BAC Information

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BAC

Clone NameB6Ng01-119E24
Chromosome5 (Build37)7 (Build37)
Map Location 18,084,517 - 18,084,5787,368,945 - 7,370,079
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119E24.bB6Ng01-119E24.g
ACCDH923563DH923564
length1,0211,112
definitionDH923563|Mus musculus domesticus DNA, BAC clone: B6Ng01-119E24, 5' end.DH923564|Mus musculus domesticus DNA, BAC clone: B6Ng01-119E24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,517 - 18,084,578)(7,368,945 - 7,370,079)
sequence
gaattctcaactgaagaaaaccaaatggatgaaaagcacgtaaaaaaatg
ttcaacatccttaatcaccagggaaatgcaaatcaaaataaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacacc
agatgctggcgaggatgtggtaaaagaggaacactcttccattgctggtg
ggattgagagctgatacaaccactctggaaatcagtctggtagttcctca
gaaaattcgcagacatagtgctatcagaggatccatcaatacctcccctg
ggcatttacccagaagactttccaacttgtaataaggaaacatgctccac
tatgttcatagcagccttatttataatagcattggatttaggattggtaa
agatctttacccaatctttttttttttttgctgttttgtcttactgacat
actttgcctaacacatgctttgcaattttatgagattaattctcaatctt
atagcacaaaccatttctgttgttcaggattttccccctgtgcaaatatc
ttcgagactcttctctactttctcctctataaggtcattgtctctgattt
catgtgtagttccttgatccacttagacttgatttttgtacaaagagata
aaaatggattaattcacattcttctacatgacaattgccagttgtaccag
tgccatttgttcaaaatgatcttattttcactggatgattgtagctcctt
tgttaaagattaagtaaccatagatgtgtgagttcatttctgtgccttca
attctattccactgatctatctgtctgtcgctgtaccagtaccatgcagt
ttttcatcacatttgctctgtagtacagcttgaggtcactcatggtgatt
ccaacagaggttcttttatagttgaaagtagtttatctatcatcattttt
tggttgttttgttttgttttgtatccagatgaatttgcaatgcctttcta
ctctgagaatgagttggactg
gaattccattaaaccgtagtttaaatatcaaatctttcttttcaacgatg
ccatcttccatgaattttcaatgagtaaaatgtggatgttaatgaagaat
gtgttccttaaagggacagtgctaatgattatatttctatgaagactgac
ttagggaagtgattgtttttgtcaatgcattttagatccatttggctccc
tttatgagaagagaattgataaatgtgaaatatttactgtagctgcaaac
actcaattgtccttttgaaaagtcgttttctagaaagcagcgtaattaaa
gcatctgcctctcattctgttttccagaattttctgagtccaggacctca
atcagaactgcacacaaagggcaatctccgaaagaaattaggttcatgca
aatgtcagtagttttacctttcccttccataactacaatataaatagcat
gttgacatagctacaagcttatttcatttcattttttatttattattact
caattttttttacagtctagtggttatccccctcctggttttcccctcct
gactcttcctcatctaacaactcctccgccatctccaagatgatatacct
acctccccaacgcccagcccttcctaatccctggggacttaagtctctct
ggggttaggtgtgtctctcccactgatgctagaccaggcagtcttatgct
gcatatttgatgggggcttcacatcagctagtgtatgatctctggttaga
ggctcaatgtctgagagatcttgcttgtccaggtttgttgagaatgctgg
tctttctatgggtcaccctcctcagcttcttacaactattcccaattcat
ccagagagtccctgggcttctgatcattgttggatatatatattgtattt
gacagcagaaaggaacatttccttcatagactatcggccaataacttgaa
gacagatgaaaaaaagtcagtatttttatgtgtgtgctctacttgaatca
aaaaatatgtctgatttcatctttgctgatattagtagtcgggttctcac
tatatttgatttgaagatgttctatgtgaacctgcctgtctagatctcat
tttctcataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084517_18084578
seq2: B6Ng01-119E24.b_368_429 (reverse)

seq1  GCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  GCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTTTCCTTATT  50

seq1  ACCAGTTGGAAA  62
      || |||||||||
seq2  ACAAGTTGGAAA  62

seq1: chr7_7368945_7370079
seq2: B6Ng01-119E24.g_63_1174

seq1  GAATTCCATTAAACCGTAGTTTAAATATCAAATCTTTCTTTTCAACGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTAAACCGTAGTTTAAATATCAAATCTTTCTTTTCAACGATG  50

seq1  CCATCTTCCATGAATTTTCAATGAGTAAAATGTGGATGTTAATGAAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCCATGAATTTTCAATGAGTAAAATGTGGATGTTAATGAAGAAT  100

seq1  GTGTTCCTTAAAGGGACAGTGCTAATGATTATATTTCTATGAAGACTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCTTAAAGGGACAGTGCTAATGATTATATTTCTATGAAGACTGAC  150

