BAC Information

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BAC

Clone NameB6Ng01-108O11
Chromosome11 (Build37)7 (Build37)
Map Location 66,720,543 - 66,721,41076,391,594 - 76,391,721
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDnahc9, Gm879, LOC668323
Downstream geneA530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13, Gas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108O11.bB6Ng01-108O11.g
ACCDH915965DH915966
length86947
definitionDH915965|Mus musculus domesticus DNA, BAC clone: B6Ng01-108O11, 5' end.DH915966|Mus musculus domesticus DNA, BAC clone: B6Ng01-108O11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,720,543 - 66,721,410)(76,391,594 - 76,391,721)
sequence
gaattcaagtcttggtcttagtgactggtcacagagaagctgcagcctga
ctatatcacaggttactgtgaggaccaggggacacagagacactgccagg
tacctcaccagcaattggaattgtgtgcctcttccagaccaaggcagtat
aggagaatctgaggtctttgtggagtttcagacacagccttgcagagtgg
agaaaactggtaagtgactcaagaggccatattcaagatcagaatgtggg
ggaagatgatgaacacacacagtaatataagttagggcaatttatccatc
ctggtatatttaggtacttcaaaacattgtattttacaagataggtacac
acacttttacttgttaaattcaccaaataaattatttaaattttaaaaaa
gaaaaagctatgatgtgagaagtctcctaagtcaaaagatctggtattct
ccataaataagatgcaggggcggaggaaggagactcccgccagtgagagg
ctcctcaggacaccaggcaccaagagccatagctgcactgctgtttggat
atttttcagaagaaattgactgtaagaagatgagggtcgtacaaacctga
gcgctgagctcatggaatggaatatttcagtcctgtgtgtgattctgatg
gacttgtgtttataggttcttacagcagaaaacgaaaggaggcgtgcttt
gacccatgtaatgtaaacatccctaggacttgcaatgatgctctgaagag
atgagtgaaatgtgcctcagttaaaaagtgtagttattacccgtggtcct
aaggaacccatcatggagacacccccaaaacagcaggccttgggtactgc
gggggtggggggggaaatg
tttggttggtgatttagtccctgggagctctgaggggggggggggcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_66720543_66721410
seq2: B6Ng01-108O11.b_49_917

seq1  GAATTCAAGTCTTGGTCTTAGTGACTGGTCACAGAGAAGCTGCAGCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCTTGGTCTTAGTGACTGGTCACAGAGAAGCTGCAGCCTGA  50

seq1  CTATATCACAGGTTACTGTGAGGACCAGGGGACACAGAGACACTGCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCACAGGTTACTGTGAGGACCAGGGGACACAGAGACACTGCCAGG  100

seq1  TACCTCACCAGCAATTGGAATTGTGTGCCTCTTCCAGACCAAGGCAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCACCAGCAATTGGAATTGTGTGCCTCTTCCAGACCAAGGCAGTAT  150

seq1  AGGAGAATCTGAGGTCTTTGTGGAGTTTCAGACACAGCCTTGCAGAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAATCTGAGGTCTTTGTGGAGTTTCAGACACAGCCTTGCAGAGTGG  200

seq1  AGAAAACTGGTAAGTGACTCAAGAGGCCATATTCAAGATCAGAATGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTGGTAAGTGACTCAAGAGGCCATATTCAAGATCAGAATGTGGG  250

seq1  GGAAGATGATGAACACACACAGTAATATAAGTTAGGGCAATTTATCCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATGATGAACACACACAGTAATATAAGTTAGGGCAATTTATCCATC  300

seq1  CTGGTATATTTAGGTACTTCAAAACATTGTATTTTACAAGATAGGTACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATATTTAGGTACTTCAAAACATTGTATTTTACAAGATAGGTACAC  350

seq1  ACACTTTTACTTGTTAAATTCACCAAATAAATTATTTAAATTTTAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTTACTTGTTAAATTCACCAAATAAATTATTTAAATTTTAAAAAA  400

seq1  GAAAAAGCTATGATGTGAGAAGTCTCCTAAGTCAAAAGATCTGGTATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGCTATGATGTGAGAAGTCTCCTAAGTCAAAAGATCTGGTATTCT  450

seq1  CCATAAATAAGATGCAGGGGCGGAGGAAGGAGACTCCCGCCAGTGAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAATAAGATGCAGGGGCGGAGGAAGGAGACTCCCGCCAGTGAGAGG  500

seq1  CTCCTCAGGACACCAGGCACCAAGAGCCATAGCTGCACTGCTGTTTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGGACACCAGGCACCAAGAGCCATAGCTGCACTGCTGTTTGGAT  550

seq1  ATTTTTCAGAAGAAATTGACTGTAAGAAGATGAGGGTCGTACAAACCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAGAAGAAATTGACTGTAAGAAGATGAGGGTCGTACAAACCTGA  600

seq1  GCGCTGAGCTCATGGAATGGAATATTTCAGTCCTGTGTGTGATTCTGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGAGCTCATGGAATGGAATATTTCAGTCCTGTGTGTGATTCTGATG  650

seq1  GACTTGTGTTTATAGGTTCTTACAGCAGAAAACGAAAGGAGGCGTGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTGTTTATAGGTTCTTACAGCAGAAAACGAAAGGAGGCGTGCTTT  700

seq1  GACCCATGTAATGTAAACATCCCTAGGACTTGCAATGATGCTCTGAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCATGTAATGTAAACATCCCTAGGACTTGCAATGATGCTCTGAAGAG  750

seq1  ATGAGTGAAATGTGCCTCAGTTAAAAAGTGTAGTTATTACCCGTGGTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGAAATGTGCCTCAGTTAAAAAGTGTAGTTATTACCCGTGGTCCT  800

seq1  AAGGAACCCATCATGGAGACACCCCCAAAACAGCAGGCCTTGGGTACTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACCCATCATGGAGACACCCCCAAAACAGCAGGCCTTGGGTACTGC  850

seq1  GGGGGT-GGGGGGGAAATG  868
      |||||| ||||||||||||
seq2  GGGGGTGGGGGGGGAAATG  869

seq1: chr7_76391594_76391721
seq2: B6Ng01-108O11.g_75_121 (reverse)

seq1  CGCCCCCCCCCCCACACACACACAAAAGAAAGGACTGAAGGAGCTGAAGG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGTTTGCAACCCATAGGAAAACAACAATATTAACCAACCAGACCCCCAGA  100
                                       ||  ||   ||| ||||
seq2  -------------------------------CGCCCCCCCCCCCCTCAGA  19

seq1  GCTCCCAGGGACTAAACCACCAACCAAA  128
      |||||||||||||||| |||||||||||
seq2  GCTCCCAGGGACTAAATCACCAACCAAA  47