BAC Information

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BAC

Clone NameB6Ng01-114H16
Chromosome7 (Build37)
Map Location 107,042,700 - 107,194,659
singlet/doubletdoublet
Overlap geneXrra1, EG330602, Chrdl2
Upstream geneUvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2
Downstream genePold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114H16.bB6Ng01-114H16.g
ACCDH919989DH919990
length1,137367
definitionDH919989|Mus musculus domesticus DNA, BAC clone: B6Ng01-114H16, 5' end.DH919990|Mus musculus domesticus DNA, BAC clone: B6Ng01-114H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,042,700 - 107,043,854)(107,194,287 - 107,194,659)
sequence
gaattcattttggctcacgcttttcaaggcttgacccatggtcactgtct
ccctagttcctggctgtggccaggcagactatctgacggagggtgcctta
gggcacatgtagtggttagaacacacagacagaacatggaatgggaacta
gggacaaaggagaccctgttcttagcagtgacctaatgtttttgcaacaa
ggtttcatgtcctggagtttctgtgactacaccataaagccatcggctgg
caccaagcatttagcacatgatccttggtgggcattttaggcccaagtag
aaacttgttgccctgtatataagaactgcagagtccactcgctcctgtct
gcaccaggatgacagctgaaatcattgtgctctgagaactgcaaggctct
tggcataaagtataagaaatggccttttactgtatgacagagatgctccg
caccagaagtcagggccaagcccagcaggcgcaggcatcaggcttcatga
gctagagctccaggctgcttatgctcagccctggcttctgctaagaagaa
gcatgcgtttctgtggctgaatccagccactagtgtgtgtgcgtgctcag
cttctaagacatttacctaccctattcttaaaaatagtaatccatttcca
ggcagggggcaatgcacatgacatttctcgcatgaagagctggaaacctc
agcttctccgcctctggtaaactgccactttaaagagttcatctgctgag
actgtggagaaagctctacagtagagacatagctgcagtgggcttctgct
aggtcccatgccacacacgcacacacacatgcacacacacacattcacgt
accctgctttctttataactatgggttctttagattgctttaatatgggg
agtgtgcccgccctggcatgtgtggcggtccacctgtgcaagttgggtct
ctcctcatattgtgggttccaggatggaaaacaagttgtcaggatgcaac
agagctttgctgctgagcatcttgctagtccctgtcccctttcaacacta
ttttatggacaggaaaaacaaaacaaacaaaacaactttgctatgtttca
ctagggcagactttagaatgggaggtaggaatactgt
accttgatgtgaaaagagagtgactagtacccatgtcatcaccctggcct
ttatctgagtctgtggctaatgacccagagctgttgagaatgacccaccc
cccaatagctggagatccttgagggaggtcacatgtccttatatcttctg
gtctactcaagaacatttaacaggcagaaaagattgcagccagcttctct
cgccacactaggggagagcatacgtgtctggcttgatggattactggagc
gagctggattgatgctatctaatgaagaactatcagaggggaacagagga
actacttacacatctagggaacaatccctacccaaagcaaggattgtagg
gtgtgtgtgtgtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_107042700_107043854
seq2: B6Ng01-114H16.b_44_1180

seq1  GAATTCATTTTGGCTCACGCTTTTCAAGGCTTGACCCATGGTCACTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGGCTCACGCTTTTCAAGGCTTGACCCATGGTCACTGTCT  50

seq1  CCCTAGTTCCTGGCTGTGGCCAGGCAGACTATCTGACGGAGGGTGCCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGTTCCTGGCTGTGGCCAGGCAGACTATCTGACGGAGGGTGCCTTA  100

seq1  GGGCACATGTAGTGGTTAGAACACACAGACAGAACATGGAATGGGAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACATGTAGTGGTTAGAACACACAGACAGAACATGGAATGGGAACTA  150

seq1  GGGACAAAGGAGACCCTGTTCTTAGCAGTGACCTAATGTTTTTGCAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAAAGGAGACCCTGTTCTTAGCAGTGACCTAATGTTTTTGCAACAA  200

seq1  GGTTTCATGTCCTGGAGTTTCTGTGACTACACCATAAAGCCATCGGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCATGTCCTGGAGTTTCTGTGACTACACCATAAAGCCATCGGCTGG  250

seq1  CACCAAGCATTTAGCACATGATCCTTGGTGGGCATTTTAGGCCCAAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGCATTTAGCACATGATCCTTGGTGGGCATTTTAGGCCCAAGTAG  300

seq1  AAACTTGTTGCCCTGTATATAAGAACTGCAGAGTCCACTCGCTCCTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGTTGCCCTGTATATAAGAACTGCAGAGTCCACTCGCTCCTGTCT  350

seq1  GCACCAGGATGACAGCTGAAATCATTGTGCTCTGAGAACTGCAAGGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGGATGACAGCTGAAATCATTGTGCTCTGAGAACTGCAAGGCTCT  400

seq1  TGGCATAAAGTATAAGAAATGGCCTTTTACTGTATGACAGAGATGCTCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATAAAGTATAAGAAATGGCCTTTTACTGTATGACAGAGATGCTCCG  450

seq1  CACCAGAAGTCAGGGCCAAGCCCAGCAGGCGCAGGCATCAGGCTTCATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAAGTCAGGGCCAAGCCCAGCAGGCGCAGGCATCAGGCTTCATGA  500

