BAC Information

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BAC

Clone NameB6Ng01-112N09
Chromosome7 (Build37)
Map Location 8,140,632 - 8,141,748
singlet/doubletsinglet
Overlap geneLOC100042681
Upstream geneBC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949
Downstream geneLOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998, LOC100042009, LOC100042754, V2r14, EG628128, EG434109, LOC434110, EG628145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112N09.bB6Ng01-112N09.g
ACCDH918793DH918794
length1,1581,092
definitionDH918793|Mus musculus domesticus DNA, BAC clone: B6Ng01-112N09, 5' end.DH918794|Mus musculus domesticus DNA, BAC clone: B6Ng01-112N09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccatttttaattttattttctggagt
ccacactattgatatatatatatcggatattagtcccctatctgatttag
gataggtaaagatcctttcccaatctgttggtggcctttatatcttattg
acagtgtcttttgccttgcagaagcttcgaagtttcatgaggtcacattg
gtcaatctccatcttacagcacaagccattgctgttctattcaggaattt
ttcccctgtgcccatgtcttcgaggcttttccccactttctccagtaaaa
gtttcagtgtctctggttttatgtgaagttccttgatccacttagatttg
accttagtacaaggagataagaatggaacaatttgcattcttctacatga
taacaaccagttgtgcctacaccatttgttgaaaatgctgtctttcttcc
actggatgtttttagctcccttgctgaatatcaagtgaccatcggtgtgt
gggttcatttctgggtcttcaattctattccattggtctacttgtttgtc
tctataccagtaccatgcagtttttttcacaattgctctgtagtaaagct
ttaggtcaggcatggtgattctaccagaggtacttttagccttgagaaga
gtttttgctatcctaggttttttgttactccagatgaatttgcagattgc
tctttctaattcgttgaagaattgagttggaattttgatggggattgcat
tgaatctatagattgcttttggcaagagagccatttttaaaatgttgatc
ctgcacatccatgagcatgggagatctttcctttttctgagatcttcttt
aatttctttcttcagagactagaagtttttatcatacagatctttaactt
ccttagttaggatcacgcccagatatttatattatttgtgactattgaga
aggtgttgtttccctaattcttctcagctgtttattctttgtgtagagga
aggccatgacttgtttggagtaaattttataatccagctacttcaccaaa
gctgtttatcaggtttaggagtctcttgtgggattttagtggccttaata
taaactcattcactgcaaaagggaaatttgactcttcccttccaatgtac
tggcgatt
gaattccaggtcagccaggactatacaatgaaaccctgtctcaaaaaaaa
aaaaaaaatcaaaacaaaacaaaaacccaaaacaaaaaccaaaaaacaaa
acaaaacgcatcaatgttttttaagagccaaacgataatcagtttatatg
ttcttatagatatgttagtttatattattatattcagactattgtcatgc
ttattgaaaattgttagcctaattttacatcatgaatagagctataaaat
actaatttttatacctttcttatttaaacatgaatcttaatgtgttcatt
tgctgacaattaacatagaagtttgtaacaaaactcaagatcaccattct
ttagagcaccactctactataatgtgaccttgaagggaaaaagtccaata
gggaagtaaaacttaagcataaagcaccacttaagacgacctgataaaaa
ctttgcgatgcttcgggtagagaaagctcagaataagagctcagaatgtc
tggagaaagaatgatgtcaaaagataattccccattcctacattgcctgg
cgtaggtcatgcaatgaagttttaaatgtgcaaaataaagaaagagttag
gatatacaacttgaaaattaaccctgataataaaactaggtttctttttg
cctttagccttctttaaaaagtataccagttgaatgttagaaatataatt
gcattttttttttataaaagtcctactatatatcaggcacaaaggtaaaa
ataataaatttctctatatataaacttgctatttacttactgtttctcca
tataagatattaaagtatactctgataaatgatgcttatatgtccatgca
gtgtgacacatggacacatattaggggtatctaactctcatttatggtca
agtagtacttcctaaatatgtataagaagcacaactccaaaaataattat
tttctgagtgatgataggagttgacaaaatccaaagtagggaagatgagc
atcaggagtatcagcagttttgagatatactctatatatagcaaacaaac
ggagatgttcatcagagctcaaaattctgtctacaatagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_8140632_8141748
seq2: B6Ng01-112N09.g_67_1158

seq1  GAATTCCAGGTCAGCCAGGACTATACAATGAAACCCTGTCTCAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCAGCCAGGACTATACAATGAAACCCTGTCTCAAAAAAAA  50

seq1  AAAAAAAATCAAAACAAAACAAAAACCCAAAACAAAAACCAAAAAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATCAAAACAAAACAAAAACCCAAAACAAAAACCAAAAAACAAA  100

