACCCCTTGTGTTGTATTTGTGGAACTGT  450

seq1  GGATATGCTTTGAAGGATACATGATACCCAGATACTGCAATTTTAACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGCTTTGAAGGATACATGATACCCAGATACTGCAATTTTAACTCA  500

seq1  AAAGAGAAGGTTTAGTAGACTCTTAAACAAAGAACGCACACAAGAATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAGGTTTAGTAGACTCTTAAACAAAGAACGCACACAAGAATGTT  550

seq1  AATAGTGCTCATGTTCATGAGAGAACGGCAAATTAAATGCTTACCAATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGCTCATGTTCATGAGAGAACGGCAAATTAAATGCTTACCAATGC  600

seq1  AAATTATATTGTTATGAAATGGAATGTTGTGCATGAGTAAAAATGAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATATTGTTATGAAATGGAATGTTGTGCATGAGTAAAAATGAATGA  650

seq1  TGTTAGATTATCAATTTTGGACAGTCTTGCAACTGAATAGAAAACATGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGATTATCAATTTTGGACAGTCTTGCAACTGAATAGAAAACATGCA  700

seq1  GTTTGCAGAATTTCTATGTAAAAGTTAAAAGCATGTAAATACTGCAGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAGAATTTCTATGTAAAAGTTAAAAGCATGTAAATACTGCAGATT  750

seq1  ATTTAGAAGCAGGTGTCCAAGGTTTTTTGTTTTTTTGGTTTTT-AAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTTAGAAGCAGGTGTCCAAGGTTTTTTGTTTTTTTGGTTTTTAAAAAAA  800

seq1  AAAAAAAAAGCAAATTCAAGGTAATTAACTTACAAAAGATGGAACTGCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGCAAATTCAAGGTAATTAACTTACAAAAGATGGAACTGCCA  850

seq1  T-GGATGCTGGTAATGGCCTGCAGCTTTGGGCAGTGGGCTTACGTCATTT  898
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGGATGCTGGTAATGGCCTGCAGCTTTGGGCAGT-GGCTTACGTCATTT  899

seq1  CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCTTTTTGAGA  948
      |          |||||| ||||||| || |||| |||||||||||  |||
seq2  C----------TTTTTTGTTTTTTTCTTATTTTATTTTGGCTTTTGAAGA  939

seq1  CAGGGTTCTCTGTGTAGCCCTGGC-TGTCCTGGAACTCACTTTGTAGACT  997
      ||||| ||||||||||| |||||| |||||||||||||||||||||||||
seq2  CAGGG-TCTCTGTGTAG-CCTGGCTTGTCCTGGAACTCACTTTGTAGACT  987

seq1  AGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTG  1047
      |||||||| ||| |||||| ||| || ||||  |||||| ||||||||| 
seq2  AGGCTGGCTTCGGACTCAG-AATTTGTCTGCTCCTGCCTTCCAAGTGCTT  1036

seq1  GGATTACAGGCATGCAGCACCATGCATGCCCGGCTTCAGTTTTCTTTTTG  1097
      ||||||||||||||| ||| |||||||| ||||| |||  |||| |||||
seq2  GGATTACAGGCATGCCGCA-CATGCATG-CCGGC-TCA--TTTC-TTTTG  1080

seq1  CCTTT  1102
      |||||
seq2  CCTTT  1085