seq1  TTAGGGAAGTGATTGTTTTTGTCAATGCATTTTAGATCCATTTGGCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAAGTGATTGTTTTTGTCAATGCATTTTAGATCCATTTGGCTCCC  200

seq1  TTTATGAGAAGAGAATTGATAAATGTGAAATATTTACTGTAGCTGCAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAGAAGAGAATTGATAAATGTGAAATATTTACTGTAGCTGCAAAC  250

seq1  ACTCAATTGTCCTTTTGAAAAGTCGTTTTCTAGAAAGCAGCGTAATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATTGTCCTTTTGAAAAGTCGTTTTCTAGAAAGCAGCGTAATTAAA  300

seq1  GCATCTGCCTCTCATTCTGTTTTCCAGAATTTTCTGAGTCCAGGACCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGCCTCTCATTCTGTTTTCCAGAATTTTCTGAGTCCAGGACCTCA  350

seq1  ATCAGAACTGCACACAAAGGGCAATCTCCGAAAGAAATTAGGTTCATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAACTGCACACAAAGGGCAATCTCCGAAAGAAATTAGGTTCATGCA  400

seq1  AATGTCAGTAGTTTTACCTTTCCCTTCCATAACTACAATATAAATAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGTAGTTTTACCTTTCCCTTCCATAACTACAATATAAATAGCAT  450

seq1  GTTGACATAGCTACAAGCTTATTTCATTTCATTTTTTATTTATTATTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACATAGCTACAAGCTTATTTCATTTCATTTTTTATTTATTATTACT  500

seq1  CAATTTTTTTTACAGTCTAGTGGTTATCCCCCTCCTGGTTTTCCCCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTTTTACAGTCTAGTGGTTATCCCCCTCCTGGTTTTCCCCTCCT  550

seq1  GACTCTTCCTCATCTAACAACTCCTCCGCCATCTCCAAGATGATATACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTCCTCATCTAACAACTCCTCCGCCATCTCCAAGATGATATACCT  600

seq1  ACCTCCCCAACGCCCAGCCCTTCCTAATCCCTGGGGACTTAAGTCTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCCAACGCCCAGCCCTTCCTAATCCCTGGGGACTTAAGTCTCTCT  650

seq1  GGGGTTAGGTGTGTCTCTCCCACTGATGCTAGACCAGGCAGTCTTATGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTAGGTGTGTCTCTCCCACTGATGCTAGACCAGGCAGTCTTATGCT  700

seq1  GCATATTTGATGGGGGCTTCACATCAGCTAGTGTATGATCTCTGGTTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTGATGGGGGCTTCACATCAGCTAGTGTATGATCTCTGGTTAGA  750

seq1  GGCTCAATGTCTGAGAGATCTTGCTTGTCCAGGTTTGTTGAGAATGCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAATGTCTGAGAGATCTTGCTTGTCCAGGTTTGTTGAGAATGCTGG  800

seq1  TCTTTCTATGGGTCACCCTCCTCAGCTTCTTACAACTATTCCCAATTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTATGGGTCACCCTCCTCAGCTTCTTACAACTATTCCCAATTCAT  850

seq1  CCAGAGAGTCCCTGGGCTTCTGATCATTGTTGGATATAATATATTTGTAT  900
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  CCAGAGAGTCCCTGGGCTTCTGATCATTGTTGGATAT-ATATA-TTGTAT  898

seq1  TTGACAGCAGAAAAGGAACATTTCCTTCATAGACTATCGGCCAATAACTT  950
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGCAG-AAAGGAACATTTCCTTCATAGACTATCGGCCAATAACTT  947

seq1  GAAGAACAGATGAAAAAAAGTCAGTATTTTTATGTGTGTGCTCTTACTTG  1000
      |||| |||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAAG-ACAGATGAAAAAAAGTCAGTATTTTTATGTGTGTGCTC-TACTTG  995

seq1  AAATCAAAAAAATATGTTCTGATTTCATCTTTGCTGATTATTTAGTTAGT  1050
       |||| |||||||||| |||||||||||||||||||||   |||| ||||
seq2  -AATC-AAAAAATATG-TCTGATTTCATCTTTGCTGAT--ATTAG-TAGT  1039

seq1  CTGTGTTTCTCACTAATTATTTGATTTGGTAGATGGTTTCTATGTGTAAC  1100
      |   | |||||||||  |||||||||| | |||||  |||||||||  | 
seq2  C--GGGTTCTCACTA--TATTTGATTT-GAAGATG--TTCTATGTG--AA  1080

seq1  CCTGCCTGTCCTAGATCTCATTTTTCTACATAAAA  1135
      ||||||||| |||||||||| |||||| |||||||
seq2  CCTGCCTGT-CTAGATCTCA-TTTTCT-CATAAAA  1112