BAC Information

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BAC

Clone NameB6Ng01-115J16
Chromosome7 (Build37)7 (Build37)
Map Location 18,332,262 - 18,333,3517,385,879 - 7,386,405
singlet/doubletsingletsinglet
Overlap genePsg30
Upstream geneAp2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767
Downstream genePpia-ps7_184.1, Ceacam14, EG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115J16.bB6Ng01-115J16.g
ACCDH920825DH920826
length1,091847
definitionDH920825|Mus musculus domesticus DNA, BAC clone: B6Ng01-115J16, 5' end.DH920826|Mus musculus domesticus DNA, BAC clone: B6Ng01-115J16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,332,262 - 18,333,351)(7,385,879 - 7,386,405)
sequence
gaattccctgagctagacctgagaggacaaacatttcttaggcagactaa
tatccattcctctctccttgtcaactatgactttcctataagccccataa
gcccatcaagacagttagttaataggctggaaacatgtccagctatgcta
tccttgctcggtaactaggaagtatcccattttcttctcaaacaggtgta
ttcatagtctctgaggatctttctcaaggacaagttcctggacagaatcc
caaggatgtaggcaggggctgatatccttgggatgaattacccaccatga
ctttacctgcatggtgaagtcaaataaaacattctaatcaattacagtta
ttctgcaccatgtgagtcctacactaaatgcccaagccctaacagggaga
tacaacagagagggagttgtctatgtgtatactgaagtaagtacaaaaac
cccagatttaagaaaaaatgcaatgggaaagtcaatatgtctagttcctt
ctagacagttcagtgtataaagtagaagagtcacttactatttacatgga
gttgaatgtaggctttttcaatctttaagtcttctcttaaaatttctagc
aggaaatatcctgcatcatcctcagtgacatcaattattagcatggatcc
gttgttgtatataaactctcttgaactgtatgcactccccaaaatggtgg
catccatggctctcttgtattctgcaattttgtatgtatctcttctatat
gctgatttgtaccagaaaaatgcttgaaagtcttcaggcaaattatgaac
taagagaagaacagttttccctacagcaacattctgaggaagtgattcga
tctttgacttgcaaagggtgataacaagtcaaagataggctagacaaaaa
agagaaagaaaaattatcactgtgaatattgagttggaggaaaagtgata
atctttgtcatgtgcaagtagatttatcactcagcgtaaagttgtaggta
tgggtatgcctatcctacttggtgaatgtcaacaacttgacttctaattc
ttctcaaggacactgagttgatcatttctctgctaggtctc
gaattcaattgctatattgaataggcagggagaaagtgggcagtttgtct
agtcccttattttagtgggattgcttcaagtttctctccattcagtttga
tgttggttactggtttgctgtatattgcttttattatggttaggtatggg
ccttgaatccctgatctttccaagacttttatcatgtagggctgttggat
ttcgtcaaatgctttctcagttctctttctttgttgttttttttttatgt
ggtttagagtaattgtggctttgtagaaagaattgtgtagagtactttct
gtttttattttgtgaaataatttgaggagaattaaaattaggtcttctta
gtaggtttgatagaactctgcactaaacccatatagtcctggcctttttt
tttttttttttttggttgggggactattaatgaatgcttctatttcttta
cgggatatgggactttttagattattgatctgatcctgatttaactttgg
tacctgatatctgtttatgaagttgtccatttcatccaggtttcacaata
aggttgagtaaagccttttgtagtaggattgatgatattttggatttcct
caggttctattgttttgtttcccttttcacttctgattttcttaattagg
atcctgtccctgtgccatcttgttagtctggctaagggtttatcttcttg
tgggttttcttaaagaaccagctcatggtttggttgattctttgaatagt
ctttttgtttccaattggttgatttcagccctgagtttgattatttcctg
catctactcctcttgggtgaatttgcttctttttagtctagagcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_18332262_18333351
seq2: B6Ng01-115J16.b_44_1134 (reverse)

seq1  GAGACCCTAGCAGAGAAATGATACACTCAGTGTCCCTGAG-AGAA-TAGA  48
      |||| |||||||||||||||||  ||||||||||| |||| |||| ||||
seq2  GAGA-CCTAGCAGAGAAATGATCAACTCAGTGTCCTTGAGAAGAATTAGA  49

