BAC Information

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BAC

Clone NameB6Ng01-115K10
Chromosome7 (Build37)
Map Location 121,622,289 - 121,742,971
singlet/doubletdoublet
Overlap genePde3b, Cyp2r1
Upstream geneMlstd2, EG434228, Spon1, Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik
Downstream geneCalca, LOC100043295, Calcb, Insc, EG627967, LOC668472, Sox6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115K10.bB6Ng01-115K10.g
ACCDH920861DH920862
length1,209927
definitionDH920861|Mus musculus domesticus DNA, BAC clone: B6Ng01-115K10, 5' end.DH920862|Mus musculus domesticus DNA, BAC clone: B6Ng01-115K10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,622,289 - 121,623,540)(121,742,406 - 121,742,971)
sequence
gaattccatcaaaatagttcaaataataatgttttaataaaaaatattct
agataataaaagcagttaagaatatggctaagagaaggctagagacttgc
aacagtagaaagcaccttacctgtgacttgaagaacaggcgttttcaaag
ttcagtcatcaccgaagctgatgaatcctctgaaaacttgcagtctggag
gaccaaatcgttgctggaggagtggtatgcagatccagggaagcagaata
gaggaattaacctgttttacctttgaatacactctagtttcctgctgttg
actcctgctgtgtaagttaagtgtaagcagaaaccagctgcacacagttt
agctgacacagagtatagggcttaactcccttatgtttcaaaggagaaca
aaaaatgggcctaggaggctaaagcagagatgtcctctataccactgcat
gcctcctcttctcatacacgaagccaggctcgtatgtcaagttgctgtgc
tttttacatgctttgctaagcagtgggcacgttgttagcacacagcagta
aactgttaagtataagatggtatttcctaatggctaacaattcctaaagc
actagaattaaatctaaagtatggctagtcatatgattttgtgatgtgta
cttcttcatatgtgaaatggagaaggcccagaattacaggaatatgggta
attatagtaaattaatattgtatgtagtcagagtcaccataaacatcatc
ctagtagttgattagtaggaataatagaaaaacaatagtgtaatagtagg
ctcttccctgtctctgtccctcacagaccccttctcctcctgttttagat
ttcctgaacggggttctttttttctttcaaattttgttcatgtattagag
tctattataaactacaactgtagtttaacatttttatctacccttttatg
tttttatgttcagtaaacaccaagttaaatgatgtctcactgacacagaa
ttagaaaattggagtactgaaatttgtcagtttcagtagcacagatgtga
ggagctcagactagaacacagcacgtttcacagtccacggatgcaccaca
gccacagtcttacctgactgacgttgcgtctgtttgagatgccattatgg
tttctttgggcgcatgagaatagagtaaccctatgagcatgactgtaaca
ctcctggtt
gaattccattatgagaaccagagtagtcaaatacaccatctcctaattgt
ttgttacaatcttttgtggttcgcaattactgttcattagtgaatcgcta
ctgtttgtgtaaagagtgatgtgaatatagaaaaaaaataaaatatcaac
taacattcagtggataaacttgtgaagctattatagtgtttgtatagtgg
gaggaaggaagaaacagcattcagtgctgatacactgtgggcatggcgac
atatactcaggagacggagacaggaagactatttgaccttaggagtttga
aaaaggaggtagaaccatttgtcagtgagacctcattaaaaaaaaataga
atgcgaattgatccattcttatctccttgtacaaagcacaagtctaagtg
gatcaaggacctccacataaaaccagatgtactgaatctaacagaaaaga
aagtggggtaataaccttgaacgcattggcacagggaaaatttcctaaag
agaacaccattggctcaggctctaagatcaacaattgacaaatgggacct
catgaaacctaaaagcttctgtaaggcaaaggacactatcaatagaacaa
ataggcagtctacagactgtgaaaagatctttactaaccctatatccaat
agaggtctaatatccaaaagtaatccagaaaaccaaataacccaattgaa
aaaatggggtacagagctaaacagagacttctcaactaaggaatcttgaa
tggtcaagaagcacataaagaaatattcaacatccttagtcatcaggaaa
atgcaaattaaaatgaccctgtgattccacctcacatcagtcagaatggc
taagatcaaagtctcagtgacagcagatgctggcgaggatgtggagaaaa
gaggaacattcttccatttctggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_121622289_121623540
seq2: B6Ng01-115K10.b_45_1253

