BAC Information

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BAC

Clone NameB6Ng01-111C03
Chromosome7 (Build37)
Map Location 91,320,684 - 91,485,157
singlet/doubletdoublet
Overlap geneArnt2
Upstream geneA530021J07Rik, EG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik, Mesdc1, Mesdc2, 9930013L23Rik, 2210412D01Rik
Downstream geneLOC100039239, Fah, Zfand6, 2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111C03.bB6Ng01-111C03.g
ACCDH917563DH917564
length1,0851,142
definitionDH917563|Mus musculus domesticus DNA, BAC clone: B6Ng01-111C03, 5' end.DH917564|Mus musculus domesticus DNA, BAC clone: B6Ng01-111C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,484,066 - 91,485,157)(91,320,684 - 91,321,838)
sequence
gaattctgtgaactatgcagtccacgctgtggtatcagttcaggaaaaag
atggtgtatttccaactgtcagtcacaaaggtaacttcatgaaaaccata
ttttcagacacatagtttattttctttggaataccccaacttagtctctg
gactgatgccagaatctgaaaccctaaacacactcagcagtccatttctt
accatattaggtaacacagaagaaaaaaataataattctggattttatct
caactattaacgctgttattaggtttcagttgttggaaagagaaacgaag
tgtcttaatggctagggaagcatgtttatttgaattaagccattgaaaac
tgcccagctgtgtagtaaacacccgatcttcagggaaagagcttgcagtt
gggctttcagaggtgcccaggaagtacatgcaagtggagagctgagcact
gcagcagttgctctgccttccacagagacactcccactggaaaccacagt
gccttccatcccagatgcttctttggagctggttcagttctttctcgtca
aatatttagacaacctgccttgttttgcttcatgaatacatggcatgctg
atgccccggaactgtttgtatttttctctcatattttattttgaaattga
tttcctgaatctggacagagctccagcctgagctgctgggctcattatca
tggtggtgtcacaatagacagtgtttctacacatgctgctgtctccagca
gcctgccttccttccctgctgccaaaagtcccctgaggtgacctagtgtg
actcaagcacgggaccaaatgggatgaggaggatgcaggcctggggacat
ggggaggcagttaggggaggtggaggatcctgcccttaatcatctggacc
tagtaacatttgcagcccatgatttttttaccttgagactcattaactca
gacgtctcacttcttcctctatagatactgataacacgtatttcctaaga
ctaatagagaacatttcaggagctaatctgtgagaaagccatcatgattc
tttagaaactaatatttcatccttttcagaataat
gaattcctttaagactaaggatgtaatggagttgaactactacatggcta
ccatgcacaaaaccctgggttctatcccctgaaccacacaaactggtcat
acatttgtaacctagcattcagaggttagaggcaggagagtcaaggtcac
ccatggtcacatagcaagtctgaagacaacttgaactatatgagaccctg
tttccaaaagaaaaaaaagggacagtgaggataagaataaaagaaaataa
atatcccctcttaacctttggtaggccaatcagtgactaagaatttgggt
tcaaaccctaactctgtagttataagctgggagaacctgggcatagggct
gccctgcctgctgtactgaggcctgtaaggatcagaaccaaaaacatgtg
cactggatcaagatcctggcattgagagatggattgccaaggtccactac
tgtcttctttttaaacttgtgaggtgcaggcacagaccatagcaggttta
tctgttttgagaaaatcctttgctcgtgtgctttgtgctttgtttgcaaa
tcatagttcctcctgtataatgactacagtggctagtaatgattccagaa
atgaacactttggagtaattactgtgcttgcagaggatatatcaattcag
gtacttcacggatgctgacttagtttgtttgcccaaccatctttagaaag
tatgcactatgattttcttcaattgtagataaagaaactgtcatagcaat
gtcaactgacttctcaggttataacaccagtaagtagaaaagtctagagt
cacctttgatctagccaccatcacactctactggttttctcaatgacttt
ttgccagctgaaagtgactagctatgagtgattttgtccaagactagtct
gaaaaagagaaggacaaagagttgcagacagttgccagagagcccgtggt
cccctctgtcctgcacagcttctttcgtcactggaaagtttatcgagtcc
ttgacccacttgacactgggcttgcctgtgctgtcttcttatggagccca
gcaggatagcactcactatttaactgagcccagttccattgcatcttcct
gactcccattttggagactgggatgacagactggttgccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_91484066_91485157
seq2: B6Ng01-111C03.b_46_1130 (reverse)

seq1  ATTATTCTGAAATGAATGAAATATTAGTTTCTAAATACAATCATGATGGC  50
      |||||||||||| | |||||||||||||||||||  | ||||||||||||
seq2  ATTATTCTGAAAAGGATGAAATATTAGTTTCTAA--AGAATCATGATGGC  48

seq1  TTTCTCACAGATTAGCT-CTGAAATGTTCTCTATTAGTTCTTAGGAAATA  99
      ||||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  TTTCTCACAGATTAGCTCCTGAAATGTTCTCTATTAG-TCTTAGGAAATA  97

