BAC Information

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BAC

Clone NameB6Ng01-117L02
Chromosome5 (Build37)7 (Build37)
Map Location 39,475,110 - 39,475,28711,072,825 - 11,073,890
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneStx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
Downstream geneLOC384174, Hs3st1, EG665839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117L02.bB6Ng01-117L02.g
ACCDH922368DH922369
length8941,068
definitionDH922368|Mus musculus domesticus DNA, BAC clone: B6Ng01-117L02, 5' end.DH922369|Mus musculus domesticus DNA, BAC clone: B6Ng01-117L02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,475,110 - 39,475,287)(11,072,825 - 11,073,890)
sequence
gaattcttggaggagtgaagagaagggaaattgtcacagagaggtagtgt
atgagagaagaaaaacttttcaaaaaaaaaaggcaagcaaaattttttaa
agaggaaccaaaaaattagataattgcttaaaaaaatattcaagatcctt
aggtatcaaagatgtgcatattaaaactactttgttatcttattttactt
atgctagaatggctaagatcaacagcacaagttaaagcccatgatattga
atatgtagagcaagggaaagactcatctattgctagcaagaatgcaaaat
tgtacagccactatggaatcagtgtgtcaatttttcaggaagatagcaat
tgatggtggtgcatgcctttaatcccagcactcgggaggcagaggcaggc
atctttctgatttcgaggccagcctggtctacaaagtgagttccaaaaca
gccagggctacacagataaaccatgtcttgaaaaaaaaaaaaaaaagatc
cactctcaagagctagccgtaaaaatcttggtcatggacccaaagcattt
ttcattctatgacaaatacttattcaagcatattaaatgtagcaccatta
acagtggaaggacactggagaaacctagatctccctcaacacaagaattg
ataaaggaaatgtggcacattttcacaaggaaactttaatcaatcattag
aaaactaaaatcatagagtgtacaggtaaaattaacagaactagaaaaaa
aattatccaaagggtgatatcctagatccagaaatataacttagtatata
tttgcttgatcattcaaggcaataataaatagctaaattatagaaccaga
gattttaggaaagggagtagaagtacattttgctagaaaaagga
gaattcacaggacttaaagatctttgtatttacaatagctgaggtcattg
tcaaaaatggtatggttttgtgggatagtggagtttaacttgatcattta
cctccagtcttgttatagagataggaaaataaggaaatgaagattcttta
gtcttagaatgtagctgttataattgcattccagctgctgtgtttgcagt
ctggtattcacaaatgtctctgccatttcctgcattaacaaaaggctgcc
cttatctgtatatgaggacagagttcaatcaaaatgggggataccaagcc
ttctggtttgcagaaattaggagttctgagctttgtactttgagtcactt
tttataaagtttatcaatgttttagtgaaatgcagtcaactctgatttat
ccttgaaaaaaatcttaaaatcatctttgtgatgatggacttgtctgtga
cttacctcaccctgttaagatctcccttgtgttctcggacttgtaagtgt
tgaatagcttatatttggctcttaagagtgcagtttgtgaatgaaaacaa
aaggttttttttccttagatacagtgtcttttaggaatacataattattt
tgagattcatcactgctgctttttaataactttatagtgctataccatgt
ttggttttgtaactatacaacaatttattgatcttttttatttcattcgg
ctctttggttgaatccctttctttgagctgtttacatattatggatatga
gcatttgatttcaatatgcttacatttttaaattcctctcgagccagtaa
ttaaagtatatgtgaatgcttctatttttaagaaagtgtcaaactggttt
agattgctctagatcagtggttctcaaccttttctgatggttgcaattct
ttaatacagttcctcatgctgtggtaaccctcaaccatagattatttttt
gttgctacttcacactgtaattttgctgctggaatgaattaaatattgtg
tttcctatggtctaaggtgaaacctgtgaaaggtcatttgacctccaaat
ggtcacgacccattgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_39475110_39475287
seq2: B6Ng01-117L02.b_106_539 (reverse)

seq1  TTTTCTTTTTGGTTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTG  50
      |||| |||||  ||||||| ||||| ||||| ||||| ||||||||||||
seq2  TTTTTTTTTT--TTTTTTCAAGACATGGTTTATCTGTGTAGCCCTGGCTG  48

seq1  TCCTGGAGCTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGACATCTGC  100
      |  |||| ||||||||||||||||||||||||||||| ||||| |  |||
seq2  TTTTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAAATCAGAAAGATGC  98

seq1  CTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCC  150
      |||||||||||||||||||||||||||||||||| ||| ||||||     
seq2  CTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGCACCACCA-----  143

seq1  GCCCGGCGCTTTTTTTTTTGAAAAGTTT----------------------  178
        |    || | | ||  |||||| ||                       
seq2  -TCAATTGC-TATCTTCCTGAAAAATTGACACACTGATTCCATAGTGGCT  191

seq1  --------------------------------------------------  178
                                                        
seq2  GTACAATTTTGCATTCTTGCTAGCAATAGATGAGTCTTTCCCTTGCTCTA  241

seq1  --------------------------------------------------  178
                                                        
seq2  CATATTCAATATCATGGGCTTTAACTTGTGCTGTTGATCTTAGCCATTCT  291

seq1  --------------------------------------------------  178
                                                        
seq2  AGCATAAGTAAAATAAGATAACAAAGTAGTTTTAATATGCACATCTTTGA  341

seq1  --------------------------------------------------  178
                                                        
seq2  TACCTAAGGATCTTGAATATTTTTTTAAGCAATTATCTAATTTTTTGGTT  391

seq1  -------------------------------------------  178
                                                 
seq2  CCTCTTTAAAAAATTTTGCTTGCCTTTTTTTTTTGAAAAGTTT  434

seq1: chr7_11072825_11073890
seq2: B6Ng01-117L02.g_68_1135 (reverse)

