BAC Information

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BAC

Clone NameB6Ng01-115J14
Chromosome7 (Build37)Y (Build37)
Map Location 5,523,955 - 5,525,1621,870,346 - 1,870,415
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePtprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705
Downstream geneLOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115J14.bB6Ng01-115J14.g
ACCDH920821DH920822
length1,187432
definitionDH920821|Mus musculus domesticus DNA, BAC clone: B6Ng01-115J14, 5' end.DH920822|Mus musculus domesticus DNA, BAC clone: B6Ng01-115J14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,523,955 - 5,525,162)(1,870,346 - 1,870,415)
sequence
gaattcagtgtcacaaacatgagaagaagacattatctccagaaacattt
ctccaacaactaatttgtatttcttaatatactgttataacatgaggaaa
gatgttgaatgctaatgaagcaaaaatgcacttctgtctataaatgttca
tgtatcaatatgcagagaccataaaatttatgtcatgttgttgaccaaca
gagatggagttgcatcatatatacatctccttcataaaggaatttaaagt
aagataagtgtaaaattggtaatctagatcaatgtctacaaattgtcttc
cagacatagctcctgcagtgtcatatagttgttccacatttctttgggaa
aaggactccaaatcagttcaaagacttagataattgaggagacaattgaa
gacaggattgtcaaaattgatcattactccattgtctaatgaagccatct
ccatgctgtcccataataaaaccctgaaaaacaaggaggaaatggctcta
aatatatttttgctttgtcaggttggggttgggactgtggcaaatttcct
tctgttcatccataatttccctgtaattttgactgtcaacccacacccat
acaggacttagtaacaaacttagtggtggccagtgcattcaatctcatcc
tcttggcaattccaaacatcagtacagtatttcttccatggaaggccccc
agtgacctctcatgtaaactttggtacttcgtttgcctggtggctctaag
cacaaacttgtcttccacctgtgtcttgagcacctaccagtttgtcatac
ttcttcctggtaaatggagcagagtcatgctcagaggaagagtctttatc
tatcgtaaatcagataggggactaatatccattgtatataaaggaactca
acaggtggactccagaaaatcaaataaccccattaaaaaatggggctcag
agctaaaaaaagaattctcacctgaggaataccaaatggcagagaagcac
ctgaaaaatgttcagcatccttatcatcaggaaatgcaaagcaaacactc
tgagatcatctcacacagtcagcatggctaagatcaaaattcaggtgaca
gcgatgctggcagatgtaagaaagaggaaccctcctccattggtggtggg
atgcaagtgtaacaatctgaatcagtctggtgtcctc
gaattctttgtttagctctgagccccatttttaaattgtgaaacacatga
aactcaaaaagaacaaagaccaatgtgtggatactttgccccttcttaaa
attcggaagaaaacacccagagaaggaattacagagacacagtttggagc
tgagatgaaaggctggaccatctagagactgccatatccggggatccatc
ccataatctgcttccaaacgcttacactattgaatagactagcaagattt
tgctgaaaggacccagatatagctcttgtgagactatgacagggtctagc
aaacacagaagtggaagctcacagtcagctattggatggatcacagggcc
cccaaaggaggagctagagaaagtacccaaggtgctggggggatctcaac
cctataggtggaacaacaatatgaactaacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5523955_5525162
seq2: B6Ng01-115J14.b_49_1235 (reverse)

seq1  GAGGAACCACCAGACTGATTTCCAGATTGGTTGTACAACCTTGCAATCCC  50
      |||||  |||||||||||||  |||||||    ||||  ||||| |||||
seq2  GAGGA--CACCAGACTGATT--CAGATTG---TTACA--CTTGC-ATCCC  40

seq1  ACCAACAATGGAGGAGTGTTCCTCTTTCTCTACATCCTTGCCAGCATCTG  100
      |||| ||||||||||| |||||||||||| ||||||  |||||||||| |
seq2  ACCACCAATGGAGGAGGGTTCCTCTTTCT-TACATC--TGCCAGCATC-G  86

seq1  CTGTCACCTGAATTTTTGATCTTAGCCATGCTGACTGGTGTGAGATGGAA  150
      |||||||||||| ||||||||||||||||||||||| ||||||||||  |
seq2  CTGTCACCTGAA-TTTTGATCTTAGCCATGCTGACT-GTGTGAGATG--A  132

seq1  TCTCAGAGTTGTTTGCTTTGCATTTCCCTGATGATTAAGGATGCTGAACA  200
      |||||||| |||||||||||||||| |||||||| |||||||||||||||
seq2  TCTCAGAG-TGTTTGCTTTGCATTT-CCTGATGA-TAAGGATGCTGAACA  179