seq1  GAATTCCATCAAAATAGTTCAAATAATAATGTTTTAATAAAAAATATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCAAAATAGTTCAAATAATAATGTTTTAATAAAAAATATTCT  50

seq1  AGATAATAAAAGCAGTTAAGAATATGGCTAAGAGAAGGCTAGAGACTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATAAAAGCAGTTAAGAATATGGCTAAGAGAAGGCTAGAGACTTGC  100

seq1  AACAGTAGAAAGCACCTTACCTGTGACTTGAAGAACAGGCGTTTTCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAGAAAGCACCTTACCTGTGACTTGAAGAACAGGCGTTTTCAAAG  150

seq1  TTCAGTCATCACCGAAGCTGATGAATCCTCTGAAAACTTGCAGTCTGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCATCACCGAAGCTGATGAATCCTCTGAAAACTTGCAGTCTGGAG  200

seq1  GACCAAATCGTTGCTGGAGGAGTGGTATGCAGATCCAGGGAAGCAGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAATCGTTGCTGGAGGAGTGGTATGCAGATCCAGGGAAGCAGAATA  250

seq1  GAGGAATTAACCTGTTTTACCTTTGAATACACTCTAGTTTCCTGCTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATTAACCTGTTTTACCTTTGAATACACTCTAGTTTCCTGCTGTTG  300

seq1  ACTCCTGCTGTGTAAGTTAAGTGTAAGCAGAAACCAGCTGCACACAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGCTGTGTAAGTTAAGTGTAAGCAGAAACCAGCTGCACACAGTTT  350

seq1  AGCTGACACAGAGTATAGGGCTTAACTCCCTTATGTTTCAAAGGAGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACACAGAGTATAGGGCTTAACTCCCTTATGTTTCAAAGGAGAACA  400

seq1  AAAAATGGGCCTAGGAGGCTAAAGCAGAGATGTCCTCTATACCACTGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGGCCTAGGAGGCTAAAGCAGAGATGTCCTCTATACCACTGCAT  450

seq1  GCCTCCTCTTCTCATACACGAAGCCAGGCTCGTATGTCAAGTTGCTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTCTTCTCATACACGAAGCCAGGCTCGTATGTCAAGTTGCTGTGC  500

seq1  TTTTTACATGCTTTGCTAAGCAGTGGGCACGTTGTTAGCACACAGCAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACATGCTTTGCTAAGCAGTGGGCACGTTGTTAGCACACAGCAGTA  550

seq1  AACTGTTAAGTATAAGATGGTATTTCCTAATGGCTAACAATTCCTAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTAAGTATAAGATGGTATTTCCTAATGGCTAACAATTCCTAAAGC  600

seq1  ACTAGAATTAAATCTAAAGTATGGCTAGTCATATGATTTTGTGATGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAATTAAATCTAAAGTATGGCTAGTCATATGATTTTGTGATGTGTA  650

seq1  CTTCTTCATATGTGAAATGGAGAAGGCCCAGAATTACAGGAATATGGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCATATGTGAAATGGAGAAGGCCCAGAATTACAGGAATATGGGTA  700

seq1  ATTATAGTAAATTAATATTGTATGTAGTCAGAGTCACCATAAACATCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGTAAATTAATATTGTATGTAGTCAGAGTCACCATAAACATCATC  750

seq1  CTAGTAGTTGATTAGTAGGAATAATAGAAAAACAATAGTGTAATAGTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAGTTGATTAGTAGGAATAATAGAAAAACAATAGTGTAATAGTAGG  800

seq1  CTCTTCCCTGTCTCTGTCCCTCACAGACCCCTTCTCCTCCTGTTTTAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCTGTCTCTGTCCCTCACAGACCCCTTCTCCTCCTGTTTTAGAT  850

seq1  TTCCTGAACGGGGTTCTTTTTTTCTTTCAAATTTTGTTCATGTATTAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAACGGGGTTCTTTTTTTCTTTCAAATTTTGTTCATGTATTAGAG  900

seq1  TCTATTATAAACTACAACTGTAGTTTAACATTTTTATCTACCCTTTTATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTATAAACTACAACTGTAGTTTAACATTTTTATCTACCCTTTTATG  950

seq1  TTTTTATGTTCAGTAAACACCAAGTTAAATGATGGTCTCCACTGGACACA  1000
      ||||||||||||||||||||||||||||||||| |||| |||| ||||||
seq2  TTTTTATGTTCAGTAAACACCAAGTTAAATGAT-GTCT-CACT-GACACA  997