seq1  CGTTGTTATCAGTATCTATAGAGGAAGAAGTGAGAACGTCTGAGTTAATG  149
      || ||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CG-TGTTATCAGTATCTATAGAGGAAGAAGTGAG-ACGTCTGAGTTAATG  145

seq1  AGTTCTCAAGGTAAAAAAAATCATGGGCTGCACATGTTACTAGGTCCAGA  199
      || ||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  AG-TCTCAAGGT-AAAAAAATCATGGGCTGCAAATGTTACTAGGTCCAGA  193

seq1  TGATTAAGGGCAGGATCCTCCACCTCCCCTAACTGCCTCCCCATGTCCCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAGGGCAGGATCCTCCACCTCCCCTAACTGCCTCCCCATGTCCCC  243

seq1  AGGCCTGCATCCTCCTCATCCCATTTGGTCCCGTGCTTGAGTCACACTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGCATCCTCCTCATCCCATTTGGTCCCGTGCTTGAGTCACACTAG  293

seq1  GTCACCTCAGGGGACTTTTGGCAGCAGGGAAGGAAGGCAGGCCTGCTGGA  349
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTCACCTCAGGGGACTTTTGGCAGCAGGGAAGGAAGGCAGG-CTGCTGGA  342

seq1  GACAGCAGCATGTGTAGAAACACTGTCTATTGTGACACCACCATGATAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGCATGTGTAGAAACACTGTCTATTGTGACACCACCATGATAAT  392

seq1  GAGCCCAGCAGCTCAGGCTGGAGCTCTGTCCAGATTCAGGAAATCAATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAGCAGCTCAGGCTGGAGCTCTGTCCAGATTCAGGAAATCAATTT  442

seq1  CAAAATAAAATATGAGAGAAAAATACAAACAGTTCCGGGGCATCAGCATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAAATATGAGAGAAAAATACAAACAGTTCCGGGGCATCAGCATG  492

seq1  CCATGTATTCATGAAGCAAAACAAGGCAGGTTGTCTAAATATTTGACGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTATTCATGAAGCAAAACAAGGCAGGTTGTCTAAATATTTGACGAG  542

seq1  AAAGAACTGAACCAGCTCCAAAGAAGCATCTGGGATGGAAGGCACTGTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTGAACCAGCTCCAAAGAAGCATCTGGGATGGAAGGCACTGTGG  592

seq1  TTTCCAGTGGGAGTGTCTCTGTGGAAGGCAGAGCAACTGCTGCAGTGCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGTGGGAGTGTCTCTGTGGAAGGCAGAGCAACTGCTGCAGTGCTC  642

seq1  AGCTCTCCACTTGCATGTACTTCCTGGGCACCTCTGAAAGCCCAACTGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCCACTTGCATGTACTTCCTGGGCACCTCTGAAAGCCCAACTGCA  692

seq1  AGCTCTTTCCCTGAAGATCGGGTGTTTACTACACAGCTGGGCAGTTTTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTCCCTGAAGATCGGGTGTTTACTACACAGCTGGGCAGTTTTCA  742

seq1  ATGGCTTAATTCAAATAAACATGCTTCCCTAGCCATTAAGACACTTCGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTAATTCAAATAAACATGCTTCCCTAGCCATTAAGACACTTCGTT  792

seq1  TCTCTTTCCAACAACTGAAACCTAATAACAGCGTTAATAGTTGAGATAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCCAACAACTGAAACCTAATAACAGCGTTAATAGTTGAGATAAA  842

seq1  ATCCAGAATTATTATTTTTTTCTTCTGTGTTACCTAATATGGTAAGAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAATTATTATTTTTTTCTTCTGTGTTACCTAATATGGTAAGAAAT  892

seq1  GGACTGCTGAGTGTGTTTAGGGTTTCAGATTCTGGCATCAGTCCAGAGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCTGAGTGTGTTTAGGGTTTCAGATTCTGGCATCAGTCCAGAGAC  942

seq1  TAAGTTGGGGTATTCCAAAGAAAATAAACTATGTGTCTGAAAATATGGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGGGGTATTCCAAAGAAAATAAACTATGTGTCTGAAAATATGGTT  992

seq1  TTCATGAAGTTACCTTTGTGACTGACAGTTGGAAATACACCATCTTTTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAAGTTACCTTTGTGACTGACAGTTGGAAATACACCATCTTTTTC  1042

seq1  CTGAACTGATACCACAGCGTGGACTGCATAGTTCACAGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTGATACCACAGCGTGGACTGCATAGTTCACAGAATTC  1085

seq1: chr7_91320684_91321838
seq2: B6Ng01-111C03.g_68_1209

seq1  GAATTCCTTTAAGACTAAGGATGTAATGGAGTTGAACTACTACATGGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAAGACTAAGGATGTAATGGAGTTGAACTACTACATGGCTA  50

seq1  CCATGCACAAAACCCTGGGTTCTATCCCCTGAACCACACAAACTGGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCACAAAACCCTGGGTTCTATCCCCTGAACCACACAAACTGGTCAT  100

