BAC Information

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BAC

Clone NameB6Ng01-111C12
Chromosome5 (Build37)7 (Build37)
Map Location 18,084,517 - 18,084,5789,279,571 - 9,279,858
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111C12.bB6Ng01-111C12.g
ACCDH917579DH917580
length953289
definitionDH917579|Mus musculus domesticus DNA, BAC clone: B6Ng01-111C12, 5' end.DH917580|Mus musculus domesticus DNA, BAC clone: B6Ng01-111C12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,517 - 18,084,578)(9,279,571 - 9,279,858)
sequence
gaattcaagaagctatagtccagaaaaccaaataaccccatttaaaagtg
gagtacagacagagctaaacaaagaattctcaactgaagaaaaccaaatg
gatgaaaagcacgtaaaaaaatgttcaacatccttaatcaccagggaaat
gcaaatcaaaataaccctgagattccacctcacaccagtcagaatggcta
agatcaaaaattcaggtgacaccagatgctggcgaggatgtggtaaaaga
ggaacactcttccattgctggtgggattgagagctgatacaaccactctg
gaaatcagtctggtagttcctcagaaaattcgcagacatagtgctatcag
aggatccatcaatacctcccctgggcatttacccagaagactttccaact
tgtaataaggaaacatgctccactatgttcatagcagccttatttataat
agcattggatttaggattggtaaagatctttacccaatcttttttttttt
ttgctgttttgtcttactgacatactttgcctaacacatgctttgcaatt
ttatgagattaattctcaatcttatagcacaaaccatttctgttgttcag
gattttccccctgtgcaaatatctttgagactcttctctactttctcctc
tataaggtcattgtctctgatttcatgtgtagttccttgatccacttaga
cttgatttttgtacaaagagataaaaatggattaattcacattcttctac
atgacaactgccagttgtaccagtgccatttgttcaaaatgatgtcttat
tttcactggatgattgtagctcctttgttaaagattaagtgaccatagat
gtgtgagttcatttctgtgccttcaattctattccactgatctatctgtc
tgtcgctgtaccagtacatgcagtttttcatcacatttgctctgtagtac
agc
aaactcttctcagttatacacatcagatatgacgtcatcaccaataactt
ttctattgtgcatccccacactaaaagaaatttggagatgcataacagaa
ttcagcccacaaaatcatttcggagtggcactgaggatgtacttcagaag
gaaagtctccagcagcagcttccagaggggtggggtggggggaagggaac
actgagcatatttaaatggatctagtctgtagggagtccgcttaactcct
tacacattggttctccactgtccatctctgcaactgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084517_18084578
seq2: B6Ng01-111C12.b_438_499 (reverse)

seq1  GCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  GCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTTTCCTTATT  50

seq1  ACCAGTTGGAAA  62
      || |||||||||
seq2  ACAAGTTGGAAA  62

seq1: chr7_9279571_9279858
seq2: B6Ng01-111C12.g_75_362 (reverse)

seq1  GACAGTTGCAGAGATGGACAGTGGAGAACCAATGTGTAAGGAGTTAAGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTGCAGAGATGGACAGTGGAGAACCAATGTGTAAGGAGTTAAGCG  50

seq1  GACTCCCTACAGACTAGATCCATTTACATATGCTCAGTGTTCCCTTCCCC  100
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GACTCCCTACAGACTAGATCCATTTAAATATGCTCAGTGTTCCCTTCCCC  100

seq1  CCACCCCACCCCTCTGGAAGCTGCTGCTGGAGACTTTCCTTCTGAAGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCACCCCTCTGGAAGCTGCTGCTGGAGACTTTCCTTCTGAAGTAC  150

seq1  ATCCTCAGTGCCACTCCGAAATGATTTTGTGGGCTGAATTCTGTTATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAGTGCCACTCCGAAATGATTTTGTGGGCTGAATTCTGTTATGCA  200

seq1  TCTCCAAATTTCTTTTAGTGTGGGGATGCACAATAGAAAAGTTATTGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAATTTCTTTTAGTGTGGGGATGCACAATAGAAAAGTTATTGGTG  250

seq1  ATGACGTCATATCTGATGTGTATAACTGAGAAGAGTTT  288
      ||||||||||||||||||||||||||||||||||||||
seq2  ATGACGTCATATCTGATGTGTATAACTGAGAAGAGTTT  288