BAC Information

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BAC

Clone NameB6Ng01-119A10
Chromosome7 (Build37)
Map Location 130,171,002 - 130,313,545
singlet/doubletdoublet
Overlap geneTnrc6a
Upstream geneEars2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, Prkcb1, LOC668486, Cacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981
Downstream geneSlc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482, EG628779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119A10.bB6Ng01-119A10.g
ACCDH923345DH923346
length1,0801,191
definitionDH923345|Mus musculus domesticus DNA, BAC clone: B6Ng01-119A10, 5' end.DH923346|Mus musculus domesticus DNA, BAC clone: B6Ng01-119A10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,171,002 - 130,172,084)(130,312,338 - 130,313,545)
sequence
gaattctgtttagatttgtaaacattttttaattgtgttattttgtttct
tgatgtccagagattttttttgtttgtttgtttgtttggttggttggatt
ttgttgttgttattgttgttgttgctgttgctgttgttgttgttgctgct
gctgtttctgctgctgctgttggtagttgtttttagttctttctatatct
tagatagtaatcttctatgcgtgtataattggtaaagattattcctcatt
aaaatattttacatttatttgttttatggtatgtgtattagtgttttgcc
tgcatgtatgacctgcgcagcacgtgtgtgaccaatacccatgggattgg
atctccttgaactggagtcacctatgattgtgaccactgtgtgtgtgttg
ggaactgaaccagggtcatctggaagagcagccagtgctgctaaccactg
agccatctccccagcccccattccttatttttgttatgtctgggttataa
aagtagtatatattcaagcatcaaacaaacccacttggttattaataatc
atggaagatttaaaaaaagatttagttatttattttacatgtctgagtac
attgttgttgtctacagactcaccagaagagggcattggatcccattata
gatggttgtgaaccaccatgtggttgctaggaattgaactcaagacctca
ggaagagcactcagtgctttaaccactgagccacctctccagcctcatca
tggaaggttttttgtttgtttttgggttttggggtttttttgacccagaa
ttcaggtaaacttttgatgttttctgaggttgttagtcaggttcttcaga
gggatgtcgagagcatgaggagccacgtcctacaggtagagaagctgaga
ggcccctcagcctactgcttgtaatctggcagttcaggtaagccagccat
ggattcagtctgagtctgaaggcctgaggaccaggtaggcactgtgcaag
ctgagatgagatgaactaagttcagcagtgtgtagtcagtattctttttt
tcacttgacacaaattcatatggaaaggag
gaattcaaagtgcttggatttaaccctccatttgatgaagaacttacagt
gccccaagcattcatcctattgttactactttctggtttgctttcaggag
catccacagagacctgacatgtgcttattagggctccatggggaaagccc
catgggccagtactacttccatggcccacattattgctgctgctaccaac
cacaaatttgctttgagaaccaagtccagtgctgttccgaaggccatctt
tctcaccacctgtgttccctgaagccatgacagtgatgtttctctctgac
tcagaattggaggcagaatcagcatctatacattctggagccaactcagg
atcactgccaggggctgagggccatgcttctttttccaacaagtcgttta
cagcattcttacagcttgtgctacagtcacttgtagaagacacaggtccc
cgctggcaattttcataatgggatcctgaagtattatgatttatatctag
aataaaggagaagtatatctatttataagtgttaacaatttccaaaatag
tatgtaggctgagaaaaatgacgatccattagaaatacacgtagctcctc
aacattagcaagatgctccgcagaatggctgtgaggcgctgattatcttt
cagccaccaaggctccatgttcagtaatttcacaggcagaattctgctgc
tttgttcaataccctacagtacagcatgggacaaaaagtcccacagggag
acctgctaaatatataaacggacaacatccaacaaatataagaattctgg
agagaagactgagtggtaatgatgaattagggcaatccaggcttaggact
tgacacgggagaaacagactgggatgtaaaaagctaagtaagcgtaagca
gcccaaaatgattccgtttcctaaaacagctttccacacaactcctttgg
gttagaagaattctgtaaggatcccaaagcctttgcactgtatttctggg
ttatagtgtatacacttaattaccatgctatacatggaagaacatactta
aacatttcctaattactttcatagccatgcttagtaaggaacaacaagaa
aaaatgtatgctgaaatcccaaattatggatcagtatcagcagctgaatc
tgaaggccatagcatccatccactgaacaagcctgattggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_130171002_130172084
seq2: B6Ng01-119A10.b_45_1124

