BAC Information

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BAC

Clone NameB6Ng01-115D18
Chromosome7 (Build37)
Map Location 31,591,020 - 31,778,186
singlet/doubletdoublet
Overlap geneFfar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162
Upstream gene6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap
Downstream geneFxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a, LOC672598, LOC100043323, LOC100043827, Apbh, Abpe, LOC100043326, EG384585, LOC100043328, LOC100043331, LOC626181, LOC100043334, LOC100043834, LOC546947, LOC677233, LOC100043337, LOC546949, LOC100043836, EG626305, EG668342, EG626330, LOC100043340, LOC100043343, EG626358, LOC668351, EG384593, LOC100043351, LOC100043352, LOC100043353, EG384594
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115D18.bB6Ng01-115D18.g
ACCDH920552DH920553
length1,111763
definitionDH920552|Mus musculus domesticus DNA, BAC clone: B6Ng01-115D18, 5' end.DH920553|Mus musculus domesticus DNA, BAC clone: B6Ng01-115D18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,777,071 - 31,778,186)(31,591,020 - 31,591,781)
sequence
gaattcacctttctgggtctccacttcctccctagactctcactgtatgc
ttattgggtccctatgttccagctctttcaaaagttgggcataccatagg
gaaataacaaatttctgacctagaactctgtttagctaattagtgaaaaa
aaaaacattaattttatgaaagtagtaagttttggaaggaacatgtatca
gtcaggatgaaccaggctgtgctgtggtaacaaacatctcccatgtctta
gtggcttacaatcacaccaggttacttcctgggggccacatctgttgtgg
gttggctgcaattctggtggatggttagcctttatctccagcacgggggg
ggggggctctgcagagagcaagagaaccctgggttcctgtcccctctctc
attctctctctctctctctctctctctctccctccctccctctctcttag
tctgaaagtgtctcatgttaacccttctgtacctaaggagatcagaaatc
accttatcctatgctgaggatgtagagacaggaattacgggagcttcccc
aactgttctaaaattatctatgtcctgggaagactccatggtgttgacag
aactcatttcttgctgtctgtatagctgagagatcaggctaattgctggc
catcaactagaggccattgtgaagtcccagaggccatttacagaagtccc
tatggtccctagctctgcagttccttgtcacacagttgatgagggagttg
gccttcttactgtgacaaaatgcctgcctgagattatcagcttatcagga
gagaaggtttatttgtgactaacagttccaaaggcctgggtgcagggttg
gctgcttcaaaggcacgtgacacaggaagttgctttacttccttagcagc
tgagaagcaaatgatggaaaagcaccaacagcccttcaaggacgcaatcc
gttccctctaaaggttcggttcccagtgccgcacaagctgggtacaggct
tgccagtggactctatgggggcatggattgaaatacagcagctgtgcatg
gcatcagccatcagaacactctgccaaaggctggaactgaattatgggct
gcccacctcat
gaattccacaggaggcccgggagctggctgtggccatggagtctctagac
aatcagctgtggtttgtatgccaggtgtactcatggcgtcgaacacccaa
tgcccagcagggggcgctgtttgggaaccgtgcagagggtttagtaggca
ttaacttggcttgaggaagtggttctattagagatggacctccccctaac
cctgcacataggtagctatgcagcttggtgttcatacaggttccccaaca
actggagccggggcttaccatgactgttgcctgtggatcctgttccccta
actaggctgccttgtctggcctcagtgggagaggctgtgcctggtcctgc
agtgacttaataagccagagtgggttggtacccagggggtcctacctctt
tccagaggagaaggggatggaggagggcctgcgtgaggcggggactgggc
ggagagggctgcaatcagtatgtaaagtgaatgaatgaatagatgaatga
atgaataaataaacagggaaaaaaaagagatgagatttaagggtggtaac
caggacacggctcccatccgagcaacaatgacacaaaggtaacacattac
tcaagctccatgtctgttaaaccgcataggagaggagagggtttgttttg
gcgtggaaatctaaggtacagcccatcattttagggaagtcaaggcagga
actgaagcagctgaaccatattcaatccacagcaaagacagaccacacat
ctttgctttgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_31777071_31778186
seq2: B6Ng01-115D18.b_44_1154 (reverse)

seq1  ATGAGGT-GGCAGCACATAATTCCGTCTCAGACTTTTGCAGAGTG-TCTG  48
      ||||||| |||||| |||||||| ||  ||| |||| |||||||| ||||
seq2  ATGAGGTGGGCAGCCCATAATTCAGTTCCAGCCTTTGGCAGAGTGTTCTG  50

