BAC Information

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BAC

Clone NameB6Ng01-116E17
Chromosome7 (Build37)
Map Location 49,324,826 - 49,325,900
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668555, EG627987, LOC100039269, LOC545955, EG628304, LOC668561, EG434172, LOC100039221, LOC668565, AI987944, EG269902, LOC100039375, EG628359, 2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913
Downstream geneEG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116E17.bB6Ng01-116E17.g
ACCDH921327DH921328
length1,1591,122
definitionDH921327|Mus musculus domesticus DNA, BAC clone: B6Ng01-116E17, 5' end.DH921328|Mus musculus domesticus DNA, BAC clone: B6Ng01-116E17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttggtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgacttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgataaaactctgcactaaacctctctg
gtcctgggctttttttggctgggagactattaataattgcttctatttct
ttaggtgatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatttgtccagaattttgtccatttcgtccaggttttcca
gttttgttgagtataaccttttgtggaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggatttttgtccctgtgccctttagtgagtctagctaagggtttatct
atcttgttgtttttctcaaagaaccaactcctcgtttggttaaatctttg
aatagttcttcttgtttccccttggttgatttcacctctgagtttgatta
ttttcctgccgtctactcctcttgggtgaatttgcttccttttttctaga
gcttttagatgtgttgtcaagctgctagtatgtgctctctcccgtttctt
cttggaagcactcagagctatgagtttccctcttagaatgcttttcattg
tgtcccaaggtttgggtacgtgtgggcttcatttcattaaactctaaaaa
gtctttaatttctttctttatccttctttgaccaggtatcatgagaaaga
gggttgtcagttctcttggtgaatggggaaagtgtgccttctcatattta
gtgtggtta
gaattcatcatggaattaaatcttaggcatctccatgagtagttttatac
aggcacctacctgagaaaaggaaaaataaaaacacagaatgtgggtaagt
aattcacaggctactatcactcacagaatgagaaggtgataggagtgagc
aaccactttttgatttctaacttcactctaattctcatttatggacataa
tgtcatcacctcttctggcttttaaaacatccttttcccacaatatgatg
agtgctcacacagtcagtcaaaacaacctttctccccacagtttcttttg
ttgacaatttacatgaagtaggaagtcaaacattacacacacacacacac
acacacacacacacacacacacacacacacacacacttcataccattatt
ccctttcagaagctggaaaagtaaaatgcaactttaccttactgtaattt
cttcatttaggtgacaaaatgaacctagcattgttctgaggcagtaaata
ttagatactctattcttaagacatatatgggcattgaaaaaattgaaaat
aaacatatcgattgatcagcatcaaggaataaatagtagtctatgttatc
tgttgttatgtgaagatccatattggtagtacaatgtttactggtgtttt
aatgaaagttcaatgattatgacatcctgagaattacattcagttttttt
gttttgttttgttttatgagggaagctgacttggttttatttgttcttta
attttacacatgtcatggtctcctttgtctgggaagaactcaggaagaac
caacaacaccatgaatagagctagcttctctgtccatttcaatgaaaata
tttttttagttcatatttcttatttatattaaatacttatcccctttcct
agttccctcttaaaacctggtatcccttcccattccctctaaccaaccac
ccactctcattctgccctggcattcccccactctggggcatagaagcttc
atagcagggcatcttctcccattgatgaatgacaattctttcttatcttt
ctctagctctcatggggacccgtggaatcaatacaatagaatgctctgca
aaatgcagctagaacatgagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_49324826_49325900
seq2: B6Ng01-116E17.g_134_1189 (reverse)

seq1  GACTCATGGCTCTAGCTGCATATCTGGCAGAGGCCATCTATTGTATGGAT  50
      ||||||| | |||||||||  || | ||||| ||  |||||||||| |||
seq2  GACTCAT-GTTCTAGCTGC--ATTTTGCAGA-GCATTCTATTGTATTGAT  46

seq1  CACA-GGGTCCCCAATGAAGGAGCTAGAGAAAGATAAAGAAAGAATTGTC  99
        || |||||||| ||||  ||||||||||||||| ||||||||||||||
seq2  TCCACGGGTCCCC-ATGA--GAGCTAGAGAAAGAT-AAGAAAGAATTGTC  92

seq1  ATTCATCAATGGGAGAAGATGCCCTTGGCTTATGAAGGCTCTATGCCCCA  149
      |||||||||||||||||||||||||  || |||||||  |||||||||||
seq2  ATTCATCAATGGGAGAAGATGCCCT--GC-TATGAAGCTTCTATGCCCCA  139

