BAC Information

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BAC

Clone NameB6Ng01-109E03
Chromosome7 (Build37)
Map Location 19,856,425 - 20,005,295
singlet/doubletdoublet
Overlap geneVasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm
Upstream genePsg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3
Downstream geneMark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109E03.bB6Ng01-109E03.g
ACCDH916213DH916214
length322373
definitionDH916213|Mus musculus domesticus DNA, BAC clone: B6Ng01-109E03, 5' end.DH916214|Mus musculus domesticus DNA, BAC clone: B6Ng01-109E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,004,974 - 20,005,295)(19,856,425 - 19,856,803)
sequence
tgcccagaaaggccttgggcaaagatgggggctggtttcagaccctgggg
atgggaacagggcttggtaaatgggggaggtgagttctgaatggtagggc
tgggtctggggctggaaagtgaggatgggaaaacgggcgagggtggggaa
tggtcggaaccttcttagggagtgaaatcagaaaaggcatgtatatgtgc
atgtgtgtgaatgtgtgtaagaggcagagactggaaagtgggtgatgaaa
agccagcatgggcttggccagtgtggaaggggaggagttttaggaactgg
gcgtggagggtttggaagggca
caaccacaacctgagactcaagagttttagggctagggttctctagccag
cctcccacctggttttgagtttgggggcggtaactctgagcccgcttata
ctagatcatccctgcgaggatctgactatctgagaactcagaggtgctcc
ccccaaaagtcttcaaattctgagtcccgagagcgcccctaaacctgaaa
gccatcaagagaacctcagccggcaccgccccaagcctttagggagtagt
gtggagaaacggggtgtcgatatttagagatcgttccagaaggcaccggc
tcagatctgggacgcccaaagcgctgtgtcccctaaatctagccccaaat
gcgctggagggggggagggggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_20004974_20005295
seq2: B6Ng01-109E03.b_55_376 (reverse)

seq1  TGCCCTTCCAAACCCTCCACGCCCAGTTCCTAAAACTCCTCCCCTTCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTCCAAACCCTCCACGCCCAGTTCCTAAAACTCCTCCCCTTCCAC  50

seq1  ACTGGCCAAGCCCATGCTGGCTTTTCATCACCCACTTTCCAGTCTCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCAAGCCCATGCTGGCTTTTCATCACCCACTTTCCAGTCTCTGCC  100

seq1  TCTTACACACATTCACACACATGCACATATACATGCCTTTTCTGATTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACACACATTCACACACATGCACATATACATGCCTTTTCTGATTTCA  150

seq1  CTCCCTAAGAAGGTTCCGACCATTCCCCACCCTCGCCCGTTTTCCCATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTAAGAAGGTTCCGACCATTCCCCACCCTCGCCCGTTTTCCCATCC  200

seq1  TCACTTTCCAGCCCCAGACCCAGCCCTACCATTCAGAACTCACCTCCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTCCAGCCCCAGACCCAGCCCTACCATTCAGAACTCACCTCCCCC  250

seq1  ATTTACCAAGCCCTGTTCCCATCCCCAGGGTCTGAAACCAGCCCCCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCAAGCCCTGTTCCCATCCCCAGGGTCTGAAACCAGCCCCCATCT  300

seq1  TTGCCCAAGGCCTTTCTGGGCA  322
      ||||||||||||||||||||||
seq2  TTGCCCAAGGCCTTTCTGGGCA  322

seq1: chr7_19856425_19856803
seq2: B6Ng01-109E03.g_68_446

seq1  GAATTCCAACCACAACCTGAGACTCAAGAGTTTTAGGGCTAGGGTTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACCACAACCTGAGACTCAAGAGTTTTAGGGCTAGGGTTCTCT  50

seq1  AGCCAGCCTCCCACCTGGTTTTGAGTTTGGGGGCGGTAACTCTGAGCCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCCTCCCACCTGGTTTTGAGTTTGGGGGCGGTAACTCTGAGCCCG  100

seq1  CTTATACTAGATCATCCCTGCGAGGATCTGACTATCTGAGAACTCAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACTAGATCATCCCTGCGAGGATCTGACTATCTGAGAACTCAGAGG  150

seq1  TGCTCCCCCCAAAAGTCTTCAAATTCTGAGTCCCGAGAGCGCCCCTAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCCCAAAAGTCTTCAAATTCTGAGTCCCGAGAGCGCCCCTAAAC  200

seq1  CTGAAAGCCATCAAGAGAACCTCAGCCGGCACCGCCCCAAGCCTTTAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGCCATCAAGAGAACCTCAGCCGGCACCGCCCCAAGCCTTTAGGG  250

seq1  AGTAGTGTGGAGAAACGGGGTGTCGATATTTAGAGATCGTTCCAGAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGTGGAGAAACGGGGTGTCGATATTTAGAGATCGTTCCAGAAGGC  300

seq1  ACCGGCTCAGATCTGGGACGCCCAAAGCGCTGTGTCCCCTAAATCTAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGCTCAGATCTGGGACGCCCAAAGCGCTGTGTCCCCTAAATCTAGCC  350

seq1  CCAAATGCGCTGGAGGGGGGGAGGGGGAC  379
      |||||||||||||||||||||||||||||
seq2  CCAAATGCGCTGGAGGGGGGGAGGGGGAC  379