BAC Information

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BAC

Clone NameB6Ng01-117E23
Chromosome1 (Build37)7 (Build37)
Map Location 4,131,556 - 4,132,06099,206,302 - 99,207,462
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneXkr4, LOC100038975, LOC664792
Downstream geneLOC619785, Rp1h, Sox17, LOC664830, LOC664838, LOC664853, LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20, Atp6v1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117E23.bB6Ng01-117E23.g
ACCDH922082DH922083
length1,1571,156
definitionDH922082|Mus musculus domesticus DNA, BAC clone: B6Ng01-117E23, 5' end.DH922083|Mus musculus domesticus DNA, BAC clone: B6Ng01-117E23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,131,556 - 4,132,060)(99,206,302 - 99,207,462)
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
ttcatctcataccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctagcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactacctgaggatcccacaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaggaatgaatttatgaaattcctagacaa
atggttggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcaaatgatatgtactcaccgataagtggatattagcccagaaac
ttagaatacccgagatataagataccatttgcgaaacacatgaaactgaa
gaagaatgaagaccaaagtgtggacactttgccccttcttagaattggaa
acaatcacccatggaaggagttacagagacaaagtttggagctgagacaa
aaggatggaccatctagagactgccatatccagggatccaccccataatt
agcctccaacagatgacaccattgcatacactagcaagatattgctgaaa
agacccagatatagctgtctcttgtgagactatgccggggcctagcaaac
acataagtggatgctcacagtcagctgttggatggatcacacagccccaa
atggaggagctagagaaagtacccaaggagctaagggaactgcaacccta
taggtggaacacattatgactaaccagtacccggagctctgactctagct
gcatatgtatcaaaatggctagtcagcatcactgggaagaggagtccaat
gactgcaaactttaatgctcagtacagggacgccaggcaaagtgggaatg
ttgtgta
gaattccaggaaagctaatgttaaggagcacgaaggaaaatgaatgctca
tataccaattaagggcacaggaatactctctaagtatacaaaagggacta
caactacaatgcaaataaatacaaatagaattacaattataattacaatc
acagatgggaaaataacactagaaaaggccaacagagggagagtcagggc
tttgaggaaaaaatagtaatttaactaaagtcaagaactttcaataaaat
caccatttagactatttctatgtatcagaacagtgaggctctgaatattt
gttagaggaaagtgctgtgttcatgccagtgtccaaagctgatgctaaaa
tgccaccatataaagacagaaagctgatccaagattttaagaatggcata
cccaagagagccttgaggcagctttagttctaaaggtagatatttgggca
aaagtaggtcaatgagagaaatgaagtttccctattggaaaaatctgaat
gtgaaccactaacctggagctactttgcttaatgaggaaaggggaagcac
tagaaaattcatgagttaactactcactatatacagatttctggagaatt
attaagtaattagaactggcagcaagaaaaggctgcaagaacattttcac
aagacaataagtaaatatccccagaaaagacagttgaatgatgcttcaac
cacaagtttcaaggatcccacaaaggttagaggttagtgaaatatttgta
tatctctatattttatcactgaaaggtgaattacatccattcattgtagc
taacagtgaatgtatttatgttagtgtgctgtaatttttttctgtaataa
ttcttcagacaccgtaagtacgtaggaacttctgaaattctattagcaag
gtttatgggaagtcttgccatttgaatagccactgcccaagcacctgatg
acagttaccaaatagcactatattttcaatttagtagctacaaaaaaaag
gtaaaattaattgcttttactccagaacagcttcttaaattgaacaggtt
cttgagttgatcagcccagtgacacctgaacccttccccattcattgttt
ggataaacacagtcaatggaactgattcttaagctgttgtcttgtgctgt
gcaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_4131556_4132060
seq2: B6Ng01-117E23.b_949_1201 (reverse)