seq1  AGTCAAGTTGTTGACATTCACCAAGTAGGATAGGCATACCCATACCTACA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGTTGTTGACATTCACCAAGTAGGATAGGCATACCCATACCTACA  99

seq1  ACTTTACGCTGAGTGATAAATCTACTTGCACATGACAAAGATTATCACTT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACGCTGAGTGATAAATCTACTTGCACATGACAAAGATTATCACTT  149

seq1  TTCCTCCAACTCAATATTCACAGTGATAATTTTTCTTTCTCTTTTTTGTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCAACTCAATATTCACAGTGATAATTTTTCTTTCTCTTTTTTGTC  199

seq1  TAGCCTATCTTTTGACTTGTTATCACCCTTTGCAAGTC-AAGATCGAATC  247
      ||||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  TAGCCTATC-TTTGACTTGTTATCACCCTTTGCAAGTCAAAGATCGAATC  248

seq1  ACTTCCTCAGAATGTTGCTGTAGGGAAAACTGTTCTTCTCTTAGTTCATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTCAGAATGTTGCTGTAGGGAAAACTGTTCTTCTCTTAGTTCATA  298

seq1  ATTTGCCTGAAGACTTTCAAGCATTTTTCTGGTACAAATCAGCATATAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCTGAAGACTTTCAAGCATTTTTCTGGTACAAATCAGCATATAGA  348

seq1  AGAGATACATACAAAATTGCAGAATACAAGAGAGCCATGGATGCCACCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATACATACAAAATTGCAGAATACAAGAGAGCCATGGATGCCACCAT  398

seq1  TTTGGGGAGTGCATACAGTTCAAGAGAGTTTATATACAACAACGGATCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGAGTGCATACAGTTCAAGAGAGTTTATATACAACAACGGATCCA  448

seq1  TGCTAATAATTGATGTCACTGAGGATGATGCAGGATATTTCCTGCTAGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATAATTGATGTCACTGAGGATGATGCAGGATATTTCCTGCTAGAA  498

seq1  ATTTTAAGAGAAGACTTAAAGATTGAAAAAGCCTACATTCAACTCCATGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGAGAAGACTTAAAGATTGAAAAAGCCTACATTCAACTCCATGT  548

seq1  AAATAGTAAGTGACTCTTCTACTTTATACACTGAACTGTCTAGAAGGAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTAAGTGACTCTTCTACTTTATACACTGAACTGTCTAGAAGGAAC  598

seq1  TAGACATATTGACTTTCCCATTGCATTTTTTCTTAAATCTGGGGTTTTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATATTGACTTTCCCATTGCATTTTTTCTTAAATCTGGGGTTTTTG  648

seq1  TACTTACTTCAGTATACACATAGACAACTCCCTCTCTGTTGTATCTCCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTTCAGTATACACATAGACAACTCCCTCTCTGTTGTATCTCCCT  698

seq1  GTTAGGGCTTGGGCATTTAGTGTAGGACTCACATGGTGCAGAATAACTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGGCTTGGGCATTTAGTGTAGGACTCACATGGTGCAGAATAACTGT  748

seq1  AATTGATTAGAATGTTTTATTTGACTTCACCATGCAGGTAAAGTCATGGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATTAGAATGTTTTATTTGACTTCACCATGCAGGTAAAGTCATGGT  798

seq1  GGGTAATTCATCCCAAGGATATCAGCCCCTGCCTACATCCTTGGGATTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATTCATCCCAAGGATATCAGCCCCTGCCTACATCCTTGGGATTCT  848

seq1  GTCCAGGAACTTGTCCTTGAGAAAGATCCTCAGAGACTATGAATACACCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGAACTTGTCCTTGAGAAAGATCCTCAGAGACTATGAATACACCT  898

seq1  GTTTGAGAAGAAAATGGGATACTTCCTAGTTACCGAGCAAGGATAGCATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGAAGAAAATGGGATACTTCCTAGTTACCGAGCAAGGATAGCATA  948