seq1  ATGGCTTGATGCCATGCACAGCTGCTGTGATTTCAATCCATGCCCCCCAT  98
      ||||| |||||||||||||||||||||| ||||||||||||| |||||||
seq2  ATGGC-TGATGCCATGCACAGCTGCTGT-ATTTCAATCCATG-CCCCCAT  97

seq1  AGAGTCACCTGGCCAAGCCTGGTACCCAGCCTGTGCCGCCACTGGGAAAC  148
      ||||||  |||| ||||||| ||||||||| |||| || ||||||| |||
seq2  AGAGTCCACTGG-CAAGCCT-GTACCCAGCTTGTG-CGGCACTGGG-AAC  143

seq1  GGAACCTTTAGAGGGGAACGGATTGCGTCTTTGAAGGGCTGTTGGTGCTT  198
       ||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  CGAACCTTTAGA-GGGAACGGATTGCGTCCTTGAAGGGCTGTTGGTGCTT  192

seq1  TTCCATCATTTTGCTTCTCAGCTGCT-AGGAAGT-AAGCAACTTCCTGTG  246
      |||||||| ||||||||||||||||| ||||||| |||||||||||||||
seq2  TTCCATCA-TTTGCTTCTCAGCTGCTAAGGAAGTAAAGCAACTTCCTGTG  241

seq1  TCACGTGCCTTTGAAGCAGCCAACCCTGCACCCAGGCCTTTGGAACTGTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTGCCTTTGAAGCAGCCAACCCTGCACCCAGGCCTTTGGAACTGTT  291

seq1  AGTCACAAATAAACCTTCTCTCCTGATAAGCTGATAATCTCAGGCAGGCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAAATAAACCTTCTCTCCTGATAAGCTGATAATCTCAGGCAGGCA  341

seq1  TTTTGTCACAGTAAGAAGGCCAACTCCCTCATCAACTGTGTGACAAGGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCACAGTAAGAAGGCCAACTCCCTCATCAACTGTGTGACAAGGAA  391

seq1  CTGCAGAGCTAGGGACCATAGGGACTTCTGTAAATGGCCTCTGGGACTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGCTAGGGACCATAGGGACTTCTGTAAATGGCCTCTGGGACTTC  441

seq1  ACAATGGCCTCTAGTTGATGGCCAGCAATTAGCCTGATCTCTCAGCTATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGCCTCTAGTTGATGGCCAGCAATTAGCCTGATCTCTCAGCTATA  491

seq1  CAGACAGCAAGAAATGAGTTCTGTCAACACCATGGAGTCTTCCCAGGACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGCAAGAAATGAGTTCTGTCAACACCATGGAGTCTTCCCAGGACA  541

seq1  TAGATAATTTTAGAACAGTTGGGGAAGCTCCCGTAATTCCTGTCTCTACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAATTTTAGAACAGTTGGGGAAGCTCCCGTAATTCCTGTCTCTACA  591

seq1  TCCTCAGCATAGGATAAGGTGATTTCTGATCTCCTTAGGTACAGAAGGGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCATAGGATAAGGTGATTTCTGATCTCCTTAGGTACAGAAGGGT  641

seq1  TAACATGAGACACTTTCAGACTAAGAGAGAGGGAGGGAGGGAGAGAGAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGAGACACTTTCAGACTAAGAGAGAGGGAGGGAGGGAGAGAGAGA  691

seq1  GAGAGAGAGAGAGAGAGAATGAGAGAGGGGACAGGAACCCAGGGTTCTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAATGAGAGAGGGGACAGGAACCCAGGGTTCTCT  741

seq1  TGCTCTCTGCAGAGCCCCCCCCCCCCGTGCTGGAGATAAAGGCTAACCAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTGCAGAGCCCCCCCCCCCCGTGCTGGAGATAAAGGCTAACCAT  791

seq1  CCACCAGAATTGCAGCCAACCCACAACAGATGTGGCCCCCAGGAAGTAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGAATTGCAGCCAACCCACAACAGATGTGGCCCCCAGGAAGTAAC  841

seq1  CTGGTGTGATTGTAAGCCACTAAGACATGGGAGATGTTTGTTACCACAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGATTGTAAGCCACTAAGACATGGGAGATGTTTGTTACCACAGC  891

seq1  ACAGCCTGGTTCATCCTGACTGATACATGTTCCTTCCAAAACTTACTACT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGGTTCATCCTGACTGATACATGTTCCTTCCAAAACTTACTACT  941