seq1  GAATTCTGTTTAGATTTGTAAACATTTTTTAATTGTGTTATTTTGTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTAGATTTGTAAACATTTTTTAATTGTGTTATTTTGTTTCT  50

seq1  TGATGTCCAGAGATTTTTTTTGTTTGTTTGTTTGTTTGGTTGGTTGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCCAGAGATTTTTTTTGTTTGTTTGTTTGTTTGGTTGGTTGGATT  100

seq1  TTGTTGTTGTTATTGTTGTTGTTGCTGTTGCTGTTGTTGTTGTTGCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTATTGTTGTTGTTGCTGTTGCTGTTGTTGTTGTTGCTGCT  150

seq1  GCTGTTTCTGCTGCTGCTGTTGGTAGTTGTTTTTAGTTCTTTCTATATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCTGCTGCTGCTGTTGGTAGTTGTTTTTAGTTCTTTCTATATCT  200

seq1  TAGATAGTAATCTTCTATGCGTGTATAATTGGTAAAGATTATTCCTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGTAATCTTCTATGCGTGTATAATTGGTAAAGATTATTCCTCATT  250

seq1  AAAATATTTTACATTTATTTGTTTTATGGTATGTGTATTAGTGTTTTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTTACATTTATTTGTTTTATGGTATGTGTATTAGTGTTTTGCC  300

seq1  TGCATGTATGACCTGCGCAGCACGTGTGTGACCAATACCCATGGGATTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTATGACCTGCGCAGCACGTGTGTGACCAATACCCATGGGATTGG  350

seq1  ATCTCCTTGAACTGGAGTCACCTATGATTGTGACCACTGTGTGTGTGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTTGAACTGGAGTCACCTATGATTGTGACCACTGTGTGTGTGTTG  400

seq1  GGAACTGAACCAGGGTCATCTGGAAGAGCAGCCAGTGCTGCTAACCACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGAACCAGGGTCATCTGGAAGAGCAGCCAGTGCTGCTAACCACTG  450

seq1  AGCCATCTCCCCAGCCCCCATTCCTTATTTTTGTTATGTCTGGGTTATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTCCCCAGCCCCCATTCCTTATTTTTGTTATGTCTGGGTTATAA  500

seq1  AAGTAGTATATATTCAAGCATCAAACAAACCCACTTGGTTATTAATAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTATATATTCAAGCATCAAACAAACCCACTTGGTTATTAATAATC  550

seq1  ATGGAAGATTTAAAAAAAGATTTAGTTATTTATTTTACATGTCTGAGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGATTTAAAAAAAGATTTAGTTATTTATTTTACATGTCTGAGTAC  600

seq1  ATTGTTGTTGTCTACAGACTCACCAGAAGAGGGCATTGGATCCCATTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGTTGTCTACAGACTCACCAGAAGAGGGCATTGGATCCCATTATA  650

seq1  GATGGTTGTGAACCACCATGTGGTTGCTAGGAATTGAACTCAAGACCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTGTGAACCACCATGTGGTTGCTAGGAATTGAACTCAAGACCTCA  700

seq1  GGAAGAGCACTCAGTGCTTTAACCACTGAGCCACCTCTCCAGCCTCATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGCACTCAGTGCTTTAACCACTGAGCCACCTCTCCAGCCTCATCA  750

