BAC Information

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BAC

Clone NameB6Ng01-116F11
Chromosome7 (Build37)3 (Build37)
Map Location 73,831,870 - 73,832,28945,249,618 - 45,250,788
singlet/doubletsingletsinglet
Overlap geneAsb7
Upstream geneTarsl2, Tm2d3, LOC665241, Pcsk6, Snrpa1, H47, Chsy1, Lrrk1, Aldh1a3
Downstream geneLins2, Lass3, Adamts17, Lysmd4, Mef2a, EG665304, Lrrc28, Ttc23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116F11.bB6Ng01-116F11.g
ACCDH921363DH921364
length8101,147
definitionDH921363|Mus musculus domesticus DNA, BAC clone: B6Ng01-116F11, 5' end.DH921364|Mus musculus domesticus DNA, BAC clone: B6Ng01-116F11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(73,831,870 - 73,832,289)(45,249,618 - 45,250,788)
sequence
gaattcatttgtgcttctgcccaactgtttccaggatacaccatttcctg
gtagttatctactgcttctgactctaaaactcttgttggccttccctaag
actttggagaagggaatgtggtaaatatctccatttagggcagaatactc
tgcaggatattttttctctatactttggccagctgggagtttttgtatga
ataaccatctgcagcaaatagaatcttttctaatggtgattgagagattc
attgatgtgtgtgtatgcaataaatcatcagcagtcattttaataatatg
cctatttcgcagaaatattagggtattccattggaaaaataacggtctag
tcataggtccttggcccaataatagtagtagacaaggattccaacttgtg
aagaaagacataagtataatcagaaaatggtccgatattcccatgacatt
catgccagtattcaacaagagtacatgtcttgtcattatggtcattcagt
gttcacctctcagtataattaatgattccttttcttcttcagtaccttgc
atagcaccacaaaatctaaccaggaaggataaagcctctgggccagcacc
agtttgttttcatcatacccaagtatgtgatgtgttcatccctagtattt
caatgtcacattccgcatagtaaccaagagcatagtcaataatctgtaat
gttgacattggacctcactgccaacaactcacaaaacagtaacccattcc
tataactgtggcttttgttttttatatatatatgtgtgtgtgtgtgtgtg
tgtgtgtgtg
gaattcatttgcaatacatgaaaatggaaagtttttgtcatgtattactc
aggaatctttcactagcatgaaaaaaataacagaacacatagcttcagag
atttgaagatgtacgtagccaactgatttagtgtatttaagaatgcagag
gacaagcttacttccttagttccatggctaatctatgcatccatgttttt
aattacatttcttctcactagccccttggcaccttgcttcctcaatttgc
cctttgtctctttcatcctttccaaggctcatgtttcctcagagcataat
tgtattcaatatatcctaagtaaaaaacttattcctccgtattatcaagg
ttcactatctttggagtcctcccacttgacataatgtgtctcaactcaag
ctcttgggtgtcttttcatttataacttttatctcaacccaaatctcaag
gtatctgaaaattaaaaactgtaacttgggttcttcctcatcatctcctg
cttgcttgggagtcttcggcaccacataagtgtttttatagtcacataga
cttagcaaactcataaatcaagttcttagagccaatgttaggggctctga
ggcttcacttccacctcaaatgacatagcgtctccactgcatggcaagca
tgattttcatgagctggaataactccctgcatgaaaataacatactttct
ttaaattggcaacacaaagccccttcttgggcagagcatggcatactgtc
cttcttttttcatttcctttccgcatagcatcaaatgatattttgaaaca
tcttcactttcagaaactagttgagtgccactgtcttgatggattaaatc
ccaactctccctgttcagctttacctctgagttcttctgcttccctttta
tgtcaaaaattattagacttggaaccgtggagtttttcctcaacccaccc
atgaatctcatattatttcatatggatatcttctggcagcttacatctgg
agagtggtattttcttcacttttccatggctcatttgctggtcttatgct
ctaagatgattcacaaatattgatatttatgtgttgtatctggagcctct
gaacctattcatcatccatggatgaggaagacaatgctgcatttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_73831870_73832289
seq2: B6Ng01-116F11.b_572_855 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACGCACATATATA  50
                    ||||||||||||||||||||||||| || |||||||
seq2  --------------CACACACACACACACACACACACACACATATATATA  36

