BAC Information

Click to search

BAC

Clone NameB6Ng01-117I04
Chromosome7 (Build37)
Map Location 141,573,591 - 141,733,735
singlet/doubletdoublet
Overlap geneLOC100043248, LOC100043699
Upstream geneLOC668747, 4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, Dhx32, LOC100043695, Fank1, Adam12, A130023I24Rik, 4933400E14Rik
Downstream geneLOC668750, Dock1, B830028B13Rik, EG668693, LOC100043254, Foxi2, Clrn3, Ptpre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117I04.bB6Ng01-117I04.g
ACCDH922233DH922234
length1,090156
definitionDH922233|Mus musculus domesticus DNA, BAC clone: B6Ng01-117I04, 5' end.DH922234|Mus musculus domesticus DNA, BAC clone: B6Ng01-117I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,732,644 - 141,733,735)(141,573,591 - 141,573,746)
sequence
gaattctcagaagccttttaacatgtcatagcccctgtgtccccactggc
agcctggactgaatgtcagtagcacagccgcagaatctgagtccctgcct
ttagagggctcccaagcccatccatttctgtttgtttccccagtcccacg
ggacttgggcaagggaaagacatgggagcccagcagaggtgcttacatga
ttggaatgttctcctggtttctgccatccttcccagacatttttgcctga
ggctatcactgtggttgctctgttgtcctttgagcccaggtctgcagaca
tgggacagtggtgagtgcatgcagatctgagcagagtaagcactgtgcag
agctgattcctactcaactcctcttgcctcacactgcattgccaaatcta
gaagatgtgggcaccagagaggccttggcctgtcagcatacttgttgcat
tttctacacttctttttccacacctcttctccatactcagccctgcatct
caggtcccaaccctgtcaactccatcctctttttttcttcctttctagct
tgatgtcattcactggacatcttccttactgacatccttgttgtgtccaa
attctaagcccagtttccagtggcccaaagagtctggcctttcccaccaa
tgtctttatcacatgaatttcatggctaatctgcattgtttctctcttta
atttaaagctttggttctcagaggtctatctatctatctatctatctatc
tatctatctatctatctctgtgtattatgtgtatatgtgcaggcatgcag
ctgccacagtatacatttgaacaacctcttgcagtcccttctctctctcc
acctgtacctgggtttctgggattggactcaggttgttggtcttggagag
tctttgcccactgacttgtctactttgaatttctattcttattttatttt
ggtgttgtttaaattgctttcctgggatagatgtaagcagtctttacttt
cttcttgtttaggtctcaatgataactaatgtattgagtccaccaaattc
actttgagcacatgtgttttttggtgcttaaaggccatgg
tcagaaatcctattctagttaggaatagtgcatctagcagggaaaataga
cctgtcatgaatagaatagcaaatctctgccaggtctgttctgtagtgga
aaggctgatattggtgtaagtaggggcgtgtgtgtgtgtgtgtgtgtgtg
tgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_141732644_141733735
seq2: B6Ng01-117I04.b_49_1138 (reverse)

seq1  CCATGGCCTTTAAGCA-CAAAAAACACATTGGTGCTCAAAGTGAATTTGG  49
      |||||||||||||||| ||||||||||||  |||||||||||||||||||
seq2  CCATGGCCTTTAAGCACCAAAAAACACAT--GTGCTCAAAGTGAATTTGG  48

seq1  TGGACTC-ATACATTAGTTTATCATTGAGACCTAAAC-AGAAG-AAGTAA  96
      ||||||| ||||||||| ||||||||||||||||||| ||||| ||||||
seq2  TGGACTCAATACATTAG-TTATCATTGAGACCTAAACAAGAAGAAAGTAA  97

seq1  AGACTGCTTACATCTATCCCAGGAAAGCAATTTAAACAACACCAAAATAA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCTTACATCTATCCCAGGAAAGCAATTTAAACAACACCAAAATAA  147

seq1  AATAAGAATAGAAATTCAAAGTAGACAAGTCAGTGGGCAAAGACTCTCCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAATAGAAATTCAAAGTAGACAAGTCAGTGGGCAAAGACTCTCCA  197

seq1  AGACCAACAACCTGAGTCCAATCCCAG-AACCCAGGTACAGGTGGAGAGA  245
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGACCAACAACCTGAGTCCAATCCCAGAAACCCAGGTACAGGTGGAGAGA  247

seq1  GAGAAGGGACTGCAAGAGGTTGTTCAAATGTATACTGTGGCAGCTGCATG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGACTGCAAGAGGTTGTTCAAATGTATACTGTGGCAGCTGCATG  297

