BAC Information

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BAC

Clone NameB6Ng01-118F20
Chromosome7 (Build37)
Map Location 17,341,618 - 17,452,604
singlet/doubletdoublet
Overlap geneSlc1a5, Fkrp, Strn4, Prkd2
Upstream geneObox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1
Downstream geneDact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118F20.bB6Ng01-118F20.g
ACCDH922864DH922865
length1,214979
definitionDH922864|Mus musculus domesticus DNA, BAC clone: B6Ng01-118F20, 5' end.DH922865|Mus musculus domesticus DNA, BAC clone: B6Ng01-118F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,341,618 - 17,342,879)(17,452,066 - 17,452,604)
sequence
gaattccagtttgaccagattcgaggtccctgtggggaaagtgacctctc
caggctgtggtggtcaagggagtagcctgggctattgtcatgaaatggca
cccctacccccaaaggaaaaagatcccagacaacctcccagtaagcatct
tgacttctcaccttcacttcctctcgtcctgtaaactgattttttttcct
acagtcgttattctgctttcccaagttaagttatataaaaggtacgctca
ggctggagcgatggctcagcagttgctcacaactgtctgtagttccaata
tctgatatcattacacaaacttatgtgcaggcaaaaaaccaatacagata
aaataaaaataagttgtttttttttttttttaaaaaggtgccctcaaagt
aacctgctgtgcatacatgaagacaggagttcagatctctcacacccatg
gaaacagtggatatcactgggtaaaggcatttgtccccaaacctaatgac
atgagtttaatccccagaacctgtaaatgggtggaggaagaaaaccaatt
ccttcaaattatcccctggccacggcactcacaccaaggtactcacatca
tagcactcacaccaagacactcacaccaaggcactcactccacagcactc
acaccaagacactcactccacagcactcacaccaagtcattcacaccaca
acactcacaccaaggcactcacaccactcacaccaaggtactcatttcat
agcactcacaccaagacactcacaccaaggcactcactccacagcactca
caccaaggcactcacaccaaggcactcactccaacgtactcacatcacag
caatcacaccaaggtactcacatcacagcactcacaccaagctactcaca
tcacaggactcacaccaagtcactcacaccacagcactcacaccaagtac
tcacaccacagcactcacaccaaggcacttactctaaggtactcacacca
cagcactcacaccaagtactcacaccaggcactacactacatacacacac
taaataatatagtgtacaaaaaaagtggttttttggtttttgaattttaa
aggttctaataatatattaggtaacaagctgcttcaaacctcgaaagagg
catcgaaatcatagatgtgggaccatggttcggatgaaccgacctgaaaa
cagtcaggttctta
gaattccaaactacacaccgtgattaaaacttgagtctcagctaggtctg
gtggctcccaggcctgccatcccagctactgtccaatacctaactgaaca
acaagatgagttcaaagccagcctgggcaatctagtgagaccctgcctca
aactacaacacaacaacggggctggggatacagcttagtcaaagagaact
tcatcatgcatgagaccctaggctcaagccttactgttgcaaaagaaaaa
caataccaaggaccagacttggggctggagagatggctcagcaggttaag
agcactgactgctcttccagaggtcctgagttcaattcccagcaaccaca
tggtggctcacaacaatctgtaatgggctctgtcatgctcttctggtgtg
tctgaagacagctacagtgtacttataaataccactttctgctcttgctg
aggatatgggttcaagtcccagcacacacatggtggctcacaaccataac
tagtaaaaaccagttgtaagggatctaatgcccttttctgacctcctctg
tcaccaggcacacatgtatacaggcaggcaaaacactgacacacataaaa
taaattaaagaaaggaaggaaggaaggaaggaaggaaggaaggaaggaag
gaaggaaggaaggaaggaaggaaggaaggaagacagatagacagacggag
cagctgacctggaactggagagatggctcagtggttaagagcactggctg
ctcttccaaggatttgggttaagttcccagcacctacacggaggctcaca
actgcctgtaattttagttccaggagatcggacacttttctggccttcag
gagcacatggtgcacatacatacatgcagacaaaatacccatacacacga
aataaagtaagcacaaccaaattaaaagaaaagaaagagtctaccctgtt
ctgtacgtgttctagagcattcagcacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_17341618_17342879
seq2: B6Ng01-118F20.b_48_1261