seq1  ACATTTGTAACCTAGCATTCAGAGGTTAGAGGCAGGAGAGTCAAGGTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGTAACCTAGCATTCAGAGGTTAGAGGCAGGAGAGTCAAGGTCAC  150

seq1  CCATGGTCACATAGCAAGTCTGAAGACAACTTGAACTATATGAGACCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTCACATAGCAAGTCTGAAGACAACTTGAACTATATGAGACCCTG  200

seq1  TTTCCAAAAGAAAAAAAAGGGACAGTGAGGATAAGAATAAAAGAAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAAAGAAAAAAAAGGGACAGTGAGGATAAGAATAAAAGAAAATAA  250

seq1  ATATCCCCTCTTAACCTTTGGTAGGCCAATCAGTGACTAAGAATTTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCCTCTTAACCTTTGGTAGGCCAATCAGTGACTAAGAATTTGGGT  300

seq1  TCAAACCCTAACTCTGTAGTTATAAGCTGGGAGAACCTGGGCATAGGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCCTAACTCTGTAGTTATAAGCTGGGAGAACCTGGGCATAGGGCT  350

seq1  GCCCTGCCTGCTGTACTGAGGCCTGTAAGGATCAGAACCAAAAACATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCCTGCTGTACTGAGGCCTGTAAGGATCAGAACCAAAAACATGTG  400

seq1  CACTGGATCAAGATCCTGGCATTGAGAGATGGATTGCCAAGGTCCACTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGATCAAGATCCTGGCATTGAGAGATGGATTGCCAAGGTCCACTAC  450

seq1  TGTCTTCTTTTTAAACTTGTGAGGTGCAGGCACAGACCATAGCAGGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTTTTTAAACTTGTGAGGTGCAGGCACAGACCATAGCAGGTTTA  500

seq1  TCTGTTTTGAGAAAATCCTTTGCTCGTGTGCTTTGTGCTTTGTTTGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTGAGAAAATCCTTTGCTCGTGTGCTTTGTGCTTTGTTTGCAAA  550

seq1  TCATAGTTCCTCCTGTATAATGACTACAGTGGCTAGTAATGATTCCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTTCCTCCTGTATAATGACTACAGTGGCTAGTAATGATTCCAGAA  600

seq1  ATGAACACTTTGGAGTAATTACTGTGCTTGCAGAGGATATATCAATTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACACTTTGGAGTAATTACTGTGCTTGCAGAGGATATATCAATTCAG  650

seq1  GTACTTCACGGATGCTGACTTAGTTTGTTTGCCCAACCATCTTTAGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCACGGATGCTGACTTAGTTTGTTTGCCCAACCATCTTTAGAAAG  700

seq1  TATGCACTATGATTTTCTTCAATTGTAGATAAAGAAACTGTCATAGCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACTATGATTTTCTTCAATTGTAGATAAAGAAACTGTCATAGCAAT  750

seq1  GTCAACTGACTTCTCAGGTTATAACACCAGTAAGTAGAAAAGTCTAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTGACTTCTCAGGTTATAACACCAGTAAGTAGAAAAGTCTAGAGT  800

seq1  CACCTTTGATCTAGCCACCATCACACTCTACTGGTTTTCTCAATGACTAT  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CACCTTTGATCTAGCCACCATCACACTCTACTGGTTTTCTCAATGACTTT  850

seq1  TTGCCAGCTGAAAGTGACTAGCTATGAGTGA-TTTGTCCAAGACTAGTCT  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTGCCAGCTGAAAGTGACTAGCTATGAGTGATTTTGTCCAAGACTAGTCT  900

seq1  GAGAAAAGAGAAAGGACAAAGAGTTGCAGACAGTGGCCAGAGAGCCCGTG  949
      || ||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  GA-AAAAGAG-AAGGACAAAGAGTTGCAGACAGTTGCCAGAGAGCCCGTG  948

seq1  GTCCCCTCTGTCCCTGCACAGCTTCTTTCGTCACTGGAAAGTTTATTCGA  999
      ||||||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  GTCCCCTCTGT-CCTGCACAGCTTCTTTCGTCACTGGAAAGTTTA-TCGA  996

seq1  GTCCTTGACCCACTTGACACTGGGCTTGCCTGTGGCTGTCTTCCTATGGA  1049
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  GTCCTTGACCCACTTGACACTGGGCTTGCCTGT-GCTGTCTTCTTATGGA  1045

seq1  GCCCCAGGCAGGTATAGCACTCACTATTTAACTGAGCCCAGTTTCTCATT  1099
      ||||   ||||| |||||||||||||||||||||||||||||   ||  |
seq2  GCCC--AGCAGG-ATAGCACTCACTATTTAACTGAGCCCAGT---TCCAT  1089

seq1  TGCAATCTTCCTGACTCCCATTTCGTGAGTACTGGGATGACAGACATGTT  1149
      ||| ||||||||||||||||||| | ||| |||||||||||||||  |||
seq2  TGC-ATCTTCCTGACTCCCATTTTG-GAG-ACTGGGATGACAGACTGGTT  1136

seq1  GCCACC  1155
      ||||||
seq2  GCCACC  1142