BAC Information

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BAC

Clone NameB6Ng01-118M05
Chromosome7 (Build37)
Map Location 20,189,992 - 20,337,249
singlet/doubletdoublet
Overlap geneRelb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2
Upstream genePsg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16
Downstream geneBcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118M05.bB6Ng01-118M05.g
ACCDH923157DH923158
length6391,118
definitionDH923157|Mus musculus domesticus DNA, BAC clone: B6Ng01-118M05, 5' end.DH923158|Mus musculus domesticus DNA, BAC clone: B6Ng01-118M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,189,992 - 20,190,629)(20,336,121 - 20,337,249)
sequence
gaattccagacacgttttgttgttgtttttaaagatttatttcttttagg
ggctggagtggtgacaatcgattgagaactggaagctctcgccaaggtcc
tgagtttaattgcccgcactcacatagggctcacaaccagtctctttttt
tttttttttttttttaaagatttatttatttattatatgtaagtacactg
tagctgtcttcagacattccagaagagggagtcagatctcattacagatg
gttgtgagccaccatgtggttgctgggatttgaactctggaccttcggaa
gagcagtcgggtgctcttacccactgagccatctcaccagcccaacaacc
agtctcttaactgtagtcctatgggatccagtgccctattctgatgtgca
tacatgccgagaaaacacccatatgcataaaatacaaaaatagaaaagtc
tttttaaaagatttatattgccggacagtggtggcacacgccttttaatc
ccagcacttgggaggcagaggcaggtagatttctgatttcgaggccagcc
tggtctacaaagtgagttccaggacagcccagggttacacagagaaaccc
tgtctcggaaaaaaaatattaagtgtatgcctgaaggtg
gaattccaaacgccacacagtcgcagaaactatacgtggctgacaaaaat
cacacctctgctggagcacgaggcaaatcataaccagctgctgcagacaa
tctgaaggattaaaatgaaacattgtcataatacttctgtgctttttaaa
ggaaccaaaatctcaaacttgtcgctacaataatcctttcctccccaagt
tgcttttcttgtcacagtgtttcattgcagttatggaaagcctgagtaag
acactctgtcttgggaaaaaaaaaaaaaaagttggaagctacagagcatt
tactcagtgtctgtcatttataccactagcctcatgccacgttccttgca
aacctgagatattatctggatgtcatgttgcatagctactataaacacca
acaaacctcacactgctccttctctggcggtggtttggaaagaacctgtg
ccttagtttacttttcacacacggtgaccctcacgtggtgatcgtcgctg
attagaactgggtctgtagaccacagtggcttggaattctgtgagatctt
tctgtttctgccacctaagtactgggattacagttgtgcagcaccaaccc
gacccccttcctaagattcttgtgagcaacaaaagaattttgaatagtgt
ccattgtggacctgcctcttttcataaccctgacctttggcaccaagcca
ctttcccttcccatgactcagttccccttccttctccacggcttgatcgg
ggactgcttgggagaagacttacacgagggcctggtgggcagacaaagct
aaaaccctttatcaacaatgttgttaaagggtgtggcaacagctcagaaa
ggagagagctagctcaacttggagtcagtgcatgcctacaatccctggct
ggttagccaggacgacaggagatgccatctcataaaacaaaccaaggtgg
gtggatggcttcaaaggttgtgccacaaacttggctacgtgagttggggc
cccggcacccacttgctgcttccacttcaagcagttgttatttgccttag
aagtcagcacggcttgcacaccacaaattatcagcaagccaacaataggg
agcattacaagagtggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_20189992_20190629
seq2: B6Ng01-118M05.b_43_681

seq1  GAATTCCAGACACGTTTTGTTGTTGTTTTTAAAGATTTATTTCTTTTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACACGTTTTGTTGTTGTTTTTAAAGATTTATTTCTTTTAGG  50

seq1  GGCTGGAGTGGTGACAATCGATTGAGAACTGGAAGCTCTCGCCAAGGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGTGGTGACAATCGATTGAGAACTGGAAGCTCTCGCCAAGGTCC  100

seq1  TGAGTTTAATTGCCCGCACTCACATAGGGCTCACAACCAGTCTCTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTAATTGCCCGCACTCACATAGGGCTCACAACCAGTCTCTTTTTT  150

seq1  TTTTTTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTG  200

seq1  TAGCTGTCTTCAGACATTCCAGAAGAGGGAGTCAGATCTCATTACAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTCTTCAGACATTCCAGAAGAGGGAGTCAGATCTCATTACAGATG  250

seq1  GTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAA  300

seq1  GAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCAACAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCAACAACC  350

seq1  AGTCTCTTAACTGTAGTCCTATGGGATCCAGTGCCCTATTCTGATGTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTTAACTGTAGTCCTATGGGATCCAGTGCCCTATTCTGATGTGCA  400

seq1  TACATGCCGAGAAAACACCCATATGCATAAAATACAAAAATAGAAAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCCGAGAAAACACCCATATGCATAAAATACAAAAATAGAAAAGTC  450

seq1  TTTTTAAAAGATTTATATTGCCGGACAGTGGTGGCACACGCCTTTTAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAGATTTATATTGCCGGACAGTGGTGGCACACGCCTTTTAATC  500

seq1  CCAGCACTTGGGAGGCAGAGGCAGGTAGATTTCTGAGTTCGAGGCCAGCC  550
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCAGCACTTGGGAGGCAGAGGCAGGTAGATTTCTGATTTCGAGGCCAGCC  550

seq1  TGGTCTACAAAGTGAGTTCCAGGACAG-CCAGGGCTACACAGAGAAACCC  599
      ||||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  TGGTCTACAAAGTGAGTTCCAGGACAGCCCAGGGTTACACAGAGAAACCC  600

seq1  TGTCTCGGAAAAAAAATATTATGTGTATGCCTGAAGGTG  638
      ||||||||||||||||||||| |||||||||||||||||
seq2  TGTCTCGGAAAAAAAATATTAAGTGTATGCCTGAAGGTG  639

seq1: chr7_20336121_20337249
seq2: B6Ng01-118M05.g_68_1185 (reverse)

seq1  TTCCACTCTTGTTAATGCTCCTATTTGTTTGCTTGCTGATTATTTTGTGT  50
      ||||||||||| |||||||||   ||||| ||||||||| || |||||| 
seq2  TTCCACTCTTG-TAATGCTCCCTATTGTTGGCTTGCTGA-TAATTTGTG-  47

seq1  GTGTGCAGGCCGTGCTGACTTCTGAAGGGCAAATAACAACTTGCTTTGAG  100
      ||||||| |||||||||||||||  | ||||||||||||| ||| |||| 
seq2  GTGTGCAAGCCGTGCTGACTTCT--AAGGCAAATAACAAC-TGC-TTGAA  93

seq1  TTGGAAGCAGCAAGTGGGTGCCGGGGCCCCAACTCACGTAGCCAAGTTTG  150
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTGGAAGCAGCAAGTGGGTGCCGGGGCCCCAACTCACGTAGCCAAGTTT-  142

seq1  GTGGCACAACCTTTGAAGCCATTCCACCCACCTTGGTTTTGTTTTATGAG  200
      ||||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  GTGGCACAACCTTTGAAGCCA-TCCACCCACCTTGG-TTTGTTTTATGAG  190

seq1  ATGGCATCTCCTGTCGTCCTGGCTAACCAGCCAGGGATTGTAGGCATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATCTCCTGTCGTCCTGGCTAACCAGCCAGGGATTGTAGGCATGCA  240

seq1  CTGACTCCAAGTTGAGCTAGCTCTCTCCTTTCTGAGCTGTTGCCACACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGACTCCAAGTTGAGCTAGCTCTCTCCTTTCTGAGCTGTTGCCACA-CC  289

seq1  CTTTAACAACATTGTTGATAAAGGGTTTTAGCTTTGTCTGCCCACCAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACAACATTGTTGATAAAGGGTTTTAGCTTTGTCTGCCCACCAGGC  339

seq1  CCTCGTGTAAGTCTTCTCCCAAGCAGTCCCCGATCAAGCCGTGGAGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTGTAAGTCTTCTCCCAAGCAGTCCCCGATCAAGCCGTGGAGAAGG  389

seq1  AAGGGGAACTGAGTCATGGGAAGGGAAAGTGGCTTGGTGCCAAAGGTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAACTGAGTCATGGGAAGGGAAAGTGGCTTGGTGCCAAAGGTCAG  439

seq1  GGTTATGAAAAGAGGCAGGTCCACAATGGACACTATTCAAAATTCTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATGAAAAGAGGCAGGTCCACAATGGACACTATTCAAAATTCTTTTG  489

seq1  TTGCTCACAAGAATCTTAGGAAGGGGGTCGGGTTGGTGCTGCACAACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCACAAGAATCTTAGGAAGGGGGTCGGGTTGGTGCTGCACAACTGT  539

seq1  AATCCCAGTACTTAGGTGGCAGAAACAGAAAGATCTCACAGAATTCCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGTACTTAGGTGGCAGAAACAGAAAGATCTCACAGAATTCCAAG  589

seq1  CCACTGTGGTCTACAGACCCAGTTCTAATCAGCGACGATCACCACGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTGGTCTACAGACCCAGTTCTAATCAGCGACGATCACCACGTGAG  639

seq1  GGTCACCGTGTGTGAAAAGTAAACTAAGGCACAGGTTCTTTCCAAACCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCGTGTGTGAAAAGTAAACTAAGGCACAGGTTCTTTCCAAACCAC  689

seq1  CGCCAGAGAAGGAGCAGTGTGAGGTTTGTTGGTGTTTATAGTAGCTATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGAGAAGGAGCAGTGTGAGGTTTGTTGGTGTTTATAGTAGCTATGC  739

seq1  AACATGACATCCAGATAATATCTCAGGTTTGCAAGGAACGTGGCATGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGACATCCAGATAATATCTCAGGTTTGCAAGGAACGTGGCATGAGG  789

seq1  CTAGTGGTATAAATGACAGACACTGAGTAAATGCTCTGTAGCTTCCAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGGTATAAATGACAGACACTGAGTAAATGCTCTGTAGCTTCCAACT  839

seq1  TTTTTTTTTTTTTTCCCAAGACAGAGTGTCTTACTCAGGCTTTCCATAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTCCCAAGACAGAGTGTCTTACTCAGGCTTTCCATAAC  889

seq1  TGCAATGAAACACTGTGACAAGAAAAGCAACTTGGGGAGGAAAGGATTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGAAACACTGTGACAAGAAAAGCAACTTGGGGAGGAAAGGATTAT  939

seq1  TGTAGCGACAAGTTTGAGATTTTGGTTCCTTTAAAAAGCACAGAAGTATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCGACAAGTTTGAGATTTTGGTTCCTTTAAAAAGCACAGAAGTATT  989

seq1  ATGACAATGTTTCATTTTAATCCTTCAGATTGTCTGCAGCAGCTGGTTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATGTTTCATTTTAATCCTTCAGATTGTCTGCAGCAGCTGGTTAT  1039

seq1  GATTTGCCTCGTGCTCCAGCAGAGGTGTGATTTTTGTCAGCCACGTATAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCCTCGTGCTCCAGCAGAGGTGTGATTTTTGTCAGCCACGTATAG  1089

seq1  TTTCTGCGACTGTGTGGCGTTTGGAATTC  1129
      |||||||||||||||||||||||||||||
seq2  TTTCTGCGACTGTGTGGCGTTTGGAATTC  1118