seq1  CCTGCACATATACACATAATACACAGAGATAGATAGATAGATAGATAGAT  345
      ||||||||||||||||||||||||||    ||||||||||||||||||||
seq2  CCTGCACATATACACATAATACACAG----AGATAGATAGATAGATAGAT  343

seq1  AGATAGATAGATAGATAGATAGACCTCTGAGAACCAAAGCTTTAAATTAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATAGATAGATAGACCTCTGAGAACCAAAGCTTTAAATTAA  393

seq1  AGAGAGAAACAATGCAGATTAGCCATGAAATTCATGTGATAAAGACATTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAACAATGCAGATTAGCCATGAAATTCATGTGATAAAGACATTG  443

seq1  GTGGGAAAGGCCAGACTCTTTGGGCCACTGGAAACTGGGCTTAGAATTTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAAGGCCAGACTCTTTGGGCCACTGGAAACTGGGCTTAGAATTTG  493

seq1  GACACAACAAGGATGTCAGTAAGGAAGATGTCCAGTGAATGACATCAAGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAACAAGGATGTCAGTAAGGAAGATGTCCAGTGAATGACATCAAGC  543

seq1  TAGAAAGGAAGAAAAAAAGAGGATGGAGTTGACAGGGTTGGGACCTGAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGGAAGAAAAAAAGAGGATGGAGTTGACAGGGTTGGGACCTGAGA  593

seq1  TGCAGGGCTGAGTATGGAGAAGAGGTGTGGAAAAAGAAGTGTAGAAAATG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGCTGAGTATGGAGAAGAGGTGTGGAAAAAGAAGTGTAGAAAATG  643

seq1  CAACAAGTATGCTGACAGGCCAAGGCCTCTCTGGTGCCCACATCTTCTAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGTATGCTGACAGGCCAAGGCCTCTCTGGTGCCCACATCTTCTAG  693

seq1  ATTTGGCAATGCAGTGTGAGGCAAGAGGAGTTGAGTAGGAATCAGCTCTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCAATGCAGTGTGAGGCAAGAGGAGTTGAGTAGGAATCAGCTCTG  743

seq1  CACAGTGCTTACTCTGCTCAGATCTGCATGCACTCACCACTGTCCCATGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGCTTACTCTGCTCAGATCTGCATGCACTCACCACTGTCCCATGT  793

seq1  CTGCAGACCTGGGCTCAAAGGACAACAGAGCAACCACAGTGATAGCCTCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGACCTGGGCTCAAAGGACAACAGAGCAACCACAGTGATAGCCTCA  843

seq1  GGCAAAAATGTCTGGGAAGGATGGCAGAAACCAGGAGAACATTCCAATCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAATGTCTGGGAAGGATGGCAGAAACCAGGAGAACATTCCAATCA  893

seq1  TGTAAGCACCTCTGCTGGGCTCCCATGTCTTTCCCTTGCCCAAGTCCCGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCACCTCTGCTGGGCTCCCATGTCTTTCCCTTGCCCAAGTCCCGT  943

seq1  GGGACTGGGGAAACAAACAGAAATGGATGGGCTTGGGAGCCCTCTAAAGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGGGGAAACAAACAGAAATGGATGGGCTTGGGAGCCCTCTAAAGG  993

seq1  CAGGGACTCAGATTCTGCGGCTGTGCTACTGACATTCAGTCCAGGCTGCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACTCAGATTCTGCGGCTGTGCTACTGACATTCAGTCCAGGCTGCC  1043

seq1  AGTGGGGACACAGGGGCTATGACATGTTAAAAGGCTTCTGAGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGACACAGGGGCTATGACATGTTAAAAGGCTTCTGAGAATTC  1090

seq1: chr7_141573591_141573746
seq2: B6Ng01-117I04.g_72_227

seq1  TCAGAAATCCTATTCTAGTTAGGAATAGTGCATCTAGCAGGGAAAATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATCCTATTCTAGTTAGGAATAGTGCATCTAGCAGGGAAAATAGA  50

seq1  CCTGTCATGAATAGAATAGCAAATCTCTGCCAGGTCTGTTCTGTAGTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCATGAATAGAATAGCAAATCTCTGCCAGGTCTGTTCTGTAGTGGA  100

seq1  AAGGCTGATATTGGTGTAAGTAGGGGCGTGTGTGTGTGTGTGTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGATATTGGTGTAAGTAGGGGCGTGTGTGTGTGTGTGTGTGTGTG  150

seq1  TGTGTG  156
      ||||||
seq2  TGTGTG  156