seq1  TCTCAATGGGTCGTGACCCTTTTGGGAGTCAAATGACCCTTTCACAGGTG  50
      |||||||||||||||| || |||||  ||||||||| |||||||||||| 
seq2  TCTCAATGGGTCGTGA-CCATTTGGAGGTCAAATGA-CCTTTCACAGGTT  48

seq1  TCACCTAAGACCATAGGAAAACACAAATATTTACAATTCATACCAGCAGC  100
      |||||| |||||||||| |||||| |||||||  ||||||| ||||||||
seq2  TCACCTTAGACCATAGG-AAACAC-AATATTT--AATTCATTCCAGCAGC  94

seq1  AAAATTACAGTTGTGAAGTAGCAACAAAAATAATTCTATGGTTGAGGGTT  150
      |||||||||| |||||||||||||||||||  | ||||||||||||||||
seq2  AAAATTACAG-TGTGAAGTAGCAACAAAAAATAATCTATGGTTGAGGGTT  143

seq1  ACCACAGCATGAGGAACTGTATTAAAGAATTGC-AGCATCAG-AAAGGTT  198
      ||||||||||||||||||||||||||||||||| | |||||| |||||||
seq2  ACCACAGCATGAGGAACTGTATTAAAGAATTGCAACCATCAGAAAAGGTT  193

seq1  GAGAACCACTGATCTAGAGCAATCTATACCAGTTTGACACTTTCTTAAAA  248
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAGAACCACTGATCTAGAGCAATCTAAACCAGTTTGACACTTTCTTAAAA  243

seq1  ATAGAAGCATTCACATATAC-TTAATTACTGGCTCGAGAGGAATTTAAAA  297
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATAGAAGCATTCACATATACTTTAATTACTGGCTCGAGAGGAATTTAAAA  293

seq1  ATGTAAGCATATTG-AATCAAATGCTCATATCCATAATATGT-AACAGCT  345
      |||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  ATGTAAGCATATTGAAATCAAATGCTCATATCCATAATATGTAAACAGCT  343

seq1  C-AAGAAA-GGATTCAACC-AAGAGCCGAATG-AATAAAAAAGATCAATA  391
      | |||||| |||||||||| |||||||||||| |||||||||||||||||
seq2  CAAAGAAAGGGATTCAACCAAAGAGCCGAATGAAATAAAAAAGATCAATA  393

seq1  AATTGTTGTATAGTTACAAAACCAAACATGGTATAGCACTATAAAGTTAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTGTATAGTTACAAAACCAAACATGGTATAGCACTATAAAGTTAT  443

seq1  TAAAAAGCAGCAGTGATGAATCTCAAAATAATTATGTATTCCTAAAAGAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCAGCAGTGATGAATCTCAAAATAATTATGTATTCCTAAAAGAC  493

seq1  ACTGTATCTAAGGAAAAAAAACCTTTTGTTTTCATTCACAAACTGCACTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATCTAAGGAAAAAAAACCTTTTGTTTTCATTCACAAACTGCACTC  543

seq1  TTAAGAGCCAAATATAAGCTATTCAACACTTACAAGTCCGAGAACACAAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGCCAAATATAAGCTATTCAACACTTACAAGTCCGAGAACACAAG  593

seq1  GGAGATCTTAACAGGGTGAGGTAAGTCACAGACAAGTCCATCATCACAAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCTTAACAGGGTGAGGTAAGTCACAGACAAGTCCATCATCACAAA  643

seq1  GATGATTTTAAGATTTTTTTCAAGGATAAATCAGAGTTGACTGCATTTCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTTTAAGATTTTTTTCAAGGATAAATCAGAGTTGACTGCATTTCA  693

seq1  CTAAAACATTGATAAACTTTATAAAAAGTGACTCAAAGTACAAAGCTCAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACATTGATAAACTTTATAAAAAGTGACTCAAAGTACAAAGCTCAG  743

seq1  AACTCCTAATTTCTGCAAACCAGAAGGCTTGGTATCCCCCATTTTGATTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTAATTTCTGCAAACCAGAAGGCTTGGTATCCCCCATTTTGATTG  793

seq1  AACTCTGTCCTCATATACAGATAAGGGCAGCCTTTTGTTAATGCAGGAAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGTCCTCATATACAGATAAGGGCAGCCTTTTGTTAATGCAGGAAA  843

seq1  TGGCAGAGACATTTGTGAATACCAGACTGCAAACACAGCAGCTGGAATGC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAGACATTTGTGAATACCAGACTGCAAACACAGCAGCTGGAATGC  893

seq1  AATTATAACAGCTACATTCTAAGACTAAAGAATCTTCATTTCCTTATTTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAACAGCTACATTCTAAGACTAAAGAATCTTCATTTCCTTATTTT  943

seq1  CCTATCTCTATAACAAGACTGGAGGTAAATGATCAAGTTAAACTCCACTA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTCTATAACAAGACTGGAGGTAAATGATCAAGTTAAACTCCACTA  993

seq1  TCCCACAAAACCATACCATTTTTGACAATGACCTCAGCTATTGTAAATAC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAAAACCATACCATTTTTGACAATGACCTCAGCTATTGTAAATAC  1043

seq1  AAAGATCTTTAAGTCCTGTGAATTC  1066
      |||||||||||||||||||||||||
seq2  AAAGATCTTTAAGTCCTGTGAATTC  1068