BAC Information

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BAC

Clone NameB6Ng01-109K23
Chromosome12 (Build37)7 (Build37)
Map Location 38,553,773 - 38,554,24612,304,568 - 12,305,589
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMeox2, A530016O06Rik
Downstream geneLOC100043139, Dgkb, LOC668824, LOC100043142, Etv1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109K23.bB6Ng01-109K23.g
ACCDH916528DH916529
length1,1071,023
definitionDH916528|Mus musculus domesticus DNA, BAC clone: B6Ng01-109K23, 5' end.DH916529|Mus musculus domesticus DNA, BAC clone: B6Ng01-109K23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,553,773 - 38,554,246)(12,304,568 - 12,305,589)
sequence
gaattctcacttgaggaataccaaatggcagagaagcacctgaaaaaatt
tttcaacatccttaatcatcagggaaatgcaaatcaaaacaaacctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattaaggtgacag
gagatgctggcgaggatgtggagaaagaggaacactcctccatttttggt
gggattgcaagcttgcacaaccactctggaaatcattctggcggttcctc
agaaaattagacatagtactaccggaggttccagcaatacctctccttgg
tatatatccagaaggtgtcccaaccggtaagaaggacatgctctacaatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
cccctcaacagagaaatggatacagaaaatgtggtacatttacacaatgg
agtactactcagttattaaaaagaatgaatttatgaaattcctaggcaaa
tggatggacctggagggcatcatcctgagtgaggtaacacaattacaaat
gaactcacacaatatatactcactgataagtggatattagcccaaaactt
aggatacccaatatataagatacaatttgctaaatgcatgaaactcaaga
agaacgaagaccaacgtgtggacactgtgccccttcttagaattgggaac
agaacacccatcaaaggagctacagagacaaagtttggagctgtgatgaa
aggatggaccatctacagactgccatatttagggatccatcccataatca
gcttccaaacgctgacaccattgcatacactatcaagattttcttgaaag
gacccagatatagctgtctcttgtgagactatgccgggcctagcaaacac
agaagtggatgctcacagtcagctattggatggatcacagggccccaatg
gaggagctagagaagtacccaagagctaaaggtatctgcaaccctatagt
gacacatatgactaaccagtaccccgagctctgacctctagccgcatatg
tatcaaagatggcctagtcggcatcactggaaagaagcccatttgactga
actttat
gaattcattaagcttttgaaacaagagcaatcagcaacaagtcagacaaa
agaaaatgcaagggagctagtacatatcccataagatatatcactggcca
caggtaagtagggaacctggggagaaaagcatgttgtgtggggtggcatt
ttggggcatattttcatagagtgtcttctttccacaagataaaaatcagt
gaaaatagctgcaatacttcctggaatgctacagaagtaaacattgctga
cagttgtactagaaatgtgttgcatccccttcttattatccagaaagagc
actatgttgagcctgaagagagaagaatttcctttggatttcatgggggt
aacagaagaggaagtcaaggcaacttcagttatcaggtagagttcctagt
gctcctgcttctggagatgtcttcacagaggcacaaccagggattttctt
cagaacagacatttctaaaggcagggaagattgctgtaacacttccagga
aggcgacccaagtaaatagtagtggtaatattcccataaatgaaatggac
tcccttctgaaacaccttttactgggagcaccttttgctgaagatgaccc
taggaagatacctgggttcctctccaggccacaacaacctacctctcagc
ctgtccttatttgcccaaatcatgattcaaacgctacatgtgaacgtcat
caagggaggttctgtagagatctcaaaacatacaagtgtgatgaaagtcc
taggactttcaaatattcatgtacccattaatccccaccagagaacacac
agaagagcattagtctgtctcacttaccataaagtattcagttgagtctt
ctgacttcagacttcatgaggttatgcacaagccagaaaagtctatgaaa
atattgcagcacatgcaaaagtcctttagcaacaagaccaccatgaaagg
ctcatcagaggatcacacaggagtgaaaccctacaccagctttcttatgt
aaaacagcttctggccatcatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_38553773_38554246
seq2: B6Ng01-109K23.b_685_1154 (reverse)

