BAC Information

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BAC

Clone NameB6Ng01-114M14
Chromosome7 (Build37)
Map Location 50,532,066 - 50,694,402
singlet/doubletdoublet
Overlap geneZfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7
Upstream geneGprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620
Downstream geneCldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114M14.bB6Ng01-114M14.g
ACCDH920218DH920219
length1,147736
definitionDH920218|Mus musculus domesticus DNA, BAC clone: B6Ng01-114M14, 5' end.DH920219|Mus musculus domesticus DNA, BAC clone: B6Ng01-114M14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,532,066 - 50,533,216)(50,693,669 - 50,694,402)
sequence
gaattcaaaattcagtcgctatagatacaagttgtgcatctagattggac
aaatgtgctctacattactcaatcatctatgaaatccccagctacttatg
gctcctaggaccacgtggttccggcttatcatcctctcccccagattcca
tcttgtttctcccatctgtctctctgtctctgtctctgtctctgtctctc
tctctctgttccccccaccccctctataactttcagttccgtcttccctt
ccactgcccaatcacaggctctaaccttatctgactaattaagatttcac
ctgaccacacccgaatacatacattcttgagagagcagaacacgcaaaca
actgtctacaacaaagcttcaggaactcagtttgaatccacctctctctt
gtcgaactgcctctagataagtgctgtcaatcagtagccagtttctccac
ctgcctacctcttctccctgactgtgggatctctccccttgtcccaggtt
ttgtagctctcttcccctactaccaggactatgggcctaaaagtaagaaa
aacttccccctgaacgccttaactttatcttctgcccctaatattggttt
cagcatcctgccaggttccgatgttccctcaaaatctgaatcctgggtaa
cttcaaagaggttagccccaggtggtccatcctcacagtctgcttcaact
aggcctgcactttaatagacccagatggtcccacagagccagaacaatga
ggaaaacagccgtgtcttccaggacttggccagcatcccagctttcttgg
gtccccaaagatgtcgacactgtcagaaagtaggaaacggtctaaaaagc
agcatcccgtttcctgcctcacccagtcaactcttcctaggtccttatat
tttatataaacacaaggaaggatgttagaactcagcacacccacacacac
tgcctgtcctcagagactcagtgctagcagctacatcattgctagtcacc
aaccctttaaaagggtccctgccatcacagtcagctctatctcctggtct
gtctgtctgatctctgactcgctgtccaacccccatttcctagaaacttt
tactacccccaccccccacaatgaatttcttgggtggtaagatctgt
gaattcaaggactgcctgggcagttagtgaaaccttgcctcaaaaagtgt
aagagagtttgaggatgtagctaggtgatcaagggcttgccttagctggc
aggaggctctgcattccgtcttctatgtttaaccaaaataatagttgcta
agtgtcatatctggttaaaaaaatgacatgcctgggcttagttttttttc
ccacatcctcaggctgtggctgtcatctgcctgtgtcaaagactggtggt
tagagcttgggcgtgatgcatatcaatgtccccagagtggaccacagaaa
gagaagaggggaaagggggggggaagagagagaaatctagtaagagaggt
catttggtgaagaaaagagaaagatagaaagaacgacactaaagacacga
gagagacacccagagcttatggccacccagggcagaatatgctataggta
ggcaggtctgcctgcatagctctcaccctccctgagagatcctgtgccac
ccaccataggcttatatatgcatgacttaggtgctggggatgcaacttgg
acctcattcatgctcagcaagtctctataactgagccatcatcccagccc
tcttgtttagctttgtaccttgaggtaggtctcactacgttgccttagct
ggccttgaactctctatgttgccccaggcagactttgaagttgtgatgct
ccttgctccagccaccctgagtaactggggatgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_50532066_50533216
seq2: B6Ng01-114M14.b_46_1192

seq1  GAATTCAAAATTCAGTCGCTATAGATACAAGTTGTGCATCTAGATTGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATTCAGTCGCTATAGATACAAGTTGTGCATCTAGATTGGAC  50

seq1  AAATGTGCTCTACATTACTCAATCATCTATGAAATCCCCAGCTACTTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGCTCTACATTACTCAATCATCTATGAAATCCCCAGCTACTTATG  100

