BAC Information

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BAC

Clone NameB6Ng01-116G17
Chromosome7 (Build37)
Map Location 18,944,439 - 18,945,529
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18
Downstream geneLOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116G17.bB6Ng01-116G17.g
ACCDH921422DH921423
length1,1811,080
definitionDH921422|Mus musculus domesticus DNA, BAC clone: B6Ng01-116G17, 5' end.DH921423|Mus musculus domesticus DNA, BAC clone: B6Ng01-116G17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaacactgagat
tccacttcattccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttgctca
gaaaattggacatagtactactggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcacctattaaaaaaatgaatttatgaaattcctaggcaaa
ttgttggacctggtgggtatcatcctgagtgaagtaacccaatcacaaag
gaactcacacaatatgtactcactgataagtcgatattagcccagaaact
caggatacccaagatataagatacaacttgccaaacgcatgaaattcaag
aacgaagaccaaagtgtggacactctaccctttcttagaaatgggaacaa
aacacccatagaaggagttacagagacaaaatttggagctgtgacaaaag
gatggaccatctagtgattgccatatgcagggatcctcccataatcagct
tccaaatgctgacaccattgcatacactagcaagattttgctgaaaggac
ccagatatagctctatcttgtgagactatgccggggcctagcaaacacag
aagtggatgatcacagtcagctattggatgggtcacatggccccttatgg
aggagctagagaaattacccaaggagctaaagggaactgcaccctatagg
tggaacaacatatgaactaaccattacccggggctcttgtcttagctgca
tagtatcaaaagaatggcctagtcggtcatcactgcaagaagagtccatt
ggacttgcaaacttataatgcctcagtacagggaacatccagggcctaaa
tggccaatggggtggggtagggtaattgtgt
gaattcagctctacccaggctagaccatcataacatgtgccaaccttccc
aggagttccatggtgactggtgtgaggcacaggaccacaaaagacaaaga
atgagcctcagaagaatggagggtatgagagtcaggcaggcaggcttgag
agaaaaccactttcttccttcacatggaatgccctatactccacaggtaa
ggaccatgtagatataatttgtgatatagaggtgactggtggctttattc
taatattttatgtatattgttatatcagcagcatgcatatctgtgcatgc
cagcatgccttgtaccaacacaggtcagaaaggggcattggatcctctga
aactggagtgacaaacagttataagcagccatggatgtgctaggaactga
tcttagctcctctataagaaattccacttctcttaaccacagagaaatct
ttccagccctccaggatgagtgtttacagaaatagatctgactgacaaaa
gttagagagcaagcatgtgctggaactatggctctcaggacacgtgtgtt
ttgcatatattcggtagggatttgagatgctaactttctcaacatgagag
tattgttactaaaactttatcctttcaatgatgatgtccttaaagagcac
aatcaggtgatgagagggagatggtaaagttgtgtgaaatcaatgactcc
ttagccaagggagcgctgtgttagatgccggatcaaatgggaggctaaag
aaaaactcctggtgtttccagaactacgcaggaagtagtctgcacaggtg
agagtgtggactacagatgctaacagcttctggaaaaagcagagccacag
agcttccgaggcagcgccattttcgggctccagacatctggccaccttgc
cgccagaggacaggtgtctgcctggcccgggaggctttcgcctcagatcc
gctgaagccaccttggttccgggactcacagaagtcgactgcactagtca
gaagtgtgactactaaaacacgcttctgtgaatgatcaagcacacagctt
ctgggaaaggactgttttggccttctcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_18944439_18945529
seq2: B6Ng01-116G17.g_69_1148

seq1  GAATTCAGCTCTACCCAGGCTAGACCATCATAACATGTGCCAACCTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCTACCCAGGCTAGACCATCATAACATGTGCCAACCTTCCC  50

seq1  AGGAGTTCCATGGTGACTGGTGTGAGGCACAGGACCACAAAAGACAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTCCATGGTGACTGGTGTGAGGCACAGGACCACAAAAGACAAAGA  100

seq1  ATGAGCCTCAGAAGAATGGAGGGTATGAGAGTCAGGCAGGCAGGCTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCTCAGAAGAATGGAGGGTATGAGAGTCAGGCAGGCAGGCTTGAG  150

seq1  AGAAAACCACTTTCTTCCTTCACATGGAATGCCCTATACTCCACAGGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCACTTTCTTCCTTCACATGGAATGCCCTATACTCCACAGGTAA  200