seq1  TTCATAAAATTAATGTTTTTTTTTTCACTAATTAGCTAAACAGAGTTCTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAAATTAATGTTTTTTTTTTCACTAATTAGCTAAACAGAGTTCTA  991

seq1  GGTCAGAAATTTGTTATTTCCCTATGGTATGCCCAACTTTTGAAAGAGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAAATTTGTTATTTCCCTATGGTATGCCCAACTTTTGAAAGAGCT  1041

seq1  GGAACATAGGGACCCAATAAGCATACAGTGAGAGTCTAGGGAGGAAGTGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATAGGGACCCAATAAGCATACAGTGAGAGTCTAGGGAGGAAGTGG  1091

seq1  AGACCCAGAAAGGTGAATTC  1116
      ||||||||||||||||||||
seq2  AGACCCAGAAAGGTGAATTC  1111

seq1: chr7_31591020_31591781
seq2: B6Ng01-115D18.g_67_829

seq1  GAATTCCACAGGAGGCCCGGGAGCTGGCTGTGGCCATGGAGTCTCTAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGGAGGCCCGGGAGCTGGCTGTGGCCATGGAGTCTCTAGAC  50

seq1  AATCAGCTGTGGTTTGTATGCCAGGTGTACTCATGGCGTCGAACACCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCTGTGGTTTGTATGCCAGGTGTACTCATGGCGTCGAACACCCAA  100

seq1  TGCCCAGCAGGGGGCGCTGTTTGGGAACCGTGCAGAGGGTTTAGTAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGCAGGGGGCGCTGTTTGGGAACCGTGCAGAGGGTTTAGTAGGCA  150

seq1  TTAACTTGGCTTGAGGAAGTGGTTCTATTAGAGATGGACCTCCCCCTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTGGCTTGAGGAAGTGGTTCTATTAGAGATGGACCTCCCCCTAAC  200

seq1  CCTGCACATAGGTAGCTATGCAGCTTGGTGTTCATACAGGTTCCCCAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACATAGGTAGCTATGCAGCTTGGTGTTCATACAGGTTCCCCAACA  250

seq1  ACTGGAGCCGGGGCTTACCATGACTGTTGCCTGTGGATCCTGTTCCCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGCCGGGGCTTACCATGACTGTTGCCTGTGGATCCTGTTCCCCTA  300

seq1  ACTAGGCTGCCTTGTCTGGCCTCAGTGGGAGAGGCTGTGCCTGGTCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCTGCCTTGTCTGGCCTCAGTGGGAGAGGCTGTGCCTGGTCCTGC  350

seq1  AGTGACTTAATAAGCCAGAGTGGGTTGGTACCCAGGGGGTCCTACCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTTAATAAGCCAGAGTGGGTTGGTACCCAGGGGGTCCTACCTCTT  400

seq1  TCCAGAGGAGAAGGGGATGGAGGAGGGCCTGCGTGAGGCGGGGACTGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGAGAAGGGGATGGAGGAGGGCCTGCGTGAGGCGGGGACTGGGC  450

seq1  GGAGAGGGCTGCAATCAGTATGTAAAGTGAATGAATGAATAGATGAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGCTGCAATCAGTATGTAAAGTGAATGAATGAATAGATGAATGA  500

seq1  ATGAATAAATAAACAGGGAAAAAAAAGAGATGAGATTTAAGGGTGGTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAAATAAACAGGGAAAAAAAAGAGATGAGATTTAAGGGTGGTAAC  550

seq1  CAGGACACGGCTCCCATCCGAGCAACAATGACACAAAGGTAACACATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACACGGCTCCCATCCGAGCAACAATGACACAAAGGTAACACATTAC  600

seq1  TCAAGCTCCATGTCTGTTAAACCGCATAGGAGAGGAGAGGGTTTG-TTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCAAGCTCCATGTCTGTTAAACCGCATAGGAGAGGAGAGGGTTTGTTTTG  650

seq1  GCGTGGAAATCTAAGGTACAGCCCATCATTTTAGGGAAGTCAAGGCAGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGAAATCTAAGGTACAGCCCATCATTTTAGGGAAGTCAAGGCAGGA  700

seq1  ACTGAAGCAGCTG-AGCACATTCAATCCACAGCAAAGACAGACCACACAT  748
      ||||||||||||| | || |||||||||||||||||||||||||||||||
seq2  ACTGAAGCAGCTGAACCATATTCAATCCACAGCAAAGACAGACCACACAT  750

seq1  CTTTGCTTATGCTT  762
      |||||||| |||||
seq2  CTTTGCTT-TGCTT  763