seq1  GCTCCTAGGACCACGTGGTTCCGGCTTATCATCCTCTCCCCCAGATTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTAGGACCACGTGGTTCCGGCTTATCATCCTCTCCCCCAGATTCCA  150

seq1  TCTTGTTTCTCCCATCTGTCTCTCTGTCTCTGTCTCTGTCTCTGTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTCTCCCATCTGTCTCTCTGTCTCTGTCTCTGTCTCTGTCTCTC  200

seq1  TCTCTCTGTTCCCCCCACCCCCTCTATAACTTTCAGTTCCGTCTTCCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGTTCCCCCCACCCCCTCTATAACTTTCAGTTCCGTCTTCCCTT  250

seq1  CCACTGCCCAATCACAGGCTCTAACCTTATCTGACTAATTAAGATTTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCCCAATCACAGGCTCTAACCTTATCTGACTAATTAAGATTTCAC  300

seq1  CTGACCACACCCGAATACATACATTCTTGAGAGAGCAGAACACGCAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCACACCCGAATACATACATTCTTGAGAGAGCAGAACACGCAAACA  350

seq1  ACTGTCTACAACAAAGCTTCAGGAACTCAGTTTGAATCCACCTCTCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTACAACAAAGCTTCAGGAACTCAGTTTGAATCCACCTCTCTCTT  400

seq1  GTCGAACTGCCTCTAGATAAGTGCTGTCAATCAGTAGCCAGTTTCTCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAACTGCCTCTAGATAAGTGCTGTCAATCAGTAGCCAGTTTCTCCAC  450

seq1  CTGCCTACCTCTTCTCCCTGACTGTGGGATCTCTCCCCTTGTCCCAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTACCTCTTCTCCCTGACTGTGGGATCTCTCCCCTTGTCCCAGGTT  500

seq1  TTGTAGCTCTCTTCCCCTACTACCAGGACTATGGGCCTAAAAGTAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCTCTCTTCCCCTACTACCAGGACTATGGGCCTAAAAGTAAGAAA  550

seq1  AACTTCCCCCTGAACGCCTTAACTTTATCTTCTGCCCCTAATATTGGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCCCCTGAACGCCTTAACTTTATCTTCTGCCCCTAATATTGGTTT  600

seq1  CAGCATCCTGCCAGGTTCCGATGTTCCCTCAAAATCTGAATCCTGGGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCCTGCCAGGTTCCGATGTTCCCTCAAAATCTGAATCCTGGGTAA  650

seq1  CTTCAAAGAGGTTAGCCCCAGGTGGTCCATCCTCACAGTCTGCTTCAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGAGGTTAGCCCCAGGTGGTCCATCCTCACAGTCTGCTTCAACT  700

seq1  AGGCCTGCACTTTAATAGACCCAGATGGTCCCACAGAGCCAGAACAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGCACTTTAATAGACCCAGATGGTCCCACAGAGCCAGAACAATGA  750

seq1  GGAAAACAGCCGTGTCTTCCAGGACTTGGCCAGCATCCCAGCTTTCTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACAGCCGTGTCTTCCAGGACTTGGCCAGCATCCCAGCTTTCTTGG  800

seq1  GTCCCCAAAGATGTCGACACTGTCAGAAAGTAGGAAACGGTCTAAAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCAAAGATGTCGACACTGTCAGAAAGTAGGAAACGGTCTAAAAAGC  850

seq1  AGCATCCCGTTTCCTGCCTCACCCAGTCAACTCTTCCTAGGTCCTTATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCCGTTTCCTGCCTCACCCAGTCAACTCTTCCTAGGTCCTTATAT  900

seq1  TTTATAATAAACACAAGGAAGGAATGTTAGAACTCAGGCACACCCACACA  950
      ||||| |||||||||||||||| ||||||||||||| |||||||||||||
seq2  TTTAT-ATAAACACAAGGAAGG-ATGTTAGAACTCA-GCACACCCACACA  947

seq1  CACTGCCTGTCCTCAGAGACTCAGTGCTAGCAGCTACATCATTGCTAGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCTGTCCTCAGAGACTCAGTGCTAGCAGCTACATCATTGCTAGTC  997

seq1  ACCAACCCTTTAAAAGGGTCCCCTGCCATCACAGTCAGCTCTATCTCCTG  1050
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACCAACCCTTTAAAAGGGT-CCCTGCCATCACAGTCAGCTCTATCTCCTG  1046