seq1  ATAAAGTTTGTGTGTCTGATGGGCCTCTCTTTCCAGTGATGGCCGATTAG  50
      |||||||   |  |||  ||||||   ||||||||||||| ||||| |||
seq2  ATAAAGT---TCAGTCAAATGGGC--TTCTTTCCAGTGAT-GCCGACTAG  44

seq1  GCCATCTTTTGATACATATGTAGCTAGAGTCAAGAGCTCAGGGGTACTGG  100
      |||||| |||||||||||||  |||||||   ||||||| ||||||||||
seq2  GCCATC-TTTGATACATATGCGGCTAGAGGTCAGAGCTC-GGGGTACTGG  92

seq1  TTAGTTCATAATGTTGTTGCACCTACAGGGTTGCAGATCCCTTTAGCTCC  150
      |||| |||||    |||  || ||| |||||||||||| ||||||||| |
seq2  TTAG-TCATA----TGTGTCA-CTATAGGGTTGCAGATACCTTTAGCT-C  135

seq1  TTGGATACTTTCTCTAGCTCCTCCACTGGGGGCCCTGTGATCCATCCAAT  200
      |||| ||| |||||||||||||||| | ||||||||||||||||||||||
seq2  TTGGGTAC-TTCTCTAGCTCCTCCA-TTGGGGCCCTGTGATCCATCCAAT  183

seq1  AGCTGACTGTGAGCATCCACTTATGTGTTTGCTAGGCCCCTGCCTATTCT  250
      |||||||||||||||||||||| ||||||||||||| ||| || || |||
seq2  AGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGG-CCCGGCATAGTCT  232

seq1  CACAAGAGACAGCTATATCTGGATCCTTTCAGCAAAATCTTGCTAGTATA  300
      |||||||||||||||||||||| ||||||||  ||||||||| |||| ||
seq2  CACAAGAGACAGCTATATCTGGGTCCTTTCAAGAAAATCTTGATAGTGTA  282

seq1  TGCAGTGGTGTCAGCGTTTGGAAGCTGATTATGGGGTGGATCCCTAGATA  350
      |||| |||||||||||||||||||||||||||||| |||||||||| |||
seq2  TGCAATGGTGTCAGCGTTTGGAAGCTGATTATGGGATGGATCCCTAAATA  332

seq1  AGGCAGTCTCTAAATGGTCCATCCTTTTGTCGCAGCTCCAAACTTTGTCT  400
       |||||||| || ||||||||||||||  || ||||||||||||||||||
seq2  TGGCAGTCTGTAGATGGTCCATCCTTTCATCACAGCTCCAAACTTTGTCT  382

seq1  CTGTAACTCCTTCCATGGG--------------TTCTAAGAAGGGGCACA  436
      ||||| ||||||  |||||              |||||||||||||||||
seq2  CTGTAGCTCCTTTGATGGGTGTTCTGTTCCCAATTCTAAGAAGGGGCACA  432

seq1  GTGTCCACACTTTGGTCTTCATTCTTCTAGAGTTTCAT  474
      |||||||||| ||||||||| ||||||| |||||||||
seq2  GTGTCCACACGTTGGTCTTCGTTCTTCTTGAGTTTCAT  470

seq1: chr7_12304568_12305589
seq2: B6Ng01-109K23.g_68_1090

seq1  GAATTCATTAAGCTTTTGAAACAAGAGCAATCAGCAACAAGTCAGACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAGCTTTTGAAACAAGAGCAATCAGCAACAAGTCAGACAAA  50

seq1  AGAAAATGCAAGGGAGCTAGTACATATCCCATAAGATATATCACTGGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGCAAGGGAGCTAGTACATATCCCATAAGATATATCACTGGCCA  100

seq1  CAGGTAAGTAGGGAACCTGGGGAGAAAAGCATGTTGTGTGGGGTGGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAGTAGGGAACCTGGGGAGAAAAGCATGTTGTGTGGGGTGGCATT  150

