BAC Information

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BAC

Clone NameB6Ng01-117N20
Chromosome7 (Build37)
Map Location 4,973,669 - 5,118,966
singlet/doubletdoublet
Overlap gene6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5
Upstream geneLair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524
Downstream geneV1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117N20.bB6Ng01-117N20.g
ACCDH922493DH922494
length1,0861,109
definitionDH922493|Mus musculus domesticus DNA, BAC clone: B6Ng01-117N20, 5' end.DH922494|Mus musculus domesticus DNA, BAC clone: B6Ng01-117N20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,117,851 - 5,118,966)(4,973,669 - 4,974,778)
sequence
gaattcaccaacttgcttttaatatgcaatgtagtctgtactgaagattt
ctatctcagtgggattccctggctctttcatggtattcccttgtttgggt
gagatttgctactgtccttagtaaatactctgcagaccaaccctgagctg
ctggttctgtcttctgtaatgcttaattagttactgaataggtaacttcc
ttactgcattcataacggattccaaactcgtcccttctggcacattggaa
cactggtgggaggcttaactatgtcagaattcaatcttaaaggcacttat
aataaaataatactaaaagagagcacatggatccatacactagactaaca
cggggatagagtatgagtattcgggttaatgagaacttcaaagctccagg
aggtgagtttcagtgaaactctttgcctcgtgagtgcttccaggcctctt
ggcctgccaagcacacttcactggagtgtgtgtagcagtgtccgaggcag
aatacttcccagaactgtgatgtgaagtaggactgggacagttggcaggc
aagtaccacagcccattcatgatcaactgtgccccagtggctgatacagc
atctgtcacccttttcccagagtgtgtggaaattagaggctctgaccctg
cccagcatagctgggcatttgggcctaaaactaccagccattgttcacag
aaaggaggctcaactgtcaccaaaggacagaaagagttggttgtagacag
agtacatgagatgttggcaccgtggaagagacctctgagaagctgataac
agctcatggtgcccttcctgtcaagtcagtcacagaaaggtggcctgagt
tgaagaagccaggtccagatggacactgaaatctccagcacagaaaagcc
tcggaccagctacagtaatgttgattgtgactaagtgctatataaataaa
ataaataaataaataaataataataagagaggggtatagatatcttagag
aatagtttaaaaaactcaattcttgtggaagaagattaaaggaaaatatg
ctttgtgtaaagcagaaagcatgggatcaatataca
gaattcagattctcagcacttacataaacaaacaaacaaacaaacaaaac
ctgggcatgctggcacatgcctgtaagcctgtaatgccagcactgggaag
acagagacaggaggattcctggagctcactgcctagctccagattcaatg
aaagactgtctcaaagaaaggaggaaaggaggagaacacagttgaggcca
catgacactggcctctggcctccacaccctcacatgcaatcatacaccac
acacaaaatgagaacacccgaggacagttataggggctaggatatcaaaa
atactacgtgtggactgtctcacgccatcttgttcctcaggtaaagccca
gagcagagagtttggtcctagactgctgtggcccaccacggaggctgctc
tgacagcttcctcgccttgcgggtggaatgaagaagagtaggagctgtga
actttactagcctcacgccttctttcagcccgcttgccccgcctcattgc
ttcacttattcaggaatacttagcaagcagccagcaagatggctgcgcag
gccaacactgaagcctgatagcctgagtccagtctgcagaacccatgtgg
tgggaggagagcactcactcgtgcaggtttcctctcacctctacatatgt
gcacacacaatacagatggacaccagaaataagtgccttttttatttggg
aaaaagagaagatagggattagcaagctaggtactgtcctaggtcctgag
gacagttcagaacaacgccggccggggctgtggagatggcttagtgacta
agcatctgctatggaaacatggggatcagagttcagattcccgagcccat
ctgaatgccagccagttagggaggtccacctgtcactctagtctctgagg
gcagaaacaggatccccacaacaatctggctaacgagactagccatatct
gtgagctctgagtttgattgagagaccctgctcaatgaatactgcggaag
agagagtgaggatcattcctagcgtcagcttgagtctgcacatgcacaca
tgtgcggtatacattgtgagaatgaaaaggggaaaaaatatcctggcatt
cagaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5117851_5118966
seq2: B6Ng01-117N20.b_50_1135 (reverse)

seq1  TGTATATGGGATCCCCATGCCTTTTCTGCTTTTTAACACAGAGCATATTT  50
      |||||||  ||| |||||||  ||||||||||   ||||| |||||||||
seq2  TGTATAT-TGAT-CCCATGC--TTTCTGCTTT---ACACAAAGCATATTT  43

seq1  TCCTTTTAAAATCTCTCCTTTCCACAGAGAATTGAGTTTTTTTAAAAACT  100
      ||||||   ||||| ||  ||||||| |||||||||||||||   |||||
seq2  TCCTTT---AATCT-TC--TTCCACA-AGAATTGAGTTTTTT---AAACT  83

