BAC Information

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BAC

Clone NameB6Ng01-109C20
Chromosome7 (Build37)16 (Build37)
Map Location 30,763,476 - 30,763,73669,480,621 - 69,481,759
singlet/doubletsingletsinglet
Overlap geneLOC100043796
Upstream geneEif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437
Downstream geneZfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109C20.bB6Ng01-109C20.g
ACCDH916153DH916154
length1,0241,117
definitionDH916153|Mus musculus domesticus DNA, BAC clone: B6Ng01-109C20, 5' end.DH916154|Mus musculus domesticus DNA, BAC clone: B6Ng01-109C20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(30,763,476 - 30,763,736)(69,480,621 - 69,481,759)
sequence
gaattctttgtttagctctgtaccccatttttaatatggttatttggttt
tctggagtctaatttcttgagttctttgttcatgttgcctattggccatc
tatcatatcattagatgttgagaaaacctttgaaaaagttcaataatcct
tcatgataaaagtcttggaaagatcaggaattcaaggcccatacttaagc
acagaaaagcaatatacagcaatccagtagccaatatcaaactaaatgta
gagaaatttgaagtaatcctactaaaatcaggaattagacaaggctgctc
actctctacctacctatttaatatagtactgaagtcctagccagagcaat
ttggcaacaaaaggagatcaaagggatacaaattggaaaggaagaagtca
aaataccactatttgcagatgatatgatagtatacttaagtgaccccaaa
aactccaccagagaactcatacagctgataaacaacttcagcaaagagac
cagatataaggtcaactcaaacaaatcagtagccttcctctactcaaagg
ataaaccagctgagaaataaattagggaaagacaactttcccaatagtca
caataatataaaataatttggtgtcattctaactgagcaagtgaaagatt
tgtatgacaggaacaagtctctcaagaaagaaatcgaataatatctcaga
agatggaaagatttcccatgctcaaagattggcaggattaatatatttaa
aatggccattttgctgaaagcaatctatagctaaaatgcaatccccatca
aaagttctactcaattctttttttttttttttttttttatgggtttggtt
tttcgagacagggtttcttctgtatagccctggctgttctggaactcact
ttgtagaccaggctggcctcgaactcagaaatccacctgtctctgcctcc
tcgagtgctgggattaaagcgtgcgccaccacacccgccttactcattct
ttatgagtagagaaagcattgcaa
gaattcatgtatttcctttcatgtacttaatatttgagttcctttaaaaa
ataagtctaaggaatcttattacattttaaaggagttttgcttatttatc
ttgatcgaagcaaaataaactcataaaaataatagcatttctaagaaaaa
agcatcccaatagtaaagcagatgtttattctctatggttatgttttaaa
taattttaaagattacaaactatataatgaagacaccttacttcttcaat
catttgagattaatgtaccaagcaggaaccgcaatattattcaaaatatt
tatattggtgacaaaaagaacactcttacatagtgaaaataaaatcatca
cagtaaatatgctaatattgccaatattttataaagctgtacattattta
aaatgtccccaaacactttcacttaaatatatatattgtatatttatata
ttttcccatgtggcatgacctttaaagtctccctggaataaaaatccagg
gtctcaaaaatacatggcatatttcttttgtctgatggaattataatatt
tcatatcattctctaatgcagtacagattctctagtagaccaccatgtac
taaaatatctcaggagagcactgtccacatctacatatgcaaacaacctc
actgtaacagatttgtaaagtcatccattttatcctcagctctcagattt
ccaatcatgtgtgaaaacattcatcttcctttaaaaaataaaaataaaaa
aaatcttggcacgctataaatttctgtgtcctgaggctatgacatcatct
tgctatgctcctactaatgttcctctctaaaacaaacaaacaaacaaaca
aacaaacaacaaaacctgttcaggcatagaacacaaagacagacaggaag
ggataaaagcatcaaggagagtatcaaagttccttcaaattgtcatcatc
atcatcattttagaaacgccctatgggaattcagtattatcctttaaaat
gaagggttactaaataattataaatccacttacattgttgaaataatatg
aaaaaaagataattatgttaatttggtattccctcccggagaaaatgcca
tccaaaataattcatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_30763476_30763736
seq2: B6Ng01-109C20.b_867_1071

seq1  -TTTTTTGTTTTTCTGTTT-----TTTTGTTTTTCGAGACAGGGTTTC-T  43
       |||||| ||||| | |||     ||| |||||||||||||||||||| |
seq2  TTTTTTTTTTTTTTTTTTTATGGGTTTGGTTTTTCGAGACAGGGTTTCTT  50

seq1  CTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCT  93
      |||| ||||||||||||| |||||||||||| ||||||||||||||||||
seq2  CTGTATAGCCCTGGCTGTTCTGGAACTCACTTTGTAGACCAGGCTGGCCT  100

seq1  CGAACCCAGAAATCCACCTGCCTCTGCCTCC-CAAGTTCTGGGATTAAAG  142
      ||||| |||||||||||||| |||||||||| | ||| ||||||||||| 
seq2  CGAACTCAGAAATCCACCTGTCTCTGCCTCCTCGAGTGCTGGGATTAAA-  149

seq1  GCGTGTGCCACCACGCCCGGTTGAGCCTCCATGTTTAACATTACCATTTC  192
      ||||| |||||||| ||||                               
seq2  GCGTGCGCCACCACACCCG-------------------------------  168

seq1  CCTAGTGTTTCTCTTTGTGTACAGTGACCTTGCACCTTCTACATAGAAGA  242
                                 |||| | | ||||  ||    ||
seq2  ---------------------------CCTTACTCATTCTTTAT----GA  187