seq1  GAGTGGGGGAATGCCAGGGCCAGGAATGAGAGTGGGTGGGTTGGTTAGAG  199
      ||||||||||||||||||||   |||||||||||||| ||||||||||||
seq2  GAGTGGGGGAATGCCAGGGC--AGAATGAGAGTGGGT-GGTTGGTTAGAG  186

seq1  GGGAAATGGGAAGGGGATACCAGGTTTTAAGAGGGGAAACTAGGAAAGGG  249
      ||  |||||||| ||||||||||||||||||||||  |||||||||||||
seq2  GG--AATGGGAA-GGGATACCAGGTTTTAAGAGGG--AACTAGGAAAGGG  231

seq1  GATAAAGTATTTAATATAAATAAAGAAAATATGAACTAAAAAAATATTTT  299
      ||| |||||||||||||||||||   ||||||||||||||||||||||||
seq2  GAT-AAGTATTTAATATAAATAA--GAAATATGAACTAAAAAAATATTTT  278

seq1  CATTGAAATGGACAGAGAAGCTAGCTCTATTCATGGTGTTGTTGGTTCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAATGGACAGAGAAGCTAGCTCTATTCATGGTGTTGTTGGTTCTT  328

seq1  CCTGAGTTCTTCCCAGACAAAGGAGACCATGACATGTGTAAATTGAAAGA  399
      |||||||||||||||||||||||||||||||||||||||||| | |||||
seq2  CCTGAGTTCTTCCCAGACAAAGGAGACCATGACATGTGTAAAATTAAAGA  378

seq1  ACAAAT-AAACCAAGTCAGCTTCCCTCATAAAACAAAACAAAACAAAAAA  448
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAAACCAAGTCAGCTTCCCTCATAAAACAAAACAAAACAAAAAA  428

seq1  ACTGAATGTAATTCTCAGGATGTCATAATCATTGAACTTTCATT-AAACA  497
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACTGAATGTAATTCTCAGGATGTCATAATCATTGAACTTTCATTAAAACA  478

seq1  CCAGTAAACATTGTACTACCAATATGGATCTTCACATAACAACAGATAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAAACATTGTACTACCAATATGGATCTTCACATAACAACAGATAAC  528

seq1  ATAGACTACTATTTATTCCTTGATGCTGATCAATCGATATGTTTATTTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTACTATTTATTCCTTGATGCTGATCAATCGATATGTTTATTTTC  578

seq1  AATTTTTTCAATGCCCATATATGTCTTAAGAATAGAGTATCTAATATTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTCAATGCCCATATATGTCTTAAGAATAGAGTATCTAATATTTA  628

seq1  CTGCCTCAGAACAATGCTAGGTTCATTTTGTCACCTAAATGAAGAAATTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCAGAACAATGCTAGGTTCATTTTGTCACCTAAATGAAGAAATTA  678

seq1  CAGTAAGGTAAAGTTGCATTTTACTTTTCCAGCTTCTGAAAGGGAATAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGGTAAAGTTGCATTTTACTTTTCCAGCTTCTGAAAGGGAATAAT  728

seq1  GGTATGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  778

seq1  GTGTGTGTGTAATGTTTGACTTCCTACTTCATGTAAATTGTCAACAAAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTAATGTTTGACTTCCTACTTCATGTAAATTGTCAACAAAAG  828

seq1  AAACTGTGGGGAGAAAGGTTGTTTTGACTGACTGTGTGAGCACTCATCAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGGGGAGAAAGGTTGTTTTGACTGACTGTGTGAGCACTCATCAT  878

seq1  ATTGTGGGAAAAGGATGTTTTAAAAGCCAGAAGAGGTGATGACATTATGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGGAAAAGGATGTTTTAAAAGCCAGAAGAGGTGATGACATTATGT  928

seq1  CCATAAATGAGAATTAGAGTGAAGTTAGAAATCAAAAAGTGGTTGCTCAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAATGAGAATTAGAGTGAAGTTAGAAATCAAAAAGTGGTTGCTCAC  978

seq1  TCCTATCACCTTCTCATTCTGTGAGTGATAGTAGCCTGTGAATTACTTAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATCACCTTCTCATTCTGTGAGTGATAGTAGCCTGTGAATTACTTAC  1028

seq1  CCACATTCTGTGTTTTTATTTTTCCTTT  1075
      ||||||||||||||||||||||||||||
seq2  CCACATTCTGTGTTTTTATTTTTCCTTT  1056