seq1  GAATTCCAGTTTGACCAGATTCGAGGTCCCTGTGGGGAAAGTGACCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTTGACCAGATTCGAGGTCCCTGTGGGGAAAGTGACCTCTC  50

seq1  CAGGCTGTGGTGGTCAAGGGAGTAGCCTGGGCTATTGTCATGAAATGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGTGGTGGTCAAGGGAGTAGCCTGGGCTATTGTCATGAAATGGCA  100

seq1  CCCCTACCCCCAAAGGAAAAAGATCCCAGACAACCTCCCAGTAAGCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACCCCCAAAGGAAAAAGATCCCAGACAACCTCCCAGTAAGCATCT  150

seq1  TGACTTCTCACCTTCACTTCCTCTCGTCCTGTAAACTGATTTTTTTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCTCACCTTCACTTCCTCTCGTCCTGTAAACTGATTTTTTTTCCT  200

seq1  ACAGTCGTTATTCTGCTTTCCCAAGTTAAGTTATATAAAAGGTACGCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCGTTATTCTGCTTTCCCAAGTTAAGTTATATAAAAGGTACGCTCA  250

seq1  GGCTGGAGCGATGGCTCAGCAGTTGCTCACAACTGTCTGTAGTTCCAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGCGATGGCTCAGCAGTTGCTCACAACTGTCTGTAGTTCCAATA  300

seq1  TCTGATATCATTACACAAACTTATGTGCAGGCAAAAAACCAATACAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATATCATTACACAAACTTATGTGCAGGCAAAAAACCAATACAGATA  350

seq1  AAATAAAAATAAGTTGTTTTTTTTTTTTTTTAAAAAGGTGCCCTCAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAATAAGTTGTTTTTTTTTTTTTTTAAAAAGGTGCCCTCAAAGT  400

seq1  AACCTGCTGTGCATACATGAAGACAGGAGTTCAGATCTCTCACACCCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCTGTGCATACATGAAGACAGGAGTTCAGATCTCTCACACCCATG  450

seq1  GAAACAGTGGATATCACTGGGTAAAGGCATTTGTCCCCAAACCTAATGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGTGGATATCACTGGGTAAAGGCATTTGTCCCCAAACCTAATGAC  500

seq1  ATGAGTTTAATCCCCAGAACCTGTAAATGGGTGGAGGAAGAAAACCAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTTAATCCCCAGAACCTGTAAATGGGTGGAGGAAGAAAACCAATT  550

seq1  CCTTCAAATTATCCCCTGGCCACGGCACTCACACCAAGGTACTCACATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAATTATCCCCTGGCCACGGCACTCACACCAAGGTACTCACATCA  600

seq1  TAGCACTCACACCAAGACACTCACACCAAGGCACTCACTCCACAGCACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTCACACCAAGACACTCACACCAAGGCACTCACTCCACAGCACTC  650

seq1  ACACCAAGACACTCACTCCACAGCACTCACACCAAGTCATTCACACCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAGACACTCACTCCACAGCACTCACACCAAGTCATTCACACCACA  700

seq1  ACACTCACACCAAGGCACTCACACCACTCACACCAAGGTACTCATTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACACCAAGGCACTCACACCACTCACACCAAGGTACTCATTTCAT  750

seq1  AGCACTCACACCAAGACACTCACACCAAGGCACTCACTCCACAGCACTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCACACCAAGACACTCACACCAAGGCACTCACTCCACAGCACTCA  800

seq1  CACCAAGGCACTCACACCAAGGCACTCACTCCAACGTACTCACATCACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGGCACTCACACCAAGGCACTCACTCCAACGTACTCACATCACAG  850

seq1  CAATCACACCAAGGTACTCACATCACAGCACTCACACCAAGCTACTCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACACCAAGGTACTCACATCACAGCACTCACACCAAGCTACTCACA  900

seq1  TCACAGGACTCACACCAAGTCACTCACACCACAGCACTCACACCAAGGTA  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCACAGGACTCACACCAAGTCACTCACACCACAGCACTCACACCAA-GTA  949

