BAC Information

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BAC

Clone NameB6Ng01-121L24
Chromosome7 (Build37)
Map Location 4,395,864 - 4,396,949
singlet/doubletsinglet
Overlap geneRdh13
Upstream geneCacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1
Downstream geneEps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121L24.bB6Ng01-121L24.g
ACCDH925356DH925357
length1,0221,106
definitionDH925356|Mus musculus domesticus DNA, BAC clone: B6Ng01-121L24, 5' end.DH925357|Mus musculus domesticus DNA, BAC clone: B6Ng01-121L24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtgccccactttttaatagggttatttgatt
ttctggagtccagcttcttgagttctttgcatatattggatattagtccc
ctatttgatttaggattggtaaagatcatttcccaatctgttggtggccc
ttttgtcttattgacagtgtcttttgccttacagaagctttgcaatttaa
tgagcattgcatttgttgattcttgatcttacagcacaagccattgctgt
tctattcaggaatttttccccagtgcccatatcttcaatgttttccccca
ctttctcctctataagtttcaatgtctctagttttatgtggagttccttg
atccacttagacttgagcttagtacaaggatataaggatgtatcaattca
cattcttctacatgataactgccagttaagccagcaccatttgttgaaaa
tgctgtcttttttccactggatggttttagctcccttgtcaaagatcaag
tgaccataggtgtgtgggttcatttctgggtcttcaatcctattccattg
atctacctgtctgtcgctttaccagtaccatgcagtttttatcacaattg
ctctgtagtgcagctttaggtcaggcatggtgatacccccagaggttctt
ttattgttgagaatagtttttgaagctggaagaacccagatgtccctcaa
cagaggaatggatacagaaaatgtggtacatttacacaatttactcagct
attaaaaacaatgaattttatgaaattcttagacaaatggagggtatcat
tcttactgaggtaatccaatcacaaaagaactcacgtgatatgcactcac
tgttaagtggatattagtccagaactttagaatacttcagatacaatttg
caaaatacatgaacttcagagagagaagtgtggatactttcttccttctt
agatagggaacaaatacccatgtaggagtacagagacaagtttgggagat
gagatgtacggaagactatgca
gaattcttcccgctcactagtatggcttttccgggagaggagggcgggtc
acctcttcaaggtcacctagggagaaggggtggagcatggatcttgtgct
cattttatctctggaccactccttctctaccctttcctctttgcccagcc
tgtttgcctccccttccttcctttcttccctttcctctcctcccccgtcc
ttctttccttccttgcgtttttcagactgggtctcaccatgaagccttgg
ctggcctggaactcgttatattgaccaggctgattttgaattcacgagag
atctgcctctgcctcctgagtgctgggaccaaggacatgcgtgtctgtca
ccgctaacagcttacatgaggtgtttccctccccgccccccccccccccg
catgtatgcatatgctatgctttcggaggttaaaagaagatgttagatcc
cgtggaactggagttattgtgagtcaccgtgtggggtgctgggagctgat
cctgggtcctctgtaagagcagcagtgctcttactgctgagacatctctc
cagcttcttgatgtatacacacccgcttcccaatcattgttctccaactt
ccatggaccccttctgacacatgctccttccaacgtcatgcattctgtct
gtctgtctgtctatccatccatccatctatagacaaggcagcatgtagcc
taggctggccttgagcttgctctgtagtcgaggatgatgaccttaaattc
ctggtattcctgccattgcctcctgagtactgggctttgcaagtgtgtac
caccaccttctggctattgtcttttgttttttattaaaagtatgaataaa
atgattgttaccctcttggagatgttccaaccgtataattctttttctgg
agggccatgacgagggactcccggtgtgtttgggtgcctttggtgatgaa
tgtgagctttacgagtggcttttgccccacctcattaatctgaaggcagg
cacgaaggcagacagaactcactgttgctgttttctacccttaaggacta
tggtcgctatggtgggcttgtcccaaccaggcatcaatacctggaaagac
tgttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_4395864_4396949
seq2: B6Ng01-121L24.g_67_1172 (reverse)

seq1  ATAACAGTCTTCCCAGGTATGGTGGCCTTGCTGGGACAAGCCCCACC--A  48
      ||||||||||| |||||||| |  |||| | ||||||||| ||||||  |
seq2  ATAACAGTCTTTCCAGGTATTGATGCCTGGTTGGGACAAG-CCCACCATA  49

seq1  GCGA-CATAGTCCCTGAAGGTGAGAAACAGC-ACAGTGAGTTCTGTCTGC  96
      |||| |||||||| | | |||   ||||||| ||||||||||||||||||
seq2  GCGACCATAGTCCTTAAGGGTAGAAAACAGCAACAGTGAGTTCTGTCTGC  99

seq1  C-TCGTGCCTGCCTCAAGATTTATGAGCTGGGGCAAA--GCACTCGT-AA  142
      | ||||||||||||  ||||| ||||| |||||||||   ||||||| ||
seq2  CTTCGTGCCTGCCTTCAGATTAATGAGGTGGGGCAAAAGCCACTCGTAAA  149

