BAC Information

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BAC

Clone NameB6Ng01-109E24
Chromosome6 (Build37)7 (Build37)
Map Location 146,656,386 - 146,656,91077,776,158 - 77,776,673
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRassf8, Bhlhb3, Sspn, Itpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175
Downstream geneStk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129, Ccdc91, LOC100039712, LOC100039727
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109E24.bB6Ng01-109E24.g
ACCDH916252DH916253
length1,009510
definitionDH916252|Mus musculus domesticus DNA, BAC clone: B6Ng01-109E24, 5' end.DH916253|Mus musculus domesticus DNA, BAC clone: B6Ng01-109E24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,656,386 - 146,656,910)(77,776,158 - 77,776,673)
sequence
gaattcttcatctgcttcagaactactaagagctggcttcctgagctcat
ctagtgacgagtatctcctagagacctccgctaatcaatcttttttcttt
tcttttttcttttccttccttctaatctctccccaggtattcttacctga
cctaaacttttcctcgggttcaagacccttggaaaggcctgtatacttat
tttgtgtaccatattttctctttgctcctactctctctccccgctttact
tctgatagattgccctgaatttcatccagaatccgccctgccttaaccac
ttgataacatgtgaaaaggaacaaaagggcttctaacactagaaaaaatt
caaggccaaacattttccactttacttctgatagactgtcttgaatttcc
ttagaaagttcaaggccaggcttacctcgtaaagctatactcactggtac
tctcgttccccagctgaaaagttctgaattcatgcagttgaatccttctt
aacagtctgctttacgggaacctttattaccgcgacccgcagttctggtt
ctggaatgagggatcttccttgcgccagtcccgagttttttctcgtcccg
gaattcggcaccaattgttattagacgcgttctcacgaccggccaggaag
aacaccacagaccagaatcttctgcggcaaagctttatttcttacatctt
caggagccagagtgtaagaagcaagagagcaagaagcaaagagagagcaa
gaagcaagagagaaaacgaaaccccgtcccttttttaggagagtaatatt
tcgcctaggacgtgtcactccctgactggctgcagcccatcggccgagtt
gacgtcacggggaaaggcagagcacatggagtgaagaaccaccctcggca
catgcgcagattatttgtttaccacttagaacacagctgtcagcgccatc
ttgtaacggcgaatgtggggcgcggctccaacagaaatcttgactctcat
gtttaagct
tatgtggtcctcttcaaggtcagtgcctgcttcacctcttcagctctaga
cttattcctgtgtggttggacaaaagtgacattggaatggaaactgtttc
tttttgatgtgaatacacttggacagagttttgcttcagtgctataaagc
atagcctagttttctctggaaatgtggggaatcaatggggagaggtaaac
aaaactactaggaatggaaaagcattatagacagctcagatttgctccct
cctgggaatatggaacatgagtgcgcccaacgatgctgtctagtgtgcta
cagccgcacatctgagtttactctgaactatgccgccactgataaagttg
aagttcttttttgctcaaatattcaagtttttttttccagccccaagatg
ttctcagcttgcatgccatattgccaaataggttctagatccctgagaat
tgattcatctcctctagtgtggcctcagaggcacttctatggtggtgatg
gtgggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_146656386_146656910
seq2: B6Ng01-109E24.b_52_525 (reverse)

seq1  AATTCAGAACTTTTCAGCTGGGGGAACAGAGTACCAGTGAGTACAGCTTT  50
      ||||||||||||||||||||||| |  |||||||||||||||| ||||||
seq2  AATTCAGAACTTTTCAGCTGGGGAACGAGAGTACCAGTGAGTATAGCTTT  50

seq1  ACGAGGTAAGTCTGGTCTTAAACTTTCTAACGAAATTCAAGACAGTCTAT  100
      |||||||||                                         
seq2  ACGAGGTAA-----------------------------------------  59

seq1  CAGAAGTAAAGTGGAAAATAGCTTTACAAGGTACGCCTGGCCTTGAACTT  150
                                        ||||||||||||||||
seq2  ----------------------------------GCCTGGCCTTGAACTT  75

seq1  TCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGAAAATGGCTTT  200
      ||||| ||||||||||||||||||||||||||||||||||||        
seq2  TCTAAGGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGAAA--------  117

