BAC Information

Click to search

BAC

Clone NameB6Ng01-117D09
Chromosome7 (Build37)13 (Build37)
Map Location 19,701,880 - 19,702,05457,726,090 - 57,727,227
singlet/doubletsingletsinglet
Overlap geneEG243866
Upstream geneIgfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5
Downstream geneFbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117D09.bB6Ng01-117D09.g
ACCDH922010DH922011
length1811,126
definitionDH922010|Mus musculus domesticus DNA, BAC clone: B6Ng01-117D09, 5' end.DH922011|Mus musculus domesticus DNA, BAC clone: B6Ng01-117D09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,701,880 - 19,702,054)(57,726,090 - 57,727,227)
sequence
ctttggggatgaggtattctaaaggtctcttggaggaggaggaagaggaa
gtagagaaaaagggatgaaggggaagtagaggaagaggaggagaaagaga
agggggaagaagaggaggaagtggaggatttttttggatttttttttttt
tttttttttcttttttttttctttttttttt
gaattctcttgctcttagaatgaagatatgtgtctccttgtcttggaagc
tcttcctggacaaagtctcagctatcagctattcaaggaagtgtggtcca
tgtttctgatcctcaaggcttccttcaagtagggacctgctaagtgccat
taccacgcctgatgaacaagacctgacagatctatttgagaagactttac
aaacatgctcaccatctgggtttctgaaccctgtcttggtgaccatcttc
ctcacactaggcctctgggtcagcacttctgtttctgttttgttatttca
tctagattatgaagtcctggatggttggacccagatctctgaccagcgtg
gcatgttggcctagttcaagacctcaaccagagagccctgagctgtagag
ccctatctggatagcagaggtgaccatggcatcatcaggatgagctgata
cattcaatgcatctttctcagttggacactcttaacatcattaaccaacc
ctagcaatcatgaagatcccgagaaggatgtgaacaggggaggtgagagc
ttctcagggtctgaagaacaactcttagtgtacagattaaggtatctgca
ctgtgctctctacgtcagtggctttaaatcaagtattagggtgccataaa
aaatctcctttagccttccccattgaaagaacagataatgccttatgtaa
acacatgacactgtcacctagatcaccttagacattgttcgcaggaatct
ttgctgcagactcagcatgtgaggatgctccagagactacaaacaagaag
attaaaaaaggaaagtctgtcctctgtggctcacagtccctcacttagtc
cctgccagttctccatcgtgggcgggactgaatggcaagtccatgtctgg
gtctctatgggtggcaggatgaccacagtcttcacacagtgacaggcctc
cctcagctggctgactcaagaagtccgttcgcatggcagggcagctgtca
acactgtttctgcgtgcagcttgtgcattgtgatagctccagtgcataca
gcagcagggaagcttgggccatccctctgctagagcacagagaattctcc
ctctaagctccagatgtcactgtctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_19701880_19702054
seq2: B6Ng01-117D09.b_178_234 (reverse)

seq1  AAAAAAAAAAGAAAAAAAATCTAACCCGGACTGGTGGCCTATCCCTTTAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCAGGACTCTGGAAGCAGAGGCAGCCAGATTTCTGTGAGTTCCTGGCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGCCAGGGCTATAGAGTAAAACCCTGTCTCATTTAAAAAAAAAAAAAAAA  150
      |   |     | | || ||||             ||||| ||||||||||
seq2  AAAAA-----AAAAAGAAAAA-------------AAAAAGAAAAAAAAAA  32

seq1  ATCAGACAAAAGCAAACAAAATCCT  175
      |  | | |||| | || ||||||||
seq2  AAAAAAAAAAATCCAAAAAAATCCT  57

seq1: chr13_57726090_57727227
seq2: B6Ng01-117D09.g_68_1193

seq1  GAATTCTCTTGCTCTTAGAATGAAGATATGTGTCTCCTTGTCTTGGAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGCTCTTAGAATGAAGATATGTGTCTCCTTGTCTTGGAAGC  50

seq1  TCTTCCTGGACAAAGTCTCAGCTATCAGCTATTCAAGGAAGTGTGGTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGGACAAAGTCTCAGCTATCAGCTATTCAAGGAAGTGTGGTCCA  100

seq1  TGTTTCTGATCCTCAAGGCTTCCTTCAAGTAGGGACCTGCTAAGTGCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGATCCTCAAGGCTTCCTTCAAGTAGGGACCTGCTAAGTGCCAT  150

seq1  TACCACGCCTGATGAACAAGACCTGACAGATCTATTTGAGAAGACTTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACGCCTGATGAACAAGACCTGACAGATCTATTTGAGAAGACTTTAC  200