seq1  GCTAGAGCTCCAGGCTGCTTATGCTCAGCCCTGGCTTCTGCTAAGAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGCTCCAGGCTGCTTATGCTCAGCCCTGGCTTCTGCTAAGAAGAA  550

seq1  GCATGCGTTTCTGTGGCTGAATCCAGCCACTAGTGTGTGTGCGTGCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCGTTTCTGTGGCTGAATCCAGCCACTAGTGTGTGTGCGTGCTCAG  600

seq1  CTTCTAAGACATTTACCTACCCTATTCTTAAAAATAGTAATCCATTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAGACATTTACCTACCCTATTCTTAAAAATAGTAATCCATTTCCA  650

seq1  GGCAGGGGGCAATGCACATGACATTTCTCGCATGAAGAGCTGGAAACCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGGGCAATGCACATGACATTTCTCGCATGAAGAGCTGGAAACCTC  700

seq1  AGCTTCTCCGCCTCTGGTAAACTGCCACTTTAAAGAGTTCATCTGCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTCCGCCTCTGGTAAACTGCCACTTTAAAGAGTTCATCTGCTGAG  750

seq1  ACTGTGGAGAAAGCTCTACAGTAGAGACATAGCTGCAGTGGGCTTCTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGAGAAAGCTCTACAGTAGAGACATAGCTGCAGTGGGCTTCTGCT  800

seq1  AGGTCCCATGCCACACACGCACACACACATGCACACACACACATTCACGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCATGCCACACACGCACACACACATGCACACACACACATTCACGT  850

seq1  ACCCTGCTTTCTTTATAACTATGGGTTCTTTAGATTGCTTTATTAT-GGG  899
      |||||||||||||||||||||||||||||||||||||||||| ||| |||
seq2  ACCCTGCTTTCTTTATAACTATGGGTTCTTTAGATTGCTTTAATATGGGG  900

seq1  AGTGTGCCCGCCCTGGCATGTGTGGCGGTCCAACTTGTGCAAGTTGGTTC  949
      ||||||||||||||||||||||||||||||| || |||||||||||| ||
seq2  AGTGTGCCCGCCCTGGCATGTGTGGCGGTCC-ACCTGTGCAAGTTGGGTC  949

seq1  TCTCCTCATATTTGTGGGTTCCAGGATTGAAAAACAGGTTGTCAGGATTG  999
      |||||||||| ||||||||||||||| || |||||| |||||||||||  
seq2  TCTCCTCATA-TTGTGGGTTCCAGGA-TGGAAAACAAGTTGTCAGGAT--  995

seq1  GCAACAGGAGCCTTTGCCTGCTGAGCCATCTTGCTAGTCCCTGTCCCCCT  1049
      |||||| ||| ||||| |||||||| |||||||||||||||||| |||||
seq2  GCAACA-GAG-CTTTG-CTGCTGAG-CATCTTGCTAGTCCCTGT-CCCCT  1040

seq1  TTCAACACCTATTTTATGGACAGGAAAAAACAAAACAAAAACAAAAACAA  1099
      ||||||| |||||||||||||||| ||||||||||||||    |||||||
seq2  TTCAACA-CTATTTTATGGACAGG-AAAAACAAAACAAA---CAAAACAA  1085

seq1  CCTTTTGCTATGTTTTCACTAGGGCAGACTTTAAGAATGTGAGGTAGGAT  1149
      |  ||||||||| ||||||||||||||||||| |||||| ||||||||| 
seq2  C--TTTGCTATG-TTTCACTAGGGCAGACTTT-AGAATGGGAGGTAGGAA  1131

seq1  TACTGT  1155
      ||||||
seq2  TACTGT  1137

seq1: chr7_107194287_107194659
seq2: B6Ng01-114H16.g_69_441 (reverse)

seq1  CCCCCACACACACACACCCTACAATCCTTGCTTTGGGTAGGGATTGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACACACACACACCCTACAATCCTTGCTTTGGGTAGGGATTGTTCC  50

seq1  CTAGATGTGTAAGTAGTTCCTCTGTTCCCCTCTGATAGTTCTTCATTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGTGTAAGTAGTTCCTCTGTTCCCCTCTGATAGTTCTTCATTAGA  100

seq1  TAGCATCAATCCAGCTCGCTCCAGTAATCCATCAAGCCAGACACGTATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCAATCCAGCTCGCTCCAGTAATCCATCAAGCCAGACACGTATGC  150

seq1  TCTCCCCTAGTGTGGCGAGAGAAGCTGGCTGCAATCTTTTCTGCCTGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTAGTGTGGCGAGAGAAGCTGGCTGCAATCTTTTCTGCCTGTTA  200

seq1  AATGTTCTTGAGTAGACCAGAAGATATAAGGACATGTGACCTCCCTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTTGAGTAGACCAGAAGATATAAGGACATGTGACCTCCCTCAAG  250

seq1  GATCTCCAGCTATTGGGGGGTGGGTCATTCTCAACAGCTCTGGGTCATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCAGCTATTGGGGGGTGGGTCATTCTCAACAGCTCTGGGTCATTA  300

seq1  GCCACAGACTCAGATAAAGGCCAGGGTGATGACATGGGTACTAGTCACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGACTCAGATAAAGGCCAGGGTGATGACATGGGTACTAGTCACTC  350

seq1  TCTTTTCACATCAAGGTGAATTC  373
      |||||||||||||||||||||||
seq2  TCTTTTCACATCAAGGTGAATTC  373