seq1  GTAGAGAAAGCATTTGCAA  261
      |||||||||||| ||||||
seq2  GTAGAGAAAGCA-TTGCAA  205

seq1: chr16_69480621_69481759
seq2: B6Ng01-109C20.g_71_1187

seq1  GAATTCATGTATTTCCTTTCATGTACTTAATATTTGAGTTCCTTTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTATTTCCTTTCATGTACTTAATATTTGAGTTCCTTTAAAAA  50

seq1  ATAAGTCTAAGGAATCTTATTACATTTTAAAGGAGTTTTGCTTATTTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCTAAGGAATCTTATTACATTTTAAAGGAGTTTTGCTTATTTATC  100

seq1  TTGATCGAAGCAAAATAAACTCATAAAAATAATAGCATTTCTAAGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCGAAGCAAAATAAACTCATAAAAATAATAGCATTTCTAAGAAAAA  150

seq1  AGCATCCCAATAGTAAAGCAGATGTTTATTCTCTATGGTTATGTTTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCCAATAGTAAAGCAGATGTTTATTCTCTATGGTTATGTTTTAAA  200

seq1  TAATTTTAAAGATTACAAACTATATAATGAAGACACCTTACTTCTTCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAAAGATTACAAACTATATAATGAAGACACCTTACTTCTTCAAT  250

seq1  CATTTGAGATTAATGTACCAAGCAGGAACCGCAATATTATTCAAAATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAGATTAATGTACCAAGCAGGAACCGCAATATTATTCAAAATATT  300

seq1  TATATTGGTGACAAAAAGAACACTCTTACATAGTGAAAATAAAATCATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGGTGACAAAAAGAACACTCTTACATAGTGAAAATAAAATCATCA  350

seq1  CAGTAAATATGCTAATATTGCCAATATTTTATAAAGCTGTACATTATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAATATGCTAATATTGCCAATATTTTATAAAGCTGTACATTATTTA  400

seq1  AAATGTCCCCAAACACTTTCACTTAAATATATATATTGTATATTTATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCCCCAAACACTTTCACTTAAATATATATATTGTATATTTATATA  450

seq1  TTTTCCCATGTGGCATGACCTTTAAAGTCTCCCTGGAATAAAAATCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCATGTGGCATGACCTTTAAAGTCTCCCTGGAATAAAAATCCAGG  500

seq1  GTCTCAAAAATACATGGCATATTTCTTTTGTCTGATGGAATTATAATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAAATACATGGCATATTTCTTTTGTCTGATGGAATTATAATATT  550

seq1  TCATATCATTCTCTAATGCAGTACAGATTCTCTAGTAGACCACCATGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCATTCTCTAATGCAGTACAGATTCTCTAGTAGACCACCATGTAC  600

seq1  TAAAATATCTCAGGAGAGCACTGTCCACATCTACATATGCAAACAACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATCTCAGGAGAGCACTGTCCACATCTACATATGCAAACAACCTC  650

seq1  ACTGTAACAGATTTGTAAAGTCATCCATTTTATCCTCAGCTCTCAGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAACAGATTTGTAAAGTCATCCATTTTATCCTCAGCTCTCAGATTT  700

seq1  CCAATCATGTGTGAAAACATTCATCTTCCTTTAAAAAATAAAAATAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCATGTGTGAAAACATTCATCTTCCTTTAAAAAATAAAAATAAAAA  750

seq1  AAATCTTGGCACGCTATAAATTTCTGTGTCCTGAGGCTATGACATCATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTGGCACGCTATAAATTTCTGTGTCCTGAGGCTATGACATCATCT  800

seq1  TGCTATGCTCCTACTAATGTTCCTCTCTAAAAACAAAACAAAACAAAACA  850
      ||||||||||||||||||||||||||||||||        |||||||   
seq2  TGCTATGCTCCTACTAATGTTCCTCTCTAAAA-------CAAACAAA--C  841

seq1  AAACAAAACAAAACAAACAA-AAAACCTGTTCAGGCATAGAAACACCAAA  899
      |||||||   |||||||||| |||||||||||||||||||||    || |
seq2  AAACAAA--CAAACAAACAACAAAACCTGTTCAGGCATAGAA----CACA  885

seq1  AAGACAAGAACAGGAAAGGGATAAAAGCATCAAGGAAGAGTATCAAAAGT  949
      ||||||   ||||| |||||||||||||||||||| |||||||| |||||
seq2  AAGACA--GACAGG-AAGGGATAAAAGCATCAAGG-AGAGTATC-AAAGT  930

seq1  TCCTTCAAATTGTCATCATCATCATCATATTAGAAAACGCCCTAT-GGAA  998
      |||||||||||||||||||||||||||| |||| ||||||||||| ||||
seq2  TCCTTCAAATTGTCATCATCATCATCATTTTAG-AAACGCCCTATGGGAA  979

seq1  TTCAGTAATATCCTTTAAAAATGAA-GGTTACTAAAT-ATTATAAATTCA  1046
      ||||||| |||||||| |||||||| ||||||||||| ||||||||| ||
seq2  TTCAGTATTATCCTTT-AAAATGAAGGGTTACTAAATAATTATAAATCCA  1028

seq1  CTTACATTGTTGAAATAATATGAAAAAAAAGATAATTATGTT-ATTTGTA  1095
      |||||||||||||||||||||| ||||||||||||||||||| |||||  
seq2  CTTACATTGTTGAAATAATATG-AAAAAAAGATAATTATGTTAATTTGGT  1077

seq1  ATACGCTTCCAGAAAAAAATGCCAATCAAAATAAAATTTCATAC  1139
      || | | ||| | | |||||||||  ||||||||   |||||||
seq2  ATTC-CCTCCCGGAGAAAATGCCATCCAAAATAA---TTCATAC  1117