seq1  GGACCATGTAGATATAATTTGTGATATAGAGGTGACTGGTGGCTTTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATGTAGATATAATTTGTGATATAGAGGTGACTGGTGGCTTTATTC  250

seq1  TAATATTTTATGTATATTGTTATATCAGCAGCATGCATATCTGTGCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTTATGTATATTGTTATATCAGCAGCATGCATATCTGTGCATGC  300

seq1  CAGCATGCCTTGTACCAACACAGGTCAGAAAGGGGCATTGGATCCTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGCCTTGTACCAACACAGGTCAGAAAGGGGCATTGGATCCTCTGA  350

seq1  AACTGGAGTGACAAACAGTTATAAGCAGCCATGGATGTGCTAGGAACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAGTGACAAACAGTTATAAGCAGCCATGGATGTGCTAGGAACTGA  400

seq1  TCTTAGCTCCTCTATAAGAAATTCCACTTCTCTTAACCACAGAGAAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCTCCTCTATAAGAAATTCCACTTCTCTTAACCACAGAGAAATCT  450

seq1  TTCCAGCCCTCCAGGATGAGTGTTTACAGAAATAGATCTGACTGACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCCCTCCAGGATGAGTGTTTACAGAAATAGATCTGACTGACAAAA  500

seq1  GTTAGAGAGCAAGCATGTGCTGGAACTATGGCTCTCAGGACACGTGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGAGCAAGCATGTGCTGGAACTATGGCTCTCAGGACACGTGTGTT  550

seq1  TTGCATATATTCGGTAGGGATTTGAGATGCTAACTTTCTCAACATGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATATATTCGGTAGGGATTTGAGATGCTAACTTTCTCAACATGAGAG  600

seq1  TATTGTTACTAAAACTTTATCCTTTCAATGATGATGTCCTTAAAGAGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTACTAAAACTTTATCCTTTCAATGATGATGTCCTTAAAGAGCAC  650

seq1  AATCAGGTGATGAGAGGGAGATGGTAAAGTTGTGTGAAATCAATGACTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGTGATGAGAGGGAGATGGTAAAGTTGTGTGAAATCAATGACTCC  700

seq1  TTAGCCAAGGGAGCGCTGTGTTAGATGCCGGATCAAATGGGAGGCTAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCAAGGGAGCGCTGTGTTAGATGCCGGATCAAATGGGAGGCTAAAG  750

seq1  AAAAAC-CCTGGTGTTTCCAGAACTACGCAGGAAGTAGTCTGCACAGGTG  799
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTCCTGGTGTTTCCAGAACTACGCAGGAAGTAGTCTGCACAGGTG  800

seq1  AGAGTGTGGACTACAGATGCTAACAGCTTCTGGAAAAAGCAAGAGCCACA  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGAGTGTGGACTACAGATGCTAACAGCTTCTGGAAAAAGC-AGAGCCACA  849

seq1  GAGCTTCCGAGGCAGCGCCATTTTCGGGCTCCAGACATCTGGCCACCTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCCGAGGCAGCGCCATTTTCGGGCTCCAGACATCTGGCCACCTTG  899

seq1  CCGGCCAGAGGACAGGTGTCTGCCTGGCCCGGGAGGCTTTCGCCTCAGGA  949
      || |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CC-GCCAGAGGACAGGTGTCTGCCTGGCCCGGGAGGCTTTCGCCTCA-GA  947

seq1  TCCGCTGAAGCCACCTTGGTTCCGGGACTCCACAGAAAGTCGACTGCACA  999
      ||||||||||||||||||||||||||||| ||||| ||||||||||||| 
seq2  TCCGCTGAAGCCACCTTGGTTCCGGGACT-CACAG-AAGTCGACTGCACT  995

seq1  AGTCAG-AGTGTGGACTACTAAAACAACAGCTTCTGTGACAGGCCAAAGC  1048
      |||||| ||||| |||||||||||||   |||||||||| | |   ||||
seq2  AGTCAGAAGTGT-GACTACTAAAACA--CGCTTCTGTGA-ATGATCAAGC  1041

seq1  AACACAGCTTCTGGGAAAGGACCTGTTTTGGGCCTTCATCTTC  1091
       |||||||||||||||||||| ||||||| ||||||| |||||
seq2  -ACACAGCTTCTGGGAAAGGA-CTGTTTT-GGCCTTC-TCTTC  1080