seq1  GCTGGACATGTTTCCAGCCTATTAACTAACTGTCTTGATGGGCTTATGGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACATGTTTCCAGCCTATTAACTAACTGTCTTGATGGGCTTATGGG  998

seq1  GCTTATAGGAAAGTCATAGTTGACAAGGAGAGAGGAATGGATATTAGTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATAGGAAAGTCATAGTTGACAAGGAGAGAGGAATGGATATTAGTCT  1048

seq1  GCCTAAGAAATGTTTGTCCTCTCAGGTCTAGCTCAGGGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAGAAATGTTTGTCCTCTCAGGTCTAGCTCAGGGAATTC  1091

seq1: chr7_7385879_7386405
seq2: B6Ng01-115J16.g_405_916 (reverse)

seq1  AAAGCTCTAGAAAAAAAGCAAGCAAATTCACCCAAGAGGAGTAGACGGCA  50
      |||||||||||  ||||  ||||||||||||||||||||||||||  |||
seq2  AAAGCTCTAGACTAAAAAGAAGCAAATTCACCCAAGAGGAGTAGA-TGCA  49

seq1  GGAAATAATCAAACTCAGAGGTGAAATCAACCAAGTGGAAACAAGAAGAA  100
      |||||||||||||||||| | ||||||||||||| ||||||||| ||| |
seq2  GGAAATAATCAAACTCAGGGCTGAAATCAACCAATTGGAAACAAAAAG-A  98

seq1  CTATTCAACGAATCAACAAAATGAGTACCTGGTTCTTTGAGAAAATCCAC  150
      |||||||| |||||||| |||  |  | |||||||||| |||||| ||||
seq2  CTATTCAAAGAATCAACCAAACCATGAGCTGGTTCTTTAAGAAAACCCAC  148

seq1  AAGATAGATAAACTCTTATCCAGACTCACTAGAGGGCACAGGGACAGCAT  200
      |||| |||||||| |||| ||||||| || ||| ||||||||||||| ||
seq2  AAGA-AGATAAACCCTTAGCCAGACTAACAAGATGGCACAGGGACAGGAT  197

seq1  CCTAATTAACAAAATCAGAAGTGAAAAGAGAGACATAACAACAGATCCTG  250
      ||||||||| |||||||||||||||||| || ||| ||||| ||| ||||
seq2  CCTAATTAAGAAAATCAGAAGTGAAAAGGGAAACAAAACAATAGAACCTG  247

seq1  AAGAAATAAAAAACACCATCAGATTCTTCTACAAAATGTTATACTCAACA  300
      | |||||  |||| | ||||| || || |||||||| | | |||||||| 
seq2  AGGAAATCCAAAATATCATCA-ATCCTACTACAAAAGGCTTTACTCAACC  296

seq1  AAACTGGAAAACGTGGGCGGAATGGACACATTTATAGACAGTTACCATGT  350
        | ||  |||| |||  | ||||||||  || ||| |||| || || ||
seq2  TTATTGTGAAACCTGGATGAAATGGACAACTTCATAAACAGATATCAGGT  346

seq1  ACCAAAGTTAAACCAGGATCAGGTCAATGATCTAAACAGTCCCATATCCC  400
      |||||||||||| ||||||||| ||||| ||||||| |||||||||||||
seq2  ACCAAAGTTAAATCAGGATCAGATCAATAATCTAAAAAGTCCCATATCCC  396

seq1  GCAAAGAAATAGAAGCAGTCATTAATAGTCTCCCAACCAAAAAAAAAAAA  450
      | ||||||||||||||| |||||||||||| |||||||          ||
seq2  GTAAAGAAATAGAAGCATTCATTAATAGTCCCCCAACC----------AA  436

seq1  AAAAAAAAAAAAAAAAAGCCCAGGAAGAAGAAGGGTTTAGTGCAGAGTTC  500
      |||||||||||||||||| ||||| |  | | ||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAGGCCAGG-ACTATATGGGTTTAGTGCAGAGTTC  485

seq1  TATGAGATCTTCAAAGAAGACCTAATT  527
      ||| | | || | ||||||||||||||
seq2  TATCAAACCTACTAAGAAGACCTAATT  512