seq1  GCTCACATCCATCACCAAA-GCACCCAAACACA-CGGGAGT-CCTCGTCA  189
      |||||||| |||||||||| ||||||||||||| ||||||| ||||||||
seq2  GCTCACATTCATCACCAAAGGCACCCAAACACACCGGGAGTCCCTCGTCA  199

seq1  TGGCC--TCAG-AAAAGGATTATAC-GTTGGAACATCTCCAAGA-GGTAA  234
      |||||   ||| ||||| ||||||| |||||||||||||||||| |||||
seq2  TGGCCCTCCAGAAAAAGAATTATACGGTTGGAACATCTCCAAGAGGGTAA  249

seq1  CAATCA-TTTATTCATACTTTTA--TAAAAACAAAAGACAATAGCCAGAA  281
      |||||| ||||||||||||||||   ||||||||||||||||||||||||
seq2  CAATCATTTTATTCATACTTTTAATAAAAAACAAAAGACAATAGCCAGAA  299

seq1  -GTGGTGGTACACACTTGC-AAGCCCAGTACTCAGGAGGCAATGGCAGGA  329
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGTGGTGGTACACACTTGCAAAGCCCAGTACTCAGGAGGCAATGGCAGGA  349

seq1  ATACCAGGAATTTAAGGTCATCATCCTCGACTACAGAGCAAGCTCAAGGC  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGGAATTTAAGGTCATCATCCTCGACTACAGAGCAAGCTCAAGGC  399

seq1  CAGCCTAGGCTACATGCTGCCTTGTCTATAGATGGATGGATGGATAGACA  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAGGCTACATGCTGCCTTGTCTATAGATGGATGGATGGATAGACA  449

seq1  GACAGACAGACAGAATGCATGACGTTGGAAGGAGCATGTGTCAGAAGGGG  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAGACAGAATGCATGACGTTGGAAGGAGCATGTGTCAGAAGGGG  499

seq1  TCCATGGAAGTTGGAGAACAATGATTGGGAAGCGGGTGTGTATACATCAA  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGAAGTTGGAGAACAATGATTGGGAAGCGGGTGTGTATACATCAA  549

seq1  GAAGCTGGAGAGATGTCTCAGCAGTAAGAGCACTGCTGCTCTTACAGAGG  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGGAGAGATGTCTCAGCAGTAAGAGCACTGCTGCTCTTACAGAGG  599

seq1  ACCCAGGATCAGCTCCCAGCACCCCACACGGTGACTCACAATAACTCCAG  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGATCAGCTCCCAGCACCCCACACGGTGACTCACAATAACTCCAG  649

seq1  TTCCACGGGATCTAACATCTTCTTTTAACCTCCGAAAGCATAGCATATGC  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACGGGATCTAACATCTTCTTTTAACCTCCGAAAGCATAGCATATGC  699

seq1  ATACATGCGGGGGGGGGGGGGGCGGGGAGGGAAACACCTCATGTAAGCTG  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGCGGGGGGGGGGGGGGCGGGGAGGGAAACACCTCATGTAAGCTG  749

seq1  TTAGCGGTGACAGACACGCATGTCCTTGGTCCCAGCACTCAGGAGGCAGA  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCGGTGACAGACACGCATGTCCTTGGTCCCAGCACTCAGGAGGCAGA  799

seq1  GGCAGATCTCTCGTGAATTCAAAATCAGCCTGGTCAATATAACGAGTTCC  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATCTCTCGTGAATTCAAAATCAGCCTGGTCAATATAACGAGTTCC  849

seq1  AGGCCAGCCAAGGCTTCATGGTGAGACCCAGTCTGAAAAACGCAAGGAAG  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCAAGGCTTCATGGTGAGACCCAGTCTGAAAAACGCAAGGAAG  899

seq1  GAAAGAAGGACGGGGGAGGAGAGGAAAGGGAAGAAAGGAAGGAAGGGGAG  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGGACGGGGGAGGAGAGGAAAGGGAAGAAAGGAAGGAAGGGGAG  949

seq1  GCAAACAGGCTGGGCAAAGAGGAAAGGGTAGAGAAGGAGTGGTCCAGAGA  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAGGCTGGGCAAAGAGGAAAGGGTAGAGAAGGAGTGGTCCAGAGA  999

seq1  TAAAATGAGCACAAGATCCATGCTCCACCCCTTCTCCCTAGGTGACCTTG  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGAGCACAAGATCCATGCTCCACCCCTTCTCCCTAGGTGACCTTG  1049

seq1  AAGAGGTGACCCGCCCTCCTCTCCCGGAAAAGCCATACTAGTGAGCGGGA  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTGACCCGCCCTCCTCTCCCGGAAAAGCCATACTAGTGAGCGGGA  1099

seq1  AGAATTC  1086
      |||||||
seq2  AGAATTC  1106