seq1  TACACAACATTCCCACACTGGGTCTACAATACTTTGAGGCTCAATATAGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGTTCCATCCTGTTCTTCAAGTTGGGGCCTGGCTGTTGCCTGCAACTGAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  ACTCTAAACAATAATTAACATAATGTCATTTTTTTCTTTATTGATTTTTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TATTAGATATTTTCTTTATTTACATTTCAAATGCTATCCTGAAAGTTTCC  200
                                                        
seq2  --------------------------------------------------  0

seq1  TATACCCTCCCCCTTGTCCTGCTCCCCTACCTACCCACTCCCACTTCTTG  250
                                 |||  |  || |||||||  |||
seq2  ---------------------------TACACA-ACATTCCCACT--TTG  20

seq1  GCCCTGGCATTCCCCTGTACTTGGGCATATAAAGTTTGCAATACCAAGTG  300
        |||||| |  |||||||| || |||| ||||||||||| |    | ||
seq2  --CCTGGCGT--CCCTGTAC-TGAGCAT-TAAAGTTTGCAGT---CATTG  61

seq1  GCCT-CTCTTCCCAATGATGGCCAACTAGGCCATCTCCTGCTAAAAATGC  349
      | || ||||||||| |||| ||  |||| ||||| |  || || | ||||
seq2  GACTCCTCTTCCCAGTGAT-GCTGACTA-GCCATTT--TGATACATATGC  107

seq1  AGCTAGAAACACAAGCTCTGAGGGTACTGGTTAGTTCATATTATTGTTCC  399
      |||||||  ||  |||||   ||||||||||||| ||||| |  ||||||
seq2  AGCTAGAGTCA-GAGCTC--CGGGTACTGGTTAG-TCATAAT-GTGTTCC  152

seq1  ACCTATAGGGTTGCAGACCCCTTCAACTCCTTAAGTGCTTTCTCTAGCTT  449
      ||||||||||||||||  ||||| | ||||||  || |||||||||||| 
seq2  ACCTATAGGGTTGCAGTTCCCTT-AGCTCCTTGGGTACTTTCTCTAGCTC  201

seq1  CTCCATTGGGGGCCCTGTGTTTCATCCTATAGATAGATGATTGTGAGCAT  499
      ||||||| |||||  |||| | |||||     | || ||| |||||||||
seq2  CTCCATTTGGGGCTGTGTGATCCATCC----AACAGCTGACTGTGAGCAT  247

seq1  CCACTT  505
      ||||||
seq2  CCACTT  253

seq1: chr7_99206302_99207462
seq2: B6Ng01-117E23.g_63_1218

seq1  GAATTCCAGGAAAGCTAATGTTAAGGAGCACGAAGGAAAATGAATGCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAAAGCTAATGTTAAGGAGCACGAAGGAAAATGAATGCTCA  50

seq1  TATACCAATTAAGGGCACAGGAATACTCTCTAAGTATACAAAAGGGACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAATTAAGGGCACAGGAATACTCTCTAAGTATACAAAAGGGACTA  100

seq1  CAACTACAATGCAAATAAATACAAATAGAATTACAATTATAATTACAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTACAATGCAAATAAATACAAATAGAATTACAATTATAATTACAATC  150

seq1  ACAGATGGGAAAATAACACTAGAAAAGGCCAACAGAGGGAGAGTCAGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGGGAAAATAACACTAGAAAAGGCCAACAGAGGGAGAGTCAGGGC  200

seq1  TTTGAGGAAAAAATAGTAATTTAACTAAAGTCAAGAACTTTCAATAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGAAAAAATAGTAATTTAACTAAAGTCAAGAACTTTCAATAAAAT  250

seq1  CACCATTTAGACTATTTCTATGTATCAGAACAGTGAGGCTCTGAATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTAGACTATTTCTATGTATCAGAACAGTGAGGCTCTGAATATTT  300

seq1  GTTAGAGGAAAGTGCTGTGTTCATGCCAGTGTCCAAAGCTGATGCTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGGAAAGTGCTGTGTTCATGCCAGTGTCCAAAGCTGATGCTAAAA  350

seq1  TGCCACCATATAAAGACAGAAAGCTGATCCAAGATTTTAAGAATGGCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCATATAAAGACAGAAAGCTGATCCAAGATTTTAAGAATGGCATA  400