seq1  TGGAAGGTTTTTTGTTTGTTTTTGGGTTTTGGGGTTTTTTTGACCCAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGTTTTTTGTTTGTTTTTGGGTTTTGGGGTTTTTTTGACCCAGAA  800

seq1  TTCAGGTAAACTTTTGATGTTTTCTGAGGTTGTTAGTCAGGTTCTTCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTAAACTTTTGATGTTTTCTGAGGTTGTTAGTCAGGTTCTTCAGA  850

seq1  GGGATGTCGAGAGCATGAGGAGCCACGTCCTACAGGTAGAGAAGCTGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTCGAGAGCATGAGGAGCCACGTCCTACAGGTAGAGAAGCTGAGA  900

seq1  GGCCCCTCAGCCTACTGCTTGTAATCTGGCAGTTCAGGTAAGCCAGCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTCAGCCTACTGCTTGTAATCTGGCAGTTCAGGTAAGCCAGCCAT  950

seq1  GGAGTTCAGTCTGAGTCTGAAGGCCTGAGGACCAGGTAGGCACTGTGCAA  1000
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGA-TTCAGTCTGAGTCTGAAGGCCTGAGGACCAGGTAGGCACTGTGCAA  999

seq1  GCTGGAGATGAGATGAACTAAGTTCAGGCAGTGTGTTAGTCAGTATTCTT  1050
      ||| |||||||||||||||||||||| |||||||| ||||||||||||||
seq2  GCT-GAGATGAGATGAACTAAGTTCA-GCAGTGTG-TAGTCAGTATTCTT  1046

seq1  TTTTCAACTTGACACAAA-TCATATGGAAAGGAG  1083
      ||||  |||||||||||| |||||||||||||||
seq2  TTTTTCACTTGACACAAATTCATATGGAAAGGAG  1080

seq1: chr7_130312338_130313545
seq2: B6Ng01-119A10.g_65_1255 (reverse)

seq1  GCCAATCTAAGGCTTGGTCATGTGATGGATGCCTATGGCCTTCAGTATCA  50
      |||||||  ||||||| |||   |||||||| |||||||||||||  |||
seq2  GCCAATC--AGGCTTGTTCAGTGGATGGATG-CTATGGCCTTCAGATTCA  47

seq1  GCTGCTGAATTACTGAT-CATAATTTGGTGATTTTCAGCATACCAATTTT  99
      ||||||||  ||||||| |||||||||| || |||||||||| || ||||
seq2  GCTGCTGA--TACTGATCCATAATTTGG-GA-TTTCAGCATA-CATTTTT  92

seq1  TCTGTGTTGTCTCTTACTAAGCATGGCTATGAAAGTAAATTAGGAAATTG  149
      ||| ||||||  |||||||||||||||||||||||| |||||||||| ||
seq2  TCT-TGTTGTTCCTTACTAAGCATGGCTATGAAAGT-AATTAGGAAA-TG  139

seq1  TTTAAAGTTAATGTTCTTCCTTATGTATAGCATGGTAATTAAGTGTATAC  199
      ||| ||||  ||||||||||  ||||||||||||||||||||||||||||
seq2  TTT-AAGT--ATGTTCTTCC--ATGTATAGCATGGTAATTAAGTGTATAC  184

seq1  ACTAATAAACCAGAAATACAGTGCAAAGGCTTTGGGATCCTTACAGAATT  249
      ||| |||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACT-ATAACCCAGAAATACAGTGCAAAGGCTTTGGGATCCTTACAGAATT  233

seq1  CTTCTAACCCAAAGGAGTTGTGTGGAAAGCTGTTTTAGGAAACGGAATCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAACCCAAAGGAGTTGTGTGGAAAGCTGTTTTAGGAAACGGAATCA  283

seq1  TTTTGGGCTGCTTACGCTTACTTAGCTTTTTACATCCCAGTCTGTTTTCT  349
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTTGGGCTGCTTACGCTTACTTAGCTTTTTACATCCCAGTCTG-TTTCT  332