seq1  ATTTCTTCTAAGGTTATCTATACCCCTCTCTTTATTTATTTTATTTTATT  150
      |||   ||||| | ||||||||||||||||     ||||| |  |||| |
seq2  ATT--CTCTAA-GATATCTATACCCCTCTC-----TTATTATTATTTA-T  124

seq1  TTATTTTATTTTATTTTATTTTATATAGCACTTAGTCACAATCAAACATT  200
      ||||||   ||||||||| |||||||||||||||||||||||| ||||||
seq2  TTATTT--ATTTATTTTA-TTTATATAGCACTTAGTCACAATC-AACATT  170

seq1  ACTGTAGCTGGTCCGAGGCTTTTCTGTGCTGGAGATTTCAGTGTCCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGCTGGTCCGAGGCTTTTCTGTGCTGGAGATTTCAGTGTCCATCT  220

seq1  GGACCTGGCTTCTTCAACTCAGGCCACC-TTCTGTGACTGACTTGACAGG  299
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGACCTGGCTTCTTCAACTCAGGCCACCTTTCTGTGACTGACTTGACAGG  270

seq1  AAGGGCACCATGAGCTGTTATCAGCTTCTCAGAGGTCTCCTTCCACGGTG  349
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGGGCACCATGAGCTGTTATCAGCTTCTCAGAGGTCT-CTTCCACGGTG  319

seq1  CCAACATCTCATGTACTCTGTCTACAACCAACTCTTTCTGTCCTTTGGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATCTCATGTACTCTGTCTACAACCAACTCTTTCTGTCCTTTGGTG  369

seq1  ACAGTTGAGCCTCCTTTCTGTGAACAATGGCTGGTAGTTTTAGGCCCAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGAGCCTCCTTTCTGTGAACAATGGCTGGTAGTTTTAGGCCCAAA  419

seq1  TGCCCAGCTATGCTGGGCAGGGTCAGAGCCTCTAATTTCCACACACTCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGCTATGCTGGGCAGGGTCAGAGCCTCTAATTTCCACACACTCTG  469

seq1  GGAAAAGGGTGACAGATGCTGTATCAGCCACTGGGGCACAGTTGATCATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGGTGACAGATGCTGTATCAGCCACTGGGGCACAGTTGATCATG  519

seq1  AATGGGCTGTGGTACTTGCCTGCCAACTGTCCCAGTCCTACTTCACATCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGCTGTGGTACTTGCCTGCCAACTGTCCCAGTCCTACTTCACATCA  569

seq1  CAGTTCTGGGAAGTATTCTGCCTCGGACACTGCTACACACACTCCAGTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTGGGAAGTATTCTGCCTCGGACACTGCTACACACACTCCAGTGA  619

seq1  AGTGTGCTTGGCAGGCCAAGAGGCCTGGAAGCACTCACGAGGCAAAGAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCTTGGCAGGCCAAGAGGCCTGGAAGCACTCACGAGGCAAAGAGT  669

seq1  TTCACTGAAACTCACCTCCTGGAGCTTTGAAGTTCTCATTAACCCGAATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGAAACTCACCTCCTGGAGCTTTGAAGTTCTCATTAACCCGAATA  719

seq1  CTCATACTCTATCCCCGTGTTAGTCTAGTGTATGGATCCATGTGCTCTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACTCTATCCCCGTGTTAGTCTAGTGTATGGATCCATGTGCTCTCT  769

seq1  TTTAGTATTATTTTATTATAAGTGCCTTTAAGATTGAATTCTGACATAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTATTATTTTATTATAAGTGCCTTTAAGATTGAATTCTGACATAGT  819

seq1  TAAGCCTCCCACCAGTGTTCCAATGTGCCAGAAGGGACGAGTTTGGAATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTCCCACCAGTGTTCCAATGTGCCAGAAGGGACGAGTTTGGAATC  869

seq1  CGTTATGAATGCAGTAAGGAAGTTACCTATTCAGTAACTAATTAAGCATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTATGAATGCAGTAAGGAAGTTACCTATTCAGTAACTAATTAAGCATT  919

seq1  ACAGAAGACAGAACCAGCAGCTCAGGGTTGGTCTGCAGAGTATTTACTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGACAGAACCAGCAGCTCAGGGTTGGTCTGCAGAGTATTTACTAA  969

seq1  GGACAGTAGCAAATCTCACCCAAACAAGGGAATACCATGAAAGAGCCAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTAGCAAATCTCACCCAAACAAGGGAATACCATGAAAGAGCCAGG  1019

seq1  GAATCCCACTGAGATAGAAATCTTCAGTACAGACTACATTGCATATTAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCACTGAGATAGAAATCTTCAGTACAGACTACATTGCATATTAAA  1069

seq1  AGCAAGTTGGTGAATTC  1116
      |||||||||||||||||
seq2  AGCAAGTTGGTGAATTC  1086

seq1: chr7_4973669_4974778
seq2: B6Ng01-117N20.g_67_1175

seq1  GAATTCAGATTCTCAGCACTTACATAAACAAACAAACAAACAAACAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTCTCAGCACTTACATAAACAAACAAACAAACAAACAAAAC  50