seq1  GAATTAGAAAAATTGGAAGTACTGAAATTTGTTCAGTTTCAGTAGCACAG  1050
      ||||||| |||||||| |||||||||||||| ||||||||||||||||||
seq2  GAATTAG-AAAATTGG-AGTACTGAAATTTG-TCAGTTTCAGTAGCACAG  1044

seq1  ATGTGAAGAAGCTCAAGAACTAAGAACACAGCACGTTTCACAGTTCACAC  1100
      ||||| || ||||||   ||| |||||||||||||||||||||| |||  
seq2  ATGTG-AGGAGCTCA--GACT-AGAACACAGCACGTTTCACAGTCCAC--  1088

seq1  GGGAATGCACCACAGCACACAGTCTTTTAACTTTGACATGAGTGTTGCAG  1150
        | |||||||||||| |||||||||   ||  |||| |||  |||||  
seq2  --GGATGCACCACAGC-CACAGTCTT---AC-CTGAC-TGA-CGTTGC--  1127

seq1  TTCTGTTTTTGAGGATGCATATATGTTTTTCTTTTGGGCCGCATAGAGAA  1200
       ||||  ||||| |||||   ||||  |||||||  || ||||| |||  
seq2  GTCTG--TTTGA-GATGCCATTATG-GTTTCTTT--GGGCGCAT-GAG--  1168

seq1  AAATGAAGTAAAACCTCATTGACGTAATTGAACTTGATAACATCTCCTGG  1250
       |||  |||  ||||  ||   | | | ||       ||||| |||||||
seq2  -AATAGAGT--AACCCTATGAGCATGACTG-------TAACA-CTCCTGG  1207

seq1  TT  1252
      ||
seq2  TT  1209

seq1: chr7_121742406_121742971
seq2: B6Ng01-115K10.g_69_634 (reverse)

seq1  GCTTTTAGGTTTCATGAGGTCCCATTTGTCAATTGTTGATCTTAGAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAGGTTTCATGAGGTCCCATTTGTCAATTGTTGATCTTAGAGCCT  50

seq1  GAGCCAATGGTGTTCTCTTTAGGAAATTTTCCCTGTGCCAATGCGTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAATGGTGTTCTCTTTAGGAAATTTTCCCTGTGCCAATGCGTTCAA  100

seq1  GGTTATTACCCCACTTTCTTTTCTGTTAGATTCAGTACATCTGGTTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTACCCCACTTTCTTTTCTGTTAGATTCAGTACATCTGGTTTTAT  150

seq1  GTGGAGGTCCTTGATCCACTTAGACTTGTGCTTTGTACAAGGAGATAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGTCCTTGATCCACTTAGACTTGTGCTTTGTACAAGGAGATAAGA  200

seq1  ATGGATCAATTCGCATTCTATTTTTTTTTAATGAGGTCTCACTGACAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCAATTCGCATTCTATTTTTTTTTAATGAGGTCTCACTGACAAAT  250

seq1  GGTTCTACCTCCTTTTTCAAACTCCTAAGGTCAAATAGTCTTCCTGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTACCTCCTTTTTCAAACTCCTAAGGTCAAATAGTCTTCCTGTCTC  300

seq1  CGTCTCCTGAGTATATGTCGCCATGCCCACAGTGTATCAGCACTGAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCCTGAGTATATGTCGCCATGCCCACAGTGTATCAGCACTGAATGC  350

seq1  TGTTTCTTCCTTCCTCCCACTATACAAACACTATAATAGCTTCACAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTCCTTCCTCCCACTATACAAACACTATAATAGCTTCACAAGTT  400

seq1  TATCCACTGAATGTTAGTTGATATTTTATTTTTTTTCTATATTCACATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACTGAATGTTAGTTGATATTTTATTTTTTTTCTATATTCACATCA  450

seq1  CTCTTTACACAAACAGTAGCGATTCACTAATGAACAGTAATTGCGAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTACACAAACAGTAGCGATTCACTAATGAACAGTAATTGCGAACCA  500

seq1  CAAAAGATTGTAACAAACAATTAGGAGATGGTGTATTTGACTACTCTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGATTGTAACAAACAATTAGGAGATGGTGTATTTGACTACTCTGGT  550

seq1  TCTCATAATGGAATTC  566
      ||||||||||||||||
seq2  TCTCATAATGGAATTC  566