seq1  GTCTGTCTGTTTCTGTTTCTCTGACTCGCTGTCACACCCCCA-TTCCTAG  1099
      |||||||||  ||||  ||||||||||||||||  ||||||| |||||||
seq2  GTCTGTCTG--TCTG-ATCTCTGACTCGCTGTCCAACCCCCATTTCCTAG  1093

seq1  ATAACCTTTTACTACCCCCA-CCCCCACAATGAATCTCTTGTGTG---AG  1145
        || ||||||||||||||| |||||||||||||| ||||| |||   ||
seq2  --AAACTTTTACTACCCCCACCCCCCACAATGAATTTCTTGGGTGGTAAG  1141

seq1  ATCTGT  1151
      ||||||
seq2  ATCTGT  1147

seq1: chr7_50693669_50694402
seq2: B6Ng01-114M14.g_67_802 (reverse)

seq1  TCTCAT-CCCAGTTACTCA-GGTGGCTGGAGCAAGGAGCATCACAACTTC  48
      | |||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  TATCATCCCCAGTTACTCAGGGTGGCTGGAGCAAGGAGCATCACAACTTC  50

seq1  AAAGTCTGCCT-GGGCAACATAGAGAGTTCAAGGCCAGCTAAGGCAACGT  97
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTGCCTGGGGCAACATAGAGAGTTCAAGGCCAGCTAAGGCAACGT  100

seq1  AGTGAGACCCTACCTCAAGGTACAAAGCTAAACAAGAGGGCTGGGATGAT  147
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGA-CCTACCTCAAGGTACAAAGCTAAACAAGAGGGCTGGGATGAT  149

seq1  GGCTCAGTTATAGAGACTTGCTGAGCATGAATGAGGTCCAAGTTGCATCC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGTTATAGAGACTTGCTGAGCATGAATGAGGTCCAAGTTGCATCC  199

seq1  CCAGCACCTAAGTCATGCATATATAAGCCTATGGTGGGTGGCACAGGATC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACCTAAGTCATGCATATATAAGCCTATGGTGGGTGGCACAGGATC  249

seq1  TCTCAGGGAGGGTGAGAGCTATGCAGGCAGACCTGCCTACCTATAGCATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGGAGGGTGAGAGCTATGCAGGCAGACCTGCCTACCTATAGCATA  299

seq1  TTCTGCCCTGGGTGGCCATAAGCTCTGGGTGTCTCTCTCGTGTCTTTAGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCCTGGGTGGCCATAAGCTCTGGGTGTCTCTCTCGTGTCTTTAGT  349

seq1  GTCGTTCTTTCTATCTTTCTCTTTTCTTCACCAAATGACCTCTCTTACTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTCTTTCTATCTTTCTCTTTTCTTCACCAAATGACCTCTCTTACTA  399

seq1  GATTTCTCTCTCTTCCCCCCCCCTTTCCCCTCTTCTCTTTCTGTGGTCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTCTCTCTTCCCCCCCCCTTTCCCCTCTTCTCTTTCTGTGGTCCA  449

seq1  CTCTGGGGACATTGATATGCATCACGCCCAAGCTCTAACCACCAGTCTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGACATTGATATGCATCACGCCCAAGCTCTAACCACCAGTCTTT  499

seq1  GACACAGGCAGATGACAGCCACAGCCTGAGGATGTGGGAAAAAAAACTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGGCAGATGACAGCCACAGCCTGAGGATGTGGGAAAAAAAACTAA  549

seq1  GCCCAGGCATGTCATTTTTTTAACCAGATATGACACTTAGCAACTATTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGCATGTCATTTTTTTAACCAGATATGACACTTAGCAACTATTAT  599

seq1  TTTGGTTAAACATAGAAGACGGAATGCAGAGCCTCCTGCCAGCTAAGGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTAAACATAGAAGACGGAATGCAGAGCCTCCTGCCAGCTAAGGCA  649

seq1  AGCCCTTGATCACCTAGCTACATCCTCAAACTCTCTTACACTTTTTGAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTGATCACCTAGCTACATCCTCAAACTCTCTTACACTTTTTGAGG  699

seq1  CAAGGTTTCACTAACTGCCCAGGCAGTCCTTGAATTC  734
      |||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTTCACTAACTGCCCAGGCAGTCCTTGAATTC  736