seq1  TGAATGCTACCCTAAATTTTTACACACACACATATATGAATACTACCCTA  100
      | ||         |||     | |  ||||  |||| ||||         
seq2  TAAA---------AAA---CAAAAGCCACAGTTATAGGAAT---------  65

seq1  AATTTTCTCCATAGTACAGTCACTGGTGAATTTTTTTTTCTCTTTCTTTC  150
                        || ||||        |||| |   ||  |  |
seq2  ----------------GGGTTACTG--------TTTTGTGAGTTGTTGGC  91

seq1  ATTTGGTTCTTTAAAACCCTGTTTCACTCTATAGCTGGCCCAGGTTGGCT  200
      | |  | |         ||  | |||  |  ||       ||| ||    
seq2  AGTGAGGT---------CCAATGTCA-ACATTA-------CAGATT----  120

seq1  TTAAATTCTCCATCCTCCTGCCTCAAGATTCCCACTCCTCAGCCTGGAAA  250
          |||  | || ||| ||  | |  || |  | |  | | | | ||||
seq2  ----ATTGACTATGCTCTTG-GTTACTATGCGGAAT-GTGA-CATTGAAA  163

seq1  GAACAGCAAT-TACA-GTCAGGTACAAGCCTTTGATCCCAGCACTCAGGA  298
       |  ||  ||  |||  |||  |||  |  | ||||   | ||  | || 
seq2  TACTAGGGATGAACACATCACATACTTGGGTATGATGAAAACAAACTGGT  213

seq1  GGCAGAGTCAGGCAGATCTGAGTTCAAGGC--TATCCTGATCTACAGG--  344
      |       | |||  |          ||||  ||||||    | | ||  
seq2  G-------CTGGCCCA---------GAGGCTTTATCCT----TCCTGGTT  243

seq1  -GAGTTTCTGGACAGCCAAAGCTACACAGAGAAGCCCTGTCTCAAAGCAC  393
       || ||| |||         ||||             ||   ||| | ||
seq2  AGATTTTGTGG--------TGCTA-------------TG---CAAGGTAC  269

seq1  CAGAAATTAAAAAGAAGAAGAAAAGGA  420
                   ||||||||||||||
seq2  ------------TGAAGAAGAAAAGGA  284

seq1: chr3_45249618_45250788
seq2: B6Ng01-116F11.g_69_1215

seq1  GAATTCATTTGCAATACATGAAAATGGAAAGTTTTTGTCATGTATTACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGCAATACATGAAAATGGAAAGTTTTTGTCATGTATTACTC  50

seq1  AGGAATCTTTCACTAGCATGAAAAAAATAACAGAACACATAGCTTCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTTTCACTAGCATGAAAAAAATAACAGAACACATAGCTTCAGAG  100

seq1  ATTTGAAGATGTACGTAGCCAACTGATTTAGTGTATTTAAGAATGCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGATGTACGTAGCCAACTGATTTAGTGTATTTAAGAATGCAGAG  150

seq1  GACAAGCTTACTTCCTTAGTTCCATGGCTAATCTATGCATCCATGTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGCTTACTTCCTTAGTTCCATGGCTAATCTATGCATCCATGTTTTT  200

seq1  AATTACATTTCTTCTCACTAGCCCCTTGGCACCTTGCTTCCTCAATTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATTTCTTCTCACTAGCCCCTTGGCACCTTGCTTCCTCAATTTGC  250

seq1  CCTTTGTCTCTTTCATCCTTTCCAAGGCTCATGTTTCCTCAGAGCATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTCTCTTTCATCCTTTCCAAGGCTCATGTTTCCTCAGAGCATAAT  300

seq1  TGTATTCAATATATCCTAAGTAAAAAACTTATTCCTCCGTATTATCAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCAATATATCCTAAGTAAAAAACTTATTCCTCCGTATTATCAAGG  350