seq1  AAACATGCTCACCATCTGGGTTTCTGAACCCTGTCTTGGTGACCATCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCTCACCATCTGGGTTTCTGAACCCTGTCTTGGTGACCATCTTC  250

seq1  CTCACACTAGGCCTCTGGGTCAGCACTTCTGTTTCTGTTTTGTTATTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACTAGGCCTCTGGGTCAGCACTTCTGTTTCTGTTTTGTTATTTCA  300

seq1  TCTAGATTATGAAGTCCTGGATGGTTGGACCCAGATCTCTGACCAGCGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATTATGAAGTCCTGGATGGTTGGACCCAGATCTCTGACCAGCGTG  350

seq1  GCATGTTGGCCTAGTTCAAGACCTCAACCAGAGAGCCCTGAGCTGTAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTGGCCTAGTTCAAGACCTCAACCAGAGAGCCCTGAGCTGTAGAG  400

seq1  CCCTATCTGGATAGCAGAGGTGACCATGGCATCATCAGGATGAGCTGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATCTGGATAGCAGAGGTGACCATGGCATCATCAGGATGAGCTGATA  450

seq1  CATTCAATGCATCTTTCTCAGTTGGACACTCTTAACATCATTAACCAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAATGCATCTTTCTCAGTTGGACACTCTTAACATCATTAACCAACC  500

seq1  CTAGCAATCATGAAGATCCCGAGAAGGATGTGAACAGGGGAGGTGAGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAATCATGAAGATCCCGAGAAGGATGTGAACAGGGGAGGTGAGAGC  550

seq1  TTCTCAGGGTCTGAAGAACAACTCTTAGTGTACAGATTAAGGTATCTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGGTCTGAAGAACAACTCTTAGTGTACAGATTAAGGTATCTGCA  600

seq1  CTGTGCTCTCTACGTCAGTGGCTTTAAATCAAGTATTAGGGTGCCATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTCTCTACGTCAGTGGCTTTAAATCAAGTATTAGGGTGCCATAAA  650

seq1  AAATCTCCTTTAGCCTTCCCCATTGAAAGAACAGATAATGCCTTATGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCCTTTAGCCTTCCCCATTGAAAGAACAGATAATGCCTTATGTAA  700

seq1  ACACATGACACTGTCACCTAGATCACCTTAGACATTGTTCGCAGGAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGACACTGTCACCTAGATCACCTTAGACATTGTTCGCAGGAATCT  750

seq1  TTGCTGCAGACTCAGCATGTGAGGATGCTCCAGAGACTACAAACAAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCAGACTCAGCATGTGAGGATGCTCCAGAGACTACAAACAAGAAG  800

seq1  ATTAAAAAAGGAAAGTCTGTCCTCTGTGGCTCACAGTCCCTCACTTAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAGGAAAGTCTGTCCTCTGTGGCTCACAGTCCCTCACTTAGTC  850

seq1  CCTGCCAGTTCTCCATCGTGGGCGGGACTGAATGGCAAGTCCATGTCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAGTTCTCCATCGTGGGCGGGACTGAATGGCAAGTCCATGTCTGG  900

seq1  GCCTCTATGGGTGGCCAGGATGACCACAGTCTTCCACACAGTTGACAGGC  950
      | |||||||||||| |||||||||||||||||| ||||||| ||||||||
seq2  GTCTCTATGGGTGG-CAGGATGACCACAGTCTT-CACACAG-TGACAGGC  947

seq1  CTCCCTCAGCTGGCCTGACTCAAG-AGTCCGTTCGCATGGCCAGGGCCAG  999
      ||||||||||||| |||||||||| ||||||||||||||| ||||| |||
seq2  CTCCCTCAGCTGG-CTGACTCAAGAAGTCCGTTCGCATGG-CAGGG-CAG  994

seq1  CTGTCCACACCTGTTTCTGCCGTGCAGCCTTGTGCATTGTGTATGCTCCA  1049
      ||||| ||| ||||||||| ||||||| |||||||||||||   ||||||
seq2  CTGTCAACA-CTGTTTCTG-CGTGCAG-CTTGTGCATTGTGATAGCTCCA  1041

seq1  GGTGCATACAGCAGCCAGGGAGGCTTGGGCCACCCCTCTGCCAGAGGCAC  1099
       ||||||||||||| |||||| |||||||||| |||||||| ||| ||||
seq2  -GTGCATACAGCAG-CAGGGAAGCTTGGGCCATCCCTCTGCTAGA-GCAC  1088

seq1  AGAGGATCTCCCCTCT-AGCTCCCAGGATGCCACTGTCTT  1138
      |||| ||   |||||| ||||||   |||| |||||||||
seq2  AGAGAATTCTCCCTCTAAGCTCC--AGATGTCACTGTCTT  1126