seq1  TTGGGGCATATTTTCATAGAGTGTCTTCTTTCCACAAGATAAAAATCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCATATTTTCATAGAGTGTCTTCTTTCCACAAGATAAAAATCAGT  200

seq1  GAAAATAGCTGCAATACTTCCTGGAATGCTACAGAAGTAAACATTGCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGCTGCAATACTTCCTGGAATGCTACAGAAGTAAACATTGCTGA  250

seq1  CAGTTGTACTAGAAATGTGTTGCATCCCCTTCTTATTATCCAGAAAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTACTAGAAATGTGTTGCATCCCCTTCTTATTATCCAGAAAGAGC  300

seq1  ACTATGTTGAGCCTGAAGAGAGAAGAATTTCCTTTGGATTTCATGGGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTTGAGCCTGAAGAGAGAAGAATTTCCTTTGGATTTCATGGGGGT  350

seq1  AACAGAAGAGGAAGTCAAGGCAACTTCAGTTATCAGGTAGAGTTCCTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGAGGAAGTCAAGGCAACTTCAGTTATCAGGTAGAGTTCCTAGT  400

seq1  GCTCCTGCTTCTGGAGATGTCTTCACAGAGGCACAACCAGGGATTTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGCTTCTGGAGATGTCTTCACAGAGGCACAACCAGGGATTTTCTT  450

seq1  CAGAACAGACATTTCTAAAGGCAGGGAAGATTGCTGTAACACTTCCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGACATTTCTAAAGGCAGGGAAGATTGCTGTAACACTTCCAGGA  500

seq1  AGGCGACCCAAGTAAATAGTAGTGGTAATATTCCCATAAATGAAATGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGACCCAAGTAAATAGTAGTGGTAATATTCCCATAAATGAAATGGAC  550

seq1  TCCCTTCTGAAACACCTTTTACTGGGAGCACCTTTTGCTGAAGATGACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTGAAACACCTTTTACTGGGAGCACCTTTTGCTGAAGATGACCC  600

seq1  TAGGAAGATACCTGGGTTCCTCTCCAGGCCACAACAACCTACCTCTCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGATACCTGGGTTCCTCTCCAGGCCACAACAACCTACCTCTCAGC  650

seq1  CTGTCCTTATTTGCCCAAATCATGATTCAAACGCTACATGTGAACGTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTTATTTGCCCAAATCATGATTCAAACGCTACATGTGAACGTCAT  700

seq1  CAAGGGAGGTTCTGTAGAGATCTCAAAACATACAAGTGTGATGAAAGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAGGTTCTGTAGAGATCTCAAAACATACAAGTGTGATGAAAGTCC  750

seq1  TAGGACTTTCAAATATTCATGTACCCATTAATCCCCACCAGAGAACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTTTCAAATATTCATGTACCCATTAATCCCCACCAGAGAACACAC  800

seq1  AGAAGAGCATTAGTCTGTCTCACTTACCATAAAGTATTCAGTTGAGTC-T  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGAAGAGCATTAGTCTGTCTCACTTACCATAAAGTATTCAGTTGAGTCTT  850

seq1  CTGACTTCAGACTTCATGAGGTTATGCACAAGCCAGAGAAGTCTATGAAA  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTGACTTCAGACTTCATGAGGTTATGCACAAGCCAGAAAAGTCTATGAAA  900

seq1  ATA-TGCAGCACATGCAAAAGGTCCTTTAGCAACAAGACCAACATG-AAG  947
      ||| |||||||||||||||| |||||||||||||||||||| |||| |||
seq2  ATATTGCAGCACATGCAAAA-GTCCTTTAGCAACAAGACCACCATGAAAG  949

seq1  GCTCATCAGAGGATCCACACAGGAGTGAAACCTTACACCAG-TTTCCTAT  996
      |||||||||||||| ||||||||||||||||| |||||||| |||| |||
seq2  GCTCATCAGAGGAT-CACACAGGAGTGAAACCCTACACCAGCTTTCTTAT  998

seq1  GTAAACACAGCTTCTGCCAATCATCC  1022
      ||||| |||||||||| | |||||||
seq2  GTAAA-ACAGCTTCTGGCCATCATCC  1023