seq1  TTCACTATCTTTGGAGTCCTCCCACTTGACATAATGTGTCTCAACTCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTATCTTTGGAGTCCTCCCACTTGACATAATGTGTCTCAACTCAAG  400

seq1  CTCTTGGGTGTCTTTTCATTTATAACTTTTATCTCAACCCAAATCTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGGTGTCTTTTCATTTATAACTTTTATCTCAACCCAAATCTCAAG  450

seq1  GTATCTGAAAATTAAAAACTGTAACTTGGGTTCTTCCTCATCATCTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGAAAATTAAAAACTGTAACTTGGGTTCTTCCTCATCATCTCCTG  500

seq1  CTTGCTTGGGAGTCTTCGGCACCACATAAGTGTTTTTATAGTCACATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTGGGAGTCTTCGGCACCACATAAGTGTTTTTATAGTCACATAGA  550

seq1  CTTAGCAAACTCATAAATCAAGTTCTTAGAGCCAATGTTAGGGGCTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAAACTCATAAATCAAGTTCTTAGAGCCAATGTTAGGGGCTCTGA  600

seq1  GGCTTCACTTCCACCTCAAATGACATAGCGTCTCCACTGCATGGCAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCACTTCCACCTCAAATGACATAGCGTCTCCACTGCATGGCAAGCA  650

seq1  TGATTTTCATGAGCTGGAATAACTCCCTGCATGAAAATAACATACTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTCATGAGCTGGAATAACTCCCTGCATGAAAATAACATACTTTCT  700

seq1  TTAAATTGGCAACACAAAGCCCCTTCTTGGGCAGAGCATGGCATACTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTGGCAACACAAAGCCCCTTCTTGGGCAGAGCATGGCATACTGTC  750

seq1  CTTCTTTTTTCATTTCCTTTCCGCATAGCATCAAATGATATTTTGAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTTTCATTTCCTTTCCGCATAGCATCAAATGATATTTTGAAACA  800

seq1  TCTTCACTTTCAGAAACTAGTTGAGTGCCACTGTCTTGATGGATTAAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTTTCAGAAACTAGTTGAGTGCCACTGTCTTGATGGATTAAATC  850

seq1  CCAACTCTCCCTGTTCAGCTTTACCTCTGAGTTCTTCTGCTTCCCTTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCTCCCTGTTCAGCTTTACCTCTGAGTTCTTCTGCTTCCCTTTTA  900

seq1  TGTCAAAAATTATTAGACTTGGAACCGTGGAGTTTTTCCTCAACCCAACC  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTCAAAAATTATTAGACTTGGAACCGTGGAGTTTTTCCTCAACCC-ACC  949

seq1  CATGAATCTCATATTATTTCATATGGAATATCTTCTGGCAGCTTTACATC  1000
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  CATGAATCTCATATTATTTCATATGG-ATATCTTCTGGCAGC-TTACATC  997

seq1  TGGAGAAGTGGTATTTTCCTTCACTTTTCCATGGCTCATGTGCTGGTTCT  1050
      ||||| ||||||||||| ||||||||||||||||||||| |||||||   
seq2  TGGAG-AGTGGTATTTT-CTTCACTTTTCCATGGCTCATTTGCTGGT--C  1043

seq1  TTATGCTTCTAAAGATGAATTCACAAATAATTTGATATTTATGGTGTTTG  1100
      |||||| ||| |||||| |||||||||||  ||||||||||| |||||  
seq2  TTATGC-TCT-AAGATG-ATTCACAAATA--TTGATATTTAT-GTGTT--  1085

seq1  TTATCTGGAGCCATCTTGAAACCTAATCCATCATTCATAGTGATGAGGAA  1150
       ||||||||||| |||   ||||| || |||||| |||   |||||||||
seq2  GTATCTGGAGCC-TCT--GAACCT-ATTCATCATCCAT--GGATGAGGAA  1129

seq1  GACGAAATGGTTGCATTTGTT  1171
      |||  ||| | ||||||||||
seq2  GAC--AAT-GCTGCATTTGTT  1147