seq1  CCCAAGAGAGCCTTGAGGCAGCTTTAGTTCTAAAGGTAGATATTTGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGAGCCTTGAGGCAGCTTTAGTTCTAAAGGTAGATATTTGGGCA  450

seq1  AAAGTAGGTCAATGAGAGAAATGAAGTTTCCCTATTGGAAAAATCTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGGTCAATGAGAGAAATGAAGTTTCCCTATTGGAAAAATCTGAAT  500

seq1  GTGAACCACTAACCTGGAGCTACTTTGCTTAATGAGGAAAGGGGAAGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCACTAACCTGGAGCTACTTTGCTTAATGAGGAAAGGGGAAGCAC  550

seq1  TAGAAAATTCATGAGTTAACTACTCACTATATACAGATTTCTGGAGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATTCATGAGTTAACTACTCACTATATACAGATTTCTGGAGAATT  600

seq1  ATTAAGTAATTAGAACTGGCAGCAAGAAAAGGCTGCAAGAACATTTTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTAATTAGAACTGGCAGCAAGAAAAGGCTGCAAGAACATTTTCAC  650

seq1  AAGACAATAAGTAAATATCCCCAGAAAAGACAGTTGAATGATGCTTCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAATAAGTAAATATCCCCAGAAAAGACAGTTGAATGATGCTTCAAC  700

seq1  CACAAGTTTCAAGGATCCCACAAAGGTTAGAGGTTAGTGAAATATTTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTTTCAAGGATCCCACAAAGGTTAGAGGTTAGTGAAATATTTGTA  750

seq1  TATCTCTATATTTTATCACTG-AAGGTGAATTACATCCATTCATTGTAGC  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TATCTCTATATTTTATCACTGAAAGGTGAATTACATCCATTCATTGTAGC  800

seq1  TAACAGTGAATGTATTTATGTTAGTGTGCTGTAATTTTTTTCTGTAATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTGAATGTATTTATGTTAGTGTGCTGTAATTTTTTTCTGTAATAA  850

seq1  TTCTTCAGACACCGTAAGTACGTAGGAACTTCTGAAATTCTATTAGCAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGACACCGTAAGTACGTAGGAACTTCTGAAATTCTATTAGCAAG  900

seq1  GTTTATGGGAAGTCTTGCCATTTGAATAGCCACTGCCCAAGCACCTGATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGGGAAGTCTTGCCATTTGAATAGCCACTGCCCAAGCACCTGATG  950

seq1  ACAGTTACCAAATAGCACTAATATTTCAATTTAGTAGCTACCAAAAAAAA  999
      ||||||||||||||||||||   ||||||||||||||||| |||||||||
seq2  ACAGTTACCAAATAGCACTATATTTTCAATTTAGTAGCTA-CAAAAAAAA  999

seq1  GGTAAAATTAATTGCCTTTTACTCCAGAACAGCTTTCTAAATTG-ACAGG  1048
      |||||||||||||| ||||||||||||||||||||  ||||||| |||||
seq2  GGTAAAATTAATTG-CTTTTACTCCAGAACAGCTTCTTAAATTGAACAGG  1048

seq1  TCCTGGAGTTGGATCAAGCCCAGTGACACCTG-ACCCTCCCCCTTTCATT  1097
      | || ||||| |||| |||||||||||||||| ||||| |||| ||||||
seq2  TTCTTGAGTT-GATC-AGCCCAGTGACACCTGAACCCTTCCCCATTCATT  1096

seq1  GGTTTGGATAACCACCAAGTCAATGGACTGGATTCCTAAAGCTGTTGTCG  1147
       |||||||||| |||  ||||||||||   |||| || ||||||||||| 
seq2  -GTTTGGATAAACAC--AGTCAATGGAACTGATT-CTTAAGCTGTTGTCT  1142

seq1  T-TGCTGTGACAAAC  1161
      | ||||||| |||||
seq2  TGTGCTGTG-CAAAC  1156