seq1  GCAAGGTATGTTTGGCCTTGAACTTTCTCTAGTGTTAGAAGCCCTTTTGT  250
             ||||||||||||||| ||| |||||||||||||||||||||||
seq2  -------ATGTTTGGCCTTGAATTTTTTCTAGTGTTAGAAGCCCTTTTGT  160

seq1  TCCTTTTCACATGTTATCAAGTGGTTAAGGCAGGGCGGATTCTGGATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCACATGTTATCAAGTGGTTAAGGCAGGGCGGATTCTGGATGAA  210

seq1  GTTCAGGACAATCTATCAGAAGTAAAGCGGGGAGAGAGAATAGGAGCAAA  350
       |||||| ||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTCAGGGCAATCTATCAGAAGTAAAGCGGGGAGAGAGAGTAGGAGCAAA  260

seq1  GAGAAAATATGGTTCACAAAATAAGTATACAGGCCTTTCCAAGGGTCTTG  400
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATATGGTACACAAAATAAGTATACAGGCCTTTCCAAGGGTCTTG  310

seq1  AACCCGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGAGATTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGAGATTAGA  360

seq1  AGGAAGGAGAAGGAAAAAGAAAAGAAAAAAGATCAATTAGAGG-------  493
      |||||||| ||| ||||||||||||||||||||  ||||| ||       
seq2  AGGAAGGAAAAGAAAAAAGAAAAGAAAAAAGATTGATTAGCGGAGGTCTC  410

seq1  --------------------------------AGCCAGTTCTTAGTAGTT  511
                                      |||||| |||||||||||
seq2  TAGGAGATACTCGTCACTAGATGAGCTCAGGAAGCCAGCTCTTAGTAGTT  460

seq1  CTGAATCAGATGAA  525
      ||||| ||||||||
seq2  CTGAAGCAGATGAA  474

seq1: chr7_77776158_77776673
seq2: B6Ng01-109E24.g_66_581

seq1  GAATTCTATGTGGTCCTCTTCAAGGTCAGTGCCTGCTTCACCTCTTCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTGGTCCTCTTCAAGGTCAGTGCCTGCTTCACCTCTTCAGC  50

seq1  TCTAGACTTATTCCTGTGTGGTTGGACAAAAGTGACATTGGAATGGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACTTATTCCTGTGTGGTTGGACAAAAGTGACATTGGAATGGAAAC  100

seq1  TGTTTCTTTTTGATGTGAATACACTTGGACAGAGTTTTGCTTCAGTGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTTTTGATGTGAATACACTTGGACAGAGTTTTGCTTCAGTGCTA  150

seq1  TAAAGCATAGCCTAGTTTTCTCTGGAAATGTGGGGAATCAATGGGGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCATAGCCTAGTTTTCTCTGGAAATGTGGGGAATCAATGGGGAGAG  200

seq1  GTAAACAAAACTACTAGGAATGGAAAAGCATTATAGACAGCTCAGATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAAAACTACTAGGAATGGAAAAGCATTATAGACAGCTCAGATTTG  250

seq1  CTCCCTCCTGGGAATATGGAACATGAGTGCGCCCAACGATGCTGTCTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCTGGGAATATGGAACATGAGTGCGCCCAACGATGCTGTCTAGT  300

seq1  GTGCTACAGCCGCACATCTGAGTTTACTCTGAACTATGCCGCCACTGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTACAGCCGCACATCTGAGTTTACTCTGAACTATGCCGCCACTGATA  350

seq1  AAGTTGAAGTTCTTTTTTGCTCAAATATTCAAGTTTTTTTTTCCAGCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAAGTTCTTTTTTGCTCAAATATTCAAGTTTTTTTTTCCAGCCCC  400

seq1  AAGATGTTCTCAGCTTGCATGCCATATTGCCAAATAGGTTCTAGATCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTTCTCAGCTTGCATGCCATATTGCCAAATAGGTTCTAGATCCCT  450

seq1  GAGAATTGATTCATCTCCTCTAGTGTGGCCTCAGAGGCACTTCTATGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTGATTCATCTCCTCTAGTGTGGCCTCAGAGGCACTTCTATGGTG  500

seq1  GTGATGGTGGGGGGGG  516
      ||||||||||||||||
seq2  GTGATGGTGGGGGGGG  516