seq1  CTGGGCATGCTGGCACATGCCTGTAAGCCTGTAATGCCAGCACTGGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCATGCTGGCACATGCCTGTAAGCCTGTAATGCCAGCACTGGGAAG  100

seq1  ACAGAGACAGGAGGATTCCTGGAGCTCACTGCCTAGCTCCAGATTCAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACAGGAGGATTCCTGGAGCTCACTGCCTAGCTCCAGATTCAATG  150

seq1  AAAGACTGTCTCAAAGAAAGGAGGAAAGGAGGAGAACACAGTTGAGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGTCTCAAAGAAAGGAGGAAAGGAGGAGAACACAGTTGAGGCCA  200

seq1  CATGACACTGGCCTCTGGCCTCCACACCCTCACATGCAATCATACACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACACTGGCCTCTGGCCTCCACACCCTCACATGCAATCATACACCAC  250

seq1  ACACAAAATGAGAACACCCGAGGACAGTTATAGGGGCTAGGATATCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAATGAGAACACCCGAGGACAGTTATAGGGGCTAGGATATCAAAA  300

seq1  ATACTACGTGTGGACTGTCTCACGCCATCTTGTTCCTCAGGTAAAGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACGTGTGGACTGTCTCACGCCATCTTGTTCCTCAGGTAAAGCCCA  350

seq1  GAGCAGAGAGTTTGGTCCTAGACTGCTGTGGCCCACCACGGAGGCTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAGAGTTTGGTCCTAGACTGCTGTGGCCCACCACGGAGGCTGCTC  400

seq1  TGACAGCTTCCTCGCCTTGCGGGTGGAATGAAGAAGAGTAGGAGCTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCTTCCTCGCCTTGCGGGTGGAATGAAGAAGAGTAGGAGCTGTGA  450

seq1  ACTTTACTAGCCTCACGCCTTCTTTCAGCCCGCTTGCCCCGCCTCATTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACTAGCCTCACGCCTTCTTTCAGCCCGCTTGCCCCGCCTCATTGC  500

seq1  TTCACTTATTCAGGAATACTTAGCAAGCAGCCAGCAAGATGGCTGCGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTATTCAGGAATACTTAGCAAGCAGCCAGCAAGATGGCTGCGCAG  550

seq1  GCCAACACTGAAGCCTGATAGCCTGAGTCCAGTCTGCAGAACCCATGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACACTGAAGCCTGATAGCCTGAGTCCAGTCTGCAGAACCCATGTGG  600

seq1  TGGGAGGAGAGCACTCACTCGTGCAGGTTTCCTCTCACCTCTACATATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGAGAGCACTCACTCGTGCAGGTTTCCTCTCACCTCTACATATGT  650

seq1  GCACACACAATACAGATGGACACCAGAAATAAGTGCCTTTTTTATTTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACAATACAGATGGACACCAGAAATAAGTGCCTTTTTTATTTGGG  700

seq1  AAAAAGAGAAGATAGGGATTAGCAAGCTAGGTACTGTCCTAGGTCCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGAAGATAGGGATTAGCAAGCTAGGTACTGTCCTAGGTCCTGAG  750

seq1  GACAGTTCAGAACAACGCCGGCCGGGGCTGTGGAGATGGCTTAGTGACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTCAGAACAACGCCGGCCGGGGCTGTGGAGATGGCTTAGTGACTA  800

seq1  AGCATCTGCTATGGAAACATGGGGATCAGAGTTCAGATTCCCGAGCCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTGCTATGGAAACATGGGGATCAGAGTTCAGATTCCCGAGCCCAT  850

seq1  CTGAATGCCAGCCAGTTA-GGAGGTCCACCTGTCACTCTAGTCTCTGAGG  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTGAATGCCAGCCAGTTAGGGAGGTCCACCTGTCACTCTAGTCTCTGAGG  900

seq1  GCAGAAACAGGATCCCCACAACAATCTGGCTAACGAGACTAGCCATATCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAACAGGATCCCCACAACAATCTGGCTAACGAGACTAGCCATATCT  950

seq1  GTGAGCTCTGAGTTTGATTGAGAGACCCTGCTCAATGAATACTGCGGAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTCTGAGTTTGATTGAGAGACCCTGCTCAATGAATACTGCGGAAG  1000

seq1  AGAGAGTGAGGATCATTCCTAGCGTCAGCCTTGAGTCTGCAACATGCACA  1049
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  AGAGAGTGAGGATCATTCCTAGCGTCAG-CTTGAGTCTGC-ACATGCACA  1048

seq1  CATGTGC-GTATACA-TGTGAGAAATGAAAAAGGGGAAAAAATATCGTGG  1097
      ||||||| ||||||| |||||| |||| |||||||||||||||||| |||
seq2  CATGTGCGGTATACATTGTGAG-AATG-AAAAGGGGAAAAAATATCCTGG  1096

seq1  CA-TCAGAGAGGGA  1110
      || ||||| |||||
seq2  CATTCAGA-AGGGA  1109