seq1  CTCACACCACAGCACTCACACCAAGGCACTTACTCTAAGGTACTCACACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACCACAGCACTCACACCAAGGCACTTACTCTAAGGTACTCACACC  999

seq1  ACAGCACTCACACCAAGGTACTCACACCAAGGCACTTACACTACATACAC  1050
      |||||||||||||||| ||||||||||| |||||| ||||||||||||||
seq2  ACAGCACTCACACCAA-GTACTCACACC-AGGCAC-TACACTACATACAC  1046

seq1  ACACTAAATTAAATATAAGTGTACAAAAAAAGTGGTTTTTTTTGTTTTTT  1100
      |||||||||  ||||| ||||||||||||||||||  ||||||| |||||
seq2  ACACTAAAT--AATAT-AGTGTACAAAAAAAGTGG--TTTTTTGGTTTTT  1091

seq1  TAAAATTTTTTAAAGTTTCTTTATTATTATATCTAAGTACACTATAGCTG  1150
       ||    |||||||| |||  || || ||||| || ||| ||   |||||
seq2  GAA----TTTTAAAGGTTC--TAATAATATAT-TAGGTA-AC--AAGCTG  1131

seq1  TCTTCAGACACTCAGAAGAGGGCATCAGATATCATTAGGGATGGTTGTGA  1200
       ||||| || |||  |||| |||||| || |||       || | |||| 
seq2  -CTTCAAAC-CTCGAAAGA-GGCATC-GAAATC-------ATAGATGTGG  1170

seq1  GCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAAAAACAG  1250
      |  ||||||     | | |||  |||||    |||||      |||||||
seq2  G--ACCATG-----GTTCGGA--TGAAC---CGACCT-----GAAAACAG  1203

seq1  TCAGTGTTCTTA  1262
      |||| |||||||
seq2  TCAG-GTTCTTA  1214

seq1: chr7_17452066_17452604
seq2: B6Ng01-118F20.g_68_606 (reverse)

seq1  AGAAAAGGGCATTAGATCCCTTACAACTGGTTTTTACTAGTTATGGTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGGCATTAGATCCCTTACAACTGGTTTTTACTAGTTATGGTTGT  50

seq1  GAGCCACCATGTGTGTGCTGGGACTTGAACCCATATCCTCAGCAAGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACCATGTGTGTGCTGGGACTTGAACCCATATCCTCAGCAAGAGCA  100

seq1  GAAAGTGGTATTTATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGTATTTATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAG  150

seq1  AGCATGACAGAGCCCATTACAGATTGTTGTGAGCCACCATGTGGTTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGACAGAGCCCATTACAGATTGTTGTGAGCCACCATGTGGTTGCTG  200

seq1  GGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCTGCT  250

seq1  GAGCCATCTCTCCAGCCCCAAGTCTGGTCCTTGGTATTGTTTTTCTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCTCTCCAGCCCCAAGTCTGGTCCTTGGTATTGTTTTTCTTTTG  300

seq1  CAACAGTAAGGCTTGAGCCTAGGGTCTCATGCATGATGAAGTTCTCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTAAGGCTTGAGCCTAGGGTCTCATGCATGATGAAGTTCTCTTTG  350

seq1  ACTAAGCTGTATCCCCAGCCCCGTTGTTGTGTTGTAGTTTGAGGCAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGCTGTATCCCCAGCCCCGTTGTTGTGTTGTAGTTTGAGGCAGGGT  400

seq1  CTCACTAGATTGCCCAGGCTGGCTTTGAACTCATCTTGTTGTTCAGTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTAGATTGCCCAGGCTGGCTTTGAACTCATCTTGTTGTTCAGTTAG  450

seq1  GTATTGGACAGTAGCTGGGATGGCAGGCCTGGGAGCCACCAGACCTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGACAGTAGCTGGGATGGCAGGCCTGGGAGCCACCAGACCTAGCT  500

seq1  GAGACTCAAGTTTTAATCACGGTGTGTAGTTTGGAATTC  539
      |||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCAAGTTTTAATCACGGTGTGTAGTTTGGAATTC  539