seq1  TTTTTTCAGGTGCTTCTCTGCCATTTGGTATTCCTCAGGTGAGAATTCTT  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTTTCAGGTGCTTCTCTGCCATTTGGTATTCCTCAGGTGAGAATTCTT  228

seq1  TTTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAG  278

seq1  TCCACCTGTTGAGTTCC-TTATATACAATGGATATTAGTCCCCTATCTGA  349
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCCACCTGTTGAGTTCCTTTATATACAATGGATATTAGTCCCCTATCTGA  328

seq1  TTTACGATAGATAAAGACTCTTCCTCTGAGCATGACTCTGCTCCATTTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGATAGATAAAGACTCTTCCTCTGAGCATGACTCTGCTCCATTTAC  378

seq1  CAGGAAGAAGTATGACAAACTGGTAGGTGCTCAAGACACAGGTGGAAGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGAAGTATGACAAACTGGTAGGTGCTCAAGACACAGGTGGAAGAC  428

seq1  AAGTTTGTGCTTAGAGCCACCAGGCAAACGAAGTACCAAAGTTTACATGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGTGCTTAGAGCCACCAGGCAAACGAAGTACCAAAGTTTACATGA  478

seq1  GAGGTCACTGGGGGCCTTCCATGGAAGAAATACTGTACTGATGTTTGGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCACTGGGGGCCTTCCATGGAAGAAATACTGTACTGATGTTTGGAA  528

seq1  TTGCCAAGAGGATGAGATTGAATGCACTGGCCACCACTAAGTTTGTTACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAGAGGATGAGATTGAATGCACTGGCCACCACTAAGTTTGTTACT  578

seq1  AAGTCCTGTATGGGTGTGGGTTGACAGTCAAAATTACAGGGAAATTATGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTGTATGGGTGTGGGTTGACAGTCAAAATTACAGGGAAATTATGG  628

seq1  ATGAACAGAAGGAAATTTGCCACAGTCCCAACCCCAACCTGACAAAGCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAGAAGGAAATTTGCCACAGTCCCAACCCCAACCTGACAAAGCAA  678

seq1  AAATATATTTAGAGCCATTTCCTCCTTGTTTTTCAGGGTTTTATTATGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTTAGAGCCATTTCCTCCTTGTTTTTCAGGGTTTTATTATGGG  728

seq1  ACAGCATGGAGATGGCTTCATTAGACAATGGAGTAATGATCAATTTTGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATGGAGATGGCTTCATTAGACAATGGAGTAATGATCAATTTTGAC  778

seq1  AATCCTGTCTTCAATTGTCTCCTCAATTATCTAAGTCTTTGAACTGATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGTCTTCAATTGTCTCCTCAATTATCTAAGTCTTTGAACTGATTT  828

seq1  GGAGTCCTTTTCCCAAAGAAATGTGGAACAACTATATGACACTGCAGGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCTTTTCCCAAAGAAATGTGGAACAACTATATGACACTGCAGGAG  878

seq1  CTATGTCTGGAAGACAATTTGTAGACATTGATCTAGATTACCAATTTTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCTGGAAGACAATTTGTAGACATTGATCTAGATTACCAATTTTAC  928

seq1  ACTTATCTTACTTTAAATTCCTTTATGAAGGAGATGTATATATGATGCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATCTTACTTTAAATTCCTTTATGAAGGAGATGTATATATGATGCAA  978

seq1  CTCCATCTCTGTTGGTCAACAACATGACATAAATTTTATGGTCTCTGCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTCTGTTGGTCAACAACATGACATAAATTTTATGGTCTCTGCAT  1028

seq1  ATTGATACATGAACATTTATAGACAGAAGTGCATTTTTGCTTCATTAGCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATACATGAACATTTATAGACAGAAGTGCATTTTTGCTTCATTAGCA  1078

seq1  TTCAACATCTTTCCTCATGTTATAACAGTATATTAAGAAATACAAATTAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCTTTCCTCATGTTATAACAGTATATTAAGAAATACAAATTAG  1128

seq1  TTGTTGGAGAAATGTTTCTGGAGATAATGTCTTCTTCTCATGTTTGTGAC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGAGAAATGTTTCTGGAGATAATGTCTTCTTCTCATGTTTGTGAC  1178

seq1  ACTGAATTC  1208
      |||||||||
seq2  ACTGAATTC  1187

seq1: chrY_1870346_1870415
seq2: B6Ng01-115J14.g_430_498

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||||||||||||| |||   ||||||| ||||||||||||||||
seq2  CTAGAGAAAGTACCCAAGGTGCTGGGGGGATCT-CAACCCTATAGGTGGA  49

seq1  ACAACATTATGAACTAACCA  70
      |||||| |||||||||||||
seq2  ACAACAATATGAACTAACCA  69