seq1  CCCGTGTCAAGTCCTAAGCCTGGATTGCCCTAATTCATCATTACCACTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGTCAAGTCCTAAGCCTGGATTGCCCTAATTCATCATTACCACTCA  382

seq1  GTCTTCTCTCCAGAATTCTTATATTTGTTGGATGTTGTCCGTTTATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTCTCCAGAATTCTTATATTTGTTGGATGTTGTCCGTTTATATAT  432

seq1  TTAGCAGGTCTCCCTGTGGGACTTTTTGTCCCATGCTGTACTGTAGGGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGGTCTCCCTGTGGGACTTTTTGTCCCATGCTGTACTGTAGGGTA  482

seq1  TTGAACAAAGCAGCAGAATTCTGCCTGTGAAATTACTGAACATGGAGCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAAAGCAGCAGAATTCTGCCTGTGAAATTACTGAACATGGAGCCT  532

seq1  TGGTGGCTGAAAGATAATCAGCGCCTCACAGCCATTCTGCGGAGCATCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTGAAAGATAATCAGCGCCTCACAGCCATTCTGCGGAGCATCTT  582

seq1  GCTAATGTTGAGGAGCTACGTGTATTTCTAATGGATCGTCATTTTTCTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGTTGAGGAGCTACGTGTATTTCTAATGGATCGTCATTTTTCTCA  632

seq1  GCCTACATACTATTTTGGAAATTGTTAACACTTATAAATAGATATACTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACATACTATTTTGGAAATTGTTAACACTTATAAATAGATATACTTC  682

seq1  TCCTTTATTCTAGATATAAATCATAATACTTCAGGATCCCATTATGAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTATTCTAGATATAAATCATAATACTTCAGGATCCCATTATGAAAA  732

seq1  TTGCCAGCGGGGACCTGTGTCTTCTACAAGTGACTGTAGCACAAGCTGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGCGGGGACCTGTGTCTTCTACAAGTGACTGTAGCACAAGCTGTA  782

seq1  AGAATGCTGTAAACGACTTGTTGGAAAAAGAAGCATGGCCCTCAGCCCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCTGTAAACGACTTGTTGGAAAAAGAAGCATGGCCCTCAGCCCCT  832

seq1  GGCAGTGATCCTGAGTTGGCTCCAGAATGTATAGATGCTGATTCTGCCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGATCCTGAGTTGGCTCCAGAATGTATAGATGCTGATTCTGCCTC  882

seq1  CAATTCTGAGTCAGAGAGAAACATCACTGTCATGGCTTCAGGGAACACAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTGAGTCAGAGAGAAACATCACTGTCATGGCTTCAGGGAACACAG  932

seq1  GTGGTGAGAAAGATGGCCTTCGGAACAGCACTGGACTTGGTTCTCAAAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGAGAAAGATGGCCTTCGGAACAGCACTGGACTTGGTTCTCAAAGC  982

seq1  AAATTTGTGGTTGGTAGCAGCAGCAATAATGTGGGCCATGGAAGTAGTAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTGGTTGGTAGCAGCAGCAATAATGTGGGCCATGGAAGTAGTAC  1032

seq1  TGGCCCATGGGGCTTTCCCCATGGAGCCCTAATAAGCACATGTCAGGTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCATGGGGCTTTCCCCATGGAGCCCTAATAAGCACATGTCAGGTCT  1082

seq1  CTGTGGATGCTCCTGAAAGCAAACCAGAAAGTAGTAACAATAGGATGAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGATGCTCCTGAAAGCAAACCAGAAAGTAGTAACAATAGGATGAAT  1132

seq1  GCTTGGGGCACTGTAAGTTCTTCATCAAATGGAGGGTTAAATCCAAGCAC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGGCACTGTAAGTTCTTCATCAAATGGAGGGTTAAATCCAAGCAC  1182

seq1  TTTGAATTC  1208
      |||||||||
seq2  TTTGAATTC  1191