BAC Information

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BAC

Clone NameB6Ng01-118O11
Chromosome7 (Build37)Y (Build37)
Map Location 93,029,921 - 93,030,9492,652,627 - 2,652,692
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928
Downstream geneEG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118O11.bB6Ng01-118O11.g
ACCDH923260DH923261
length1,179982
definitionDH923260|Mus musculus domesticus DNA, BAC clone: B6Ng01-118O11, 5' end.DH923261|Mus musculus domesticus DNA, BAC clone: B6Ng01-118O11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,029,921 - 93,030,949)(2,652,627 - 2,652,692)
sequence
gaattctttgcttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagatatatatatatatatatatatatatat
atatatatatatatatatatatatattggatattagtcccctatttgatt
taggataggtaaagatcctttcccaatctgttggtggcctttttgtctta
ttgacagtgtcttttgccttgcaaaagctttgcagtttcatgaggtccca
tttgtcagttctcaatcttacagcccaagccattgctgttctattcagga
atttttcccctgtgcccatatcttcgagggtttcccccaatttctcctct
ataagtttcagtgtctccggttttatgtggagctccttgatccacttaga
ttgaacttagtataaggagatgggaatggatcgatttacattcttctaca
tgataacagccaattgtgccagcaccatttgttgaaaatgctgtctttct
tccactggatggttttagctcccttgtcgaagatcaagtgaccataggtg
tgtgggttcatttctgggtcttcaattatattttattggtctacttgtct
gtcactataacagtaccgtgcagtttttatcacaattgctctgtagtaaa
gctttctttctattcctacatttctcatccacaaaactttgggtccataa
ttttttacatctatgaaacctttttgctgtaaaaatatttagggtaagtg
atcatttaatgaaagaccatcccattatttgtgtttggattatattaaaa
ataaaaatctttctttcctagggtctaatttttctttcattaataccaat
gatggaattgtatatgcaggtctcatcttcacattgggatgtgttctttc
ttagatttgcaatgctttgttttcctggaaagtccctaggataaacctaa
gtttagaggctcacaagaggttcagtcagacagagcagaaaaactacata
atgttaaacacatggtgaagaggcaagaacaagaaactaaatgaaagaac
caggctatttggcatcacaggaacccagttctcccataaaaggcaggctc
tgaattcacaacaaacctggaaagcagattattaaaatctcatttttata
ttattttttgtgagggttaggaatcagag
gaattcatgcagttgaatccttctcaacagtctgtgttgtgggaacactt
cataaccgtgacccgcagttctggttccggaatgagggatcttccttgca
ccggtgatggtaaactctcgtcccgagttttttctcgtcccggaattcgg
caccaattgttattaacgcgttctcacgcccggccaggaagaacacagca
aaccagaatcttctgcggcaaaactttattgcttacatcttcaggagcaa
gagtgtaagaagcaagagagagagaaaacgaaaccccgtccctattaagg
agaattatccttcgcctaggacgtgtcactccctgattggctgcagccca
tcggccgagttgacgtcacggggaaggcagagcacatggagtggagaacc
accctcggcacatgcgcagattatttgtttaccacttagaacacagctgt
cagcgccatcttgtaacggcgaatgtgggcgcggctcccaacaattgata
aatgggaactcatgagactgaacagatttgtaaggcaaaatcacagtcaa
tagaacaaattaacacctacagattgggaaattatctccaataaccctat
aactgatagagggctaacatccaaaatatataaagaaatcaagaagttga
cctccaaaaataaataatccattttaaaaatggagttcagagctaagcag
agaattaacaacagaagaaccttgaatggcagaggagcatctaaacaagt
gttcaaattccgtagtcattagttaaaaacaaataaaaaagaccctgtga
ttccacgtcacaccaataagagtggctaagataaaaacttcaagttactg
cacatgctggcaaggatgtggagaaaagttatactcttctattactactt
gaattgtatacttctgcaagcacactagaaagaatttgccatttctttag
aaagttgaaaatagtctacttgaaaacccagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_93029921_93030949
seq2: B6Ng01-118O11.b_208_1228

seq1  GTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGT  50

seq1  GTCTTTTGCCTTGCAAAAGCTTTGCAGTTTCATGAGGTCCCATTTGTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTGCCTTGCAAAAGCTTTGCAGTTTCATGAGGTCCCATTTGTCAG  100

seq1  TTCTCAATCTTACAGCCCAAGCCATTGCTGTTCTATTCAGGAATTTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATCTTACAGCCCAAGCCATTGCTGTTCTATTCAGGAATTTTTCC  150

seq1  CCTGTGCCCATATCTTCGAGGGTTTCCCCCAATTTCTCCTCTATAAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCCCATATCTTCGAGGGTTTCCCCCAATTTCTCCTCTATAAGTTT  200