seq1  ACAAAACGCATCAATGTTTTTTAAGAGCCAAACGATAATCAGTTTATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACGCATCAATGTTTTTTAAGAGCCAAACGATAATCAGTTTATATG  150

seq1  TTCTTATAGATATGTTAGTTTATATTATTATATTCAGACTATTGTCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATAGATATGTTAGTTTATATTATTATATTCAGACTATTGTCATGC  200

seq1  TTATTGAAAATTGTTAGCCTAATTTTACATCATGAATAGAGCTATAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAAAATTGTTAGCCTAATTTTACATCATGAATAGAGCTATAAAAT  250

seq1  ACTAATTTTTATACCTTTCTTATTTAAACATGAATCTTAATGTGTTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTTTTATACCTTTCTTATTTAAACATGAATCTTAATGTGTTCATT  300

seq1  TGCTGACAATTAACATAGAAGTTTGTAACAAAACTCAAGATCACCATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACAATTAACATAGAAGTTTGTAACAAAACTCAAGATCACCATTCT  350

seq1  TTAGAGCACCACTCTACTATAATGTGACCTTGAAGGGAAAAAGTCCAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCACCACTCTACTATAATGTGACCTTGAAGGGAAAAAGTCCAATA  400

seq1  GGGAAGTAAAACTTAAGCATAAAGCACCACTTAAGACGACCTGATAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTAAAACTTAAGCATAAAGCACCACTTAAGACGACCTGATAAAAA  450

seq1  CTTTGCGATGCTTCGGGTAGAGAAAGCTCAGAATAAGAGCTCAGAATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCGATGCTTCGGGTAGAGAAAGCTCAGAATAAGAGCTCAGAATGTC  500

seq1  TGGAGAAAGAATGATGTCAAAAGATAATTCCCCATTCCTACATTGCCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAGAATGATGTCAAAAGATAATTCCCCATTCCTACATTGCCTGG  550

seq1  CGTAGGTCATGCAATGAAGTTTTAAATGTGCAAAATAAAGAAAGAGTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGGTCATGCAATGAAGTTTTAAATGTGCAAAATAAAGAAAGAGTTAG  600

seq1  GATATACAACTTGAAAATTAACCCTGATAATAAAACTAGGTTTCTTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACAACTTGAAAATTAACCCTGATAATAAAACTAGGTTTCTTTTTG  650

seq1  CCTTTAGCCTTCTTTAAAAAGTATACCAGTTGAATGTTAGAAATATAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGCCTTCTTTAAAAAGTATACCAGTTGAATGTTAGAAATATAATT  700

seq1  GCATTTTTTTTTTATAAAAGTCCTACTATATATCAGGCACAAAGGTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTTTTTTATAAAAGTCCTACTATATATCAGGCACAAAGGTAAAA  750

seq1  ATAATAAATTTCTCTATATATAAACTTGCTATTTACTTACTGTTTCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAATTTCTCTATATATAAACTTGCTATTTACTTACTGTTTCTCCA  800

seq1  TATAAGATATTAAAGTATACTCTGATAAATGATGCTTATATGTCCATGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGATATTAAAGTATACTCTGATAAATGATGCTTATATGTCCATGCA  850

seq1  GTGTGACACATGGACACATATTAGGGGTATCTAACTCTCATTTATGGTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACACATGGACACATATTAGGGGTATCTAACTCTCATTTATGGTCA  900

seq1  AGTAGTACTTCCTAAATATGTTATAAGAAGCACAACTCCAAAAATAATTA  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGTAGTACTTCCTAAATATG-TATAAGAAGCACAACTCCAAAAATAATTA  949

seq1  TTTTCTGAGTGAATGATAGGAAGTTGACAAAAATCCAAAGTAGGGAAAGA  1000
      ||||||||||| |||||||| ||||||| ||||||||||||||||||   
seq2  TTTTCTGAGTG-ATGATAGG-AGTTGAC-AAAATCCAAAGTAGGGAA--G  994

seq1  ATGAGCAATCCAGGAGTATCAGCAGTTTTTGAGGAATATTAACTCTAATA  1050
      |||||||   ||||||||||||||| |||||||  ||||  ||||| |||
seq2  ATGAGCA--TCAGGAGTATCAGCAG-TTTTGAG--ATAT--ACTCT-ATA  1036

seq1  TATTAGCAAACAAAACGGAGAATTGGTCTCATCCCAGAAACCTCAAAAAT  1100
      || |||||||| |||||||||  |    |||||    | | ||| |||||
seq2  TA-TAGCAAAC-AAACGGAGATGT----TCATC----AGAGCTC-AAAAT  1075

seq1  CCTGTCTACAATAGATG  1117
       ||||||||||||||||
seq2  TCTGTCTACAATAGATG  1092