BAC Information

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BAC

Clone NameB6Ng01-116J18
Chromosome7 (Build37)
Map Location 147,708,089 - 147,709,115
singlet/doubletsinglet
Overlap genenone
Upstream geneInpp5a, Nkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253, EG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536
Downstream geneOlfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116J18.bB6Ng01-116J18.g
ACCDH921565DH921566
length1,1421,020
definitionDH921565|Mus musculus domesticus DNA, BAC clone: B6Ng01-116J18, 5' end.DH921566|Mus musculus domesticus DNA, BAC clone: B6Ng01-116J18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgtaccccattttaaaataaggttatttgatt
ttctggagtccagcttcttgagttctttgtatatattggatattattagt
cccctattgagtttaggattggtaaaaatcctttcccaatctgttgatgg
cctttttgtcatattgacagtgtcttttgccttacagaagctttgcaatt
ttatgaggtcccatttgtcaattcttgcttttacagcacaagccattgct
gttctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccc
cactttctcctctataagtttcagtgtgtctggttttatgtggagttcct
taatcctcttagacttgagatttgtctagataacaatggatcaattcaca
ttcttctacatgctaaccaccagttgatccaggaccatttgttgaaaatg
ctgtctttttttcactgaatggttttagttcctttgtcaaagatcaagta
accataggtgtgtgggttcatttctgggtcttcaattttattccattgat
ctacctgtctgtcgctgtaccagtaccatgcagtttttatcacaattgct
ctgtagtacagcttgaggtcggggatggtgattccaccagaggttatttt
attgttgaaaatagtttttgctatcctaggtttttttgttatttcagttg
aatttgcaaattgccctttctaactctgtgaagaattgagttgggatttt
gatggggattgcattgaatctgtagattgctttcagcagtatagccattt
ttactatattaatcctgccaatccatgagcatgggagatcttttcatctt
ctgagatcttcttcatttctttcttcagagacttggagttcttatcaaac
agatctttcacttccttagtcacacccaggtatttttatattatttgtga
ccaatgtgaagggtgttgtttccctaatttctttctcgcctggttatcct
ttgtgagagaaagacgctgattggttgattaatttatatccagctactgc
cctgaagtggttaatcaggttagaagttcctcgtgatcttagggtcacta
tatatacttacatatatctctgacacatgggaatatttgaga
gaattctcatggataaatctttctcactaacagagaatcaacaagaatat
aaaccccacttactggtagaccccatgaccagcagtaaattgtgggaaac
atcaactcaatagtattttagtagactttatctctcatctatctttggtt
gactctactctgactggtcttttacttgcatattatggcttttggggttt
tatggatttgcgttggtttttctcaagacagagaggaagaaatgccatgg
agttgtatggataaggtggatctaggagaagttggaaaagggaaacagca
attagaatacattgtaaaaaaaatattgttcaattaaaagttttacttaa
attggttaatttggatttttataaatgattactgacacaaaaaatattaa
ttaacattatttttaaaacttgttaagattatactttcattttaaatttt
atactgtccccttccccctgggagccctaccatatgtccctacctgattc
ttctccaaatcaattacttctttttacttgttgtcattggaggcatatta
gtgtatgtatattcaagtatattcctaaatatagcctgttatgtctgtaa
aatgttatctgtatatatagtctcaggtccaaatgaatgttttttttcct
tttccattttttattaggtatttagctcatttacatttccaatgctatac
caaaagtcccccatagccacccacccccactcccctacccacccactccc
ctttttttggccctggcgttcccctgtactggggcatataaagtttgcgt
gttcaatgggcctttctttccagtgatggccgactaggccatcttttgat
acttatgcagctagaatcaaaactccggggtactggttagtcataaggtg
tccacctaaagggtggagatactttagctccttgggtatttctctactcc
tccatgggagccctgttaatcaatccattatctggactgtgactatcact
tctgtgtttgctaggccccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_147708089_147709115
seq2: B6Ng01-116J18.g_69_1088

seq1  GAATTCTCATGGATAAATCTTTCTCACTAACAGAGAATCAACAAGAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGGATAAATCTTTCTCACTAACAGAGAATCAACAAGAATAT  50

seq1  AAACCCCACTTACTGGTAGACCCCATGACCAGCAGTAAATTGTGGGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCACTTACTGGTAGACCCCATGACCAGCAGTAAATTGTGGGAAAC  100

seq1  ATCAACTCAATAGTATTTTAGTAGACTTTATCTCTCATCTATCTTTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTCAATAGTATTTTAGTAGACTTTATCTCTCATCTATCTTTGGTT  150

seq1  GACTCTACTCTGACTGGTCTTTTACTTGCATATTATGGCTTTTGGGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTACTCTGACTGGTCTTTTACTTGCATATTATGGCTTTTGGGGTTT  200

seq1  TATGGATTTGCGTTGGTTTTTCTCAAGACAGAGAGGAAGAAATGCCATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATTTGCGTTGGTTTTTCTCAAGACAGAGAGGAAGAAATGCCATGG  250

seq1  AGTTGTATGGATAAGGTGGATCTAGGAGAAGTTGGAAAAGGGAAACAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTATGGATAAGGTGGATCTAGGAGAAGTTGGAAAAGGGAAACAGCA  300

seq1  ATTAGAATACATTGTAAAAAAAATATTGTTCAATTAAAAGTTTTACTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATACATTGTAAAAAAAATATTGTTCAATTAAAAGTTTTACTTAA  350

seq1  ATTGGTTAATTTGGATTTTTATAAATGATTACTGACACAAAAAATATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTAATTTGGATTTTTATAAATGATTACTGACACAAAAAATATTAA  400

seq1  TTAACATTATTTTTAAAACTTGTTAAGATTATACTTTCATTTTAAATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTATTTTTAAAACTTGTTAAGATTATACTTTCATTTTAAATTTT  450

seq1  ATACTGTCCCCTTCCCCCTGGGAGCCCTACCATATGTCCCTACCTGATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTCCCCTTCCCCCTGGGAGCCCTACCATATGTCCCTACCTGATTC  500

seq1  TTCTCCAAATCAATTACTTCTTTTTACTTGTTGTCATTGGAGGCATATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAAATCAATTACTTCTTTTTACTTGTTGTCATTGGAGGCATATTA  550

seq1  GTGTATGTATATTCAAGTATATTCCTAAATATAGCCTGTTATGTCTGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTATATTCAAGTATATTCCTAAATATAGCCTGTTATGTCTGTAA  600

seq1  AATGTTATCTGTATATATAGTCTCAGGTCCAAATGAATGTTTTTTTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATCTGTATATATAGTCTCAGGTCCAAATGAATGTTTTTTTTCCT  650

seq1  TTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATAC  700

seq1  CAAAAGTCCCCCATAGCCACCCACCCCCACTCCCCTACCCACCCACTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTCCCCCATAGCCACCCACCCCCACTCCCCTACCCACCCACTCCC  750

seq1  C-TTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGT  799
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGT  800

seq1  GTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGAT  849
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTTCAATGGGCCTTTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGAT  850

seq1  ACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATG  899
      || |||||||||||| |||| | |||||||||||||||||| |||||| |
seq2  ACTTATGCAGCTAGAATCAA-AACTCCGGGGTACTGGTTAG-TCATAAGG  898

seq1  TTGTTCCACCTATAGGGTTGCAGATACCTTTAGCTCCTTGGGTACTTTCT  949
      |   |||||||| |||| || ||||| ||||||||||||||||| |||||
seq2  T--GTCCACCTAAAGGG-TGGAGATA-CTTTAGCTCCTTGGGTA-TTTCT  943

seq1  CTAGCTCCTCCATTGGGAGCCCTG-TGATCCATCCATTAGCT-GACTGTG  997
      ||| |||||||| ||||||||||| | ||| |||||||| || |||||||
seq2  CTA-CTCCTCCA-TGGGAGCCCTGTTAATCAATCCATTATCTGGACTGTG  991

seq1  AGCATCCACTTCTGTGTTTGCTAGGCCCCG  1027
      |  || ||||||||||||||||||||||||
seq2  ACTAT-CACTTCTGTGTTTGCTAGGCCCCG  1020