BAC Information

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BAC

Clone NameB6Ng01-123C19
Chromosome7 (Build37)
Map Location 144,140,385 - 144,284,152
singlet/doubletdoublet
Overlap geneMgmt
Upstream geneLOC668764, LOC546009, EG621677, EG668771
Downstream geneEG621804, Ebf3, 9430038I01Rik, Txnl2, LOC435235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123C19.bB6Ng01-123C19.g
ACCDH926414DH926415
length1,1331,095
definitionDH926414|Mus musculus domesticus DNA, BAC clone: B6Ng01-123C19, 5' end.DH926415|Mus musculus domesticus DNA, BAC clone: B6Ng01-123C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,140,385 - 144,141,535)(144,283,048 - 144,284,152)
sequence
gaattcacttcatttttcagaggtctccaaatagccgtggaaaatcgatt
ctttttctgccaccaattaatgtcagcccctcttgtggctttggtggatg
ccacagtgatgatgtcgggaatgtaggtacaggagccacactctgggttc
tgctgccaagtggaaagtcataatcccaactgggtcctggaactggccac
agggataccccgggtaggtgactcaacctagatgctgtgcctaggactga
catcctcggagaactgcagggtggagtacatacaggtttcctgtggcctc
tgctgtcagcaaacattcaaacaagtgggctgttgggggccggagaagtg
cctcagtggctagaagcatttgcggctcttccagtggactctagttctgg
ttctagcgtccaccctcgtggctcacaagcacctgttgttctagctcaag
gggacctcacacattcttttggcttccatgagcaccacactcatgtgcac
atacccagacatagacaggcttataaaacattgggcaggtggagccacca
tggctcccaggatctgaccatcaggattgtacacctctggctgtctccag
ttatttggaccccatgtgttttggtttgatgggaatattgattatacaag
ctgaatgcccttgcatccagagagcagccttcaagaaggcaagcccgagt
tctcgtgtccaggatagcttgtttcatcagccatcagcctgtgcttggag
tcagggccctgagagtttggtatttcccctgcagtctgtgagctgttcca
aaagtagaatttgaagaaataggatatggacagaggagcctttgtaaact
gtgacaagtggcccgaggctgagatctccttgcagctcataccctgaggc
ctggaggagacccctttcaaattcttgcctgtgtatgtaggagtgaggtg
ctatgcaggaaagcttggggtacgatgctacgcttgagtgtatttgggaa
gcattggtcatgccaggctgagggagaggaaaaggagcatgatggttcta
gaagtctgtgggtgacacagaaatccaggccagaagcatgcgagcccgga
catcccagcagctggaacagcactgatgagact
gaattccatatattctgaaatttaattaaaaccccaaagatttcaaatta
gatgcaatttgaaatgcctggggcagaaatacatgcacttgcgtggcgag
ggtatcacactgaaagctgataccgtaattggtcttgatgtatttttgtg
ttgctgggctgaagcacagaactcataaccatataaaaattctctgtaga
ttacctgctcattgaaaatgccatcactcaggtaggcctctactaaatta
ccatgctactaaaatgcacaaagtgattcggagagtacagtggcacagct
ggtcgacgctgccaatgagttatgcatgcgtcaacgctgccttttttctt
agtaaaatatgctcagttgaatattaaaatataattggcattcaacctaa
gtagcttaaaccattttgttatcttcttttaaaccgatttggctcctcca
cagttattttcaagaatgcgactcacaaactaatgatagcatcgcattcg
gctaggtttgtgctgtgttacatttgtcataaatgggtatggcttccgca
gcctgccagggctggcctttaatattcgctgctcttgaacatcaaaggcc
caattcttggggaagggaagggggatatgccatttatgttcgttcttgca
tattttattctgagaggaggaaagagatacgaatttctatgaaaagtgtg
tcttggctgcaataagccgggctgtcaccctggctcagttgctcagtctt
cctaaagccatttacttaaggaagggctcaagagaatagcacactgcttg
ggaggggtgggaagggtcagcggagcccagcccaagcaggaatgttgctt
aatttatttaaaggcagacaaaactcacatgtgaaatcatacccaagttt
atgaatgggtccctttaatacaatacgcatttgtgccctaataaccagtg
gtagtccaaaaaaaaaaaagttgttacatagtaacagagcagctatgttc
acactggctgagggcaggctcaactgctactccgatgctgcccgatgaca
tactctgtgaaagaaacctctagtgaactgagctacacgcggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_144140385_144141535
seq2: B6Ng01-123C19.b_45_1177

seq1  GAATTCACTTCATTTTTCAGAGGTCTCCAAATAGCCGTGGAAAATCGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCATTