BAC Information

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BAC

Clone NameB6Ng01-113G18
Chromosome7 (Build37)6 (Build37)
Map Location 105,195,415 - 105,196,56782,164,834 - 82,165,051
singlet/doubletsingletsinglet
Overlap geneGdpd4
Upstream geneNars2, Gab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1
Downstream geneMyo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir, Wnt11, LOC666978, Uvrag, EG666529
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113G18.bB6Ng01-113G18.g
ACCDH919222DH919223
length1,143859
definitionDH919222|Mus musculus domesticus DNA, BAC clone: B6Ng01-113G18, 5' end.DH919223|Mus musculus domesticus DNA, BAC clone: B6Ng01-113G18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(105,195,415 - 105,196,567)(82,164,834 - 82,165,051)
sequence
gaattcagatccaccttcaggtagaaaatcaactttaaaagtaggtaaag
tacaatgaaaaaaatttattacagttatttgagagttaaaaaaaatatag
tgaggaattatgggacccaaataaagaatgtaataactcaaggaaggaag
gttatcccaactgtatgtttcctgaaaaacactcattttagatattaaaa
acataaatagtggtaaatgtttttaaaaggtaggtcatacccaacactag
agaaaagtcagggtttctattaatattataccaaatagagttaagaatca
tactattatccaaaataataaaggttttactattgacttaattaacattc
atagtatactctatccaattacagaacgtgctatttacatatacacatgg
ggaaattacaaagatgggctatattataggtataaaatagtcaccgtaaa
tacaaagggactgataatcattccaattatagtctctggaaataggaatt
taaagtagaaaacaatagcaatattgatggagaagttggagctgtgggtc
tagctcaggaatagaacgtaagcttagcaagtaaaacaaacagacagaca
aacaaacaaacaaacaaacaaaccctgagctccactcccagcctccacta
agaattcccccaaagacatctggaaaatcccctaatatttggaacaaaca
agttcagtttctcagttatcaaaatagtatagggtatacagtagcaattc
aatacatgtatgtagtatgtaatgatcagatcatagtaactaccatatct
agttcctcagtataattcatttttgcatatattttatttatttgacaatt
tcattcatgtatacaaagtatcttaatcatattcaacccaaattctctct
gtgactcctgtcagaccctctgcaatacttgtttctctcttatgtcctat
taaaaaaagaacccattgagtccatttggtcttgcctgtgtgtgcaaggt
gtgggccattcttagagcatgggcaccctcctctgagatcacacctctgt
tcccagcagcatcattgtcaccaccttcctcagcttggaggagagcacct
tagtccctcctctgtggtttcattgttactgaccacttgatct
gaattcatcctctattttcttaggggatatgggcctgtttagagaattta
attgcttttgatttaactttggtaggtgttatctgtcctgaaaatcatcc
atttcatctagatttttccagttttgttgagtataggcttttgtagtagg
atctgatgagtttttaaaaaatttcctgagtttctgttgttatgtctccc
ttttcatttctgattttgttaatttaaaaactgcctcttgtaccctttag
tttggctaagggtttatctatcttgttgattctctgaaagaaccaacctt
ttatttattttttttatttctttgtttatatttggttgattttgaccctg
ggtttgactatttcctgccttctagtcttcttgggtgtgcttgcttcttt
ttgttctagggctttcaggtatgccgttaagttgctattgtatgtctctc
caatttctttatgagagcacttagtgctatgacttttcctcttagcactg
ctttcattgtgacctgtaagtttggatatgttgtgtcatcattttcattg
aattccaggaagtctttactttctttctttattgcttccctgatcaagtt
atcattgattagagagttcttcagttatcatcggtatgtaggctttctgt
tgtttttgttgttattgaagaccagccttaggccatggtgatctgatcaa
atgcatagaaattatttcaatcttcttgtattggttcaggtttgttttgt
gaccaattatacggtcaattttggagaaggtaccatgaggtgctgagaag
aaggtttatgcttttgttttagggtgaaatgttctgtagatatctgttaa
atccatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_105195415_105196567
seq2: B6Ng01-113G18.b_48_1190 (reverse)

seq1  AGATCAAGGTGGTCAGTAAACATTCCAACACACAGAGGAGGGACTTAGGT  50
      ||||||| ||||||||| |||| |  ||| ||||||||||||||| ||||
seq2  AGATCAA-GTGGTCAGT-AACAATGAAAC-CACAGAGGAGGGACTAAGGT  47

seq1  GGCTCTCCTCACAGCTGAGG-AGGTGGTGACAATTGATGGCTGCTGGGGA  99
       |||||||||  |||||||| |||||||||||| |||| ||||||||| |
seq2  -GCTCTCCTCCAAGCTGAGGAAGGTGGTGACAA-TGAT-GCTGCTGGGAA  94

seq1  CAGAGGTGTGATCTCAGA-GAGGGTGCCCATGCTCTATAGAATGGCCCCA  148
      |||||||||||||||||| |||||||||||||||||| ||||||| ||||
seq2  CAGAGGTGTGATCTCAGAGGAGGGTGCCCATGCTCTA-AGAATGG-CCCA  142

seq1  CACCCTTGCACACACAGGCAAGACCAAATGGACTCAATGGGTTCTTTTTT  198
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CA-CCTTGCACACACAGGCAAGACCAAATGGACTCAATGGGTTC-TTTTT  190

seq1  TTAATAGGACATTAAGAGAGAAACAAGTATTGCAGAGGGTCTGACAGGAG  248
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGGACA-TAAGAGAGAAACAAGTATTGCAGAGGGTCTGACAGGAG  239

seq1  TCACAGAGAGAATTTGGGTTGAATATGATTAAGATACTTTGTATACATGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGAGAATTTGGGTTGAATATGATTAAGATACTTTGTATACATGA  289

seq1  ATGAAATTGTCAAATAAATAAAATATATGCAAAAATGAATTATACCTGAG  348
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATGAAATTGTCAAATAAATAAAATATATGCAAAAATGAATTATA-CTGAG  338

seq1  GAACTAGATATGGTAGTTACTATGATCTGATCATTACATACTACATACAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGATATGGTAGTTACTATGATCTGATCATTACATACTACATACAT  388

seq1  GTATTGAATTGCTACTGTATACCCTATACTATTTTGATAACTGAGAAACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGAATTGCTACTGTATACCCTATACTATTTTGATAACTGAGAAACT  438

seq1  GAACTTGTTTGTTCCAAATATTAGGGGATTTTCCAGATGTCTTTGGGGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGTTTGTTCCAAATATTAGGGGATTTTCCAGATGTCTTTGGGGGA  488

seq1  ATTCTTAGTGGAGGCTGGGAGTGGAGCTCAGGGTTTGTTTGTTTGTTTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAGTGGAGGCTGGGAGTGGAGCTCAGGGTTTGTTTGTTTGTTTGT  538

seq1  TTGTTTGTCTGTCTGTTTGTTTTACTTGCTAAGCTTACGTTCTATTCCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTCTGTCTGTTTGTTTTACTTGCTAAGCTTACGTTCTATTCCTG  588

seq1  AGCTAGACCCACAGCTCCAACTTCTCCATCAATATTGCTATTGTTTTCTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGACCCACAGCTCCAACTTCTCCATCAATATTGCTATTGTTTTCTA  638

seq1  CTTTAAATTCCTATTTCCAGAGACTATAATTGGAATGATTATCAGTCCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATTCCTATTTCCAGAGACTATAATTGGAATGATTATCAGTCCCT  688

seq1  TTGTATTTACGGTGACTATTTTATACCTATAATATAGCCCATCTTTGTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTACGGTGACTATTTTATACCTATAATATAGCCCATCTTTGTAA  738

seq1  TTTCCCCATGTGTATATGTAAATAGCACGTTCTGTAATTGGATAGAGTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCATGTGTATATGTAAATAGCACGTTCTGTAATTGGATAGAGTAT  788

seq1  ACTATGAATGTTAATTAAGTCAATAGTAAAACCTTTATTATTTTGGATAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGAATGTTAATTAAGTCAATAGTAAAACCTTTATTATTTTGGATAA  838

seq1  TAGTATGATTCTTAACTCTATTTGGTATAATATTAATAGAAACCCTGACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGATTCTTAACTCTATTTGGTATAATATTAATAGAAACCCTGACT  888

seq1  TTTCTCTAGTGTTGGGTATGACCTACCTTTTAAAAACATTTACCACTATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTAGTGTTGGGTATGACCTACCTTTTAAAAACATTTACCACTATT  938

seq1  TATGTTTTTAATATCTAAAATGAGTGTTTTTCAGGAAACATACAGTTGGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTTAATATCTAAAATGAGTGTTTTTCAGGAAACATACAGTTGGG  988

seq1  ATAACCTTCCTTCCTTGAGTTATTACATTCTTTATTTGGGTCCCATAATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTTCCTTCCTTGAGTTATTACATTCTTTATTTGGGTCCCATAATT  1038

seq1  CCTCACTATATTTTTTTTAACTCTCAAATAACTGTAATAAATTTTTTTCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTATATTTTTTTTAACTCTCAAATAACTGTAATAAATTTTTTTCA  1088

seq1  TTGTACTTTACCTACTTTTAAAGTTGATTTTCTACCTGAAGGTGGATCTG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTTTACCTACTTTTAAAGTTGATTTTCTACCTGAAGGTGGATCTG  1138

seq1  AATTC  1153
      |||||
seq2  AATTC  1143

seq1: chr6_82164834_82165051
seq2: B6Ng01-113G18.g_707_925 (reverse)

seq1  CAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACACAAGG  50
      ||||||||| | ||||||||||||||||||||| | ||||||||| ||| 
seq2  CAAATGGATTTAACAGATATCTACAGAACATTTCACCCTAAAACAAAAGC  50

seq1  ATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACA  100
      ||| |||||||||||||||||||||||||||||||||||||||||||  |
seq2  ATAAACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCGTA  100

seq1  TAATAGGTCACAAAACAGGCTTCAACAGATTCAAAAATATTGAAAT-TGT  149
      |||| ||||||||||||  | | |||  || ||| || ||||||||   |
seq2  TAATTGGTCACAAAACAAACCTGAACCAATACAAGAAGATTGAAATAATT  150

seq1  CCCATGTATCCTATAAGATCACCATGCACTAAGGCTGATCTTCAATAACA  199
       | ||| ||   || |||||||||||  ||||||||| ||||||||||||
seq2  TCTATGCATTTGATCAGATCACCATGGCCTAAGGCTGGTCTTCAATAACA  200

seq1  AAAAAAATAACAGAAAGCC  218
      | ||||| |||||||||||
seq2  ACAAAAACAACAGAAAGCC  219