seq1  CAGTGTCTCCGGTTTTATGTGGAGCTCCTTGATCCACTTAGATTGAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTCCGGTTTTATGTGGAGCTCCTTGATCCACTTAGATTGAACTT  250

seq1  AGTATAAGGAGATGGGAATGGATCGATTTACATTCTTCTACATGATAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAGGAGATGGGAATGGATCGATTTACATTCTTCTACATGATAACA  300

seq1  GCCAATTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTCTTCCACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTCTTCCACTGG  350

seq1  ATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGTGGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGTGGGTT  400

seq1  CATTTCTGGGTCTTCAATTATATTTTATTGGTCTACTTGTCTGTCACTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTGGGTCTTCAATTATATTTTATTGGTCTACTTGTCTGTCACTAT  450

seq1  AACAGTACCGTGCAGTTTTTATCACAATTGCTCTGTAGTAAAGCTTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTACCGTGCAGTTTTTATCACAATTGCTCTGTAGTAAAGCTTTCTT  500

seq1  TCTATTCCTACATTTCTCATCCACAAAACTTTGGGTCCATAATTTTTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCCTACATTTCTCATCCACAAAACTTTGGGTCCATAATTTTTTAC  550

seq1  ATCTATGAAACCTTTTTGCTGTAAAAATATTTAGGGTAAGTGATCATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGAAACCTTTTTGCTGTAAAAATATTTAGGGTAAGTGATCATTTA  600

seq1  ATGAAAGACCATCCCATTATTTGTGTTTGGATTATATTAAAAAATAAAAA  650
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATGAAAGACCATCCCATTATTTGTGTTTGGATTATATT-AAAAATAAAAA  649

seq1  TCTTTCTTTCCTAGGGTCTAAATTTTCCTTTCATTAATACCAATGATGGA  700
      ||||||||||||||||||| |||||| |||||||||||||||||||||||
seq2  TCTTTCTTTCCTAGGGTCT-AATTTTTCTTTCATTAATACCAATGATGGA  698

seq1  ATTGTATATGCAGGTCTCATCTTCACATTGGGATGTGTTCTTTCTTAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATATGCAGGTCTCATCTTCACATTGGGATGTGTTCTTTCTTAGAT  748

seq1  TTGCAATGCTTTGTTTTTCCTGGTAAAGTCCCTAGGATAAACCTAAGTTT  800
      ||||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  TTGCAATGCTTTG-TTTTCCTGG-AAAGTCCCTAGGATAAACCTAAGTTT  796

seq1  AGAGGCTCACAAGAGGTTCCAGTCAGACAGAGCAAGAAAAACTAACATAA  850
      |||||||||||||||||| |||||||||||||| ||||||||| ||||||
seq2  AGAGGCTCACAAGAGGTT-CAGTCAGACAGAGC-AGAAAAACT-ACATAA  843

seq1  GAGATAAACACATGGTG-AGAGGCAAGACAAAGAACATAAGTGAAAGAAA  899
        | ||||||||||||| ||||||||||  |||||  ||| |||||| ||
seq2  -TGTTAAACACATGGTGAAGAGGCAAGAACAAGAAACTAAATGAAAG-AA  891

seq1  CCAGGCTATTTGGCATCACAAGAACCCAGTTCTCACATAACA-GCAAGCC  948
      |||||||||||||||||||| ||||||||||||| ||||| | ||| || 
seq2  CCAGGCTATTTGGCATCACAGGAACCCAGTTCTCCCATAAAAGGCAGGCT  941

seq1  CTGAATACCACAACACACCTGAAAAGCAAGATTATAAAATTCTCATTTAT  998
      ||||||  ||||||| ||||| ||||| ||||||| ||| |||||||| |
seq2  CTGAAT-TCACAACAAACCTGGAAAGC-AGATTATTAAAATCTCATTTTT  989

seq1  -TATTATTTTTTGTGAGGTTTAGGTATCAGAG  1029
       ||||||||||||||||| ||||| |||||||
seq2  ATATTATTTTTTGTGAGGGTTAGGAATCAGAG  1021

seq1: chrY_2652627_2652692
seq2: B6Ng01-118O11.g_477_541 (reverse)

seq1  TCGCCATTACAAGATGGCGCTGATATCCGGTGTTCTAACTGGTAAACAAA  50
      ||||| ||||||||||||||||| |  | ||||||||| |||||||||||
seq2  TCGCCGTTACAAGATGGCGCTGACA-GCTGTGTTCTAAGTGGTAAACAAA  49

seq1  TAGTCTGCGCATGTGC  66
      || |||||||||||||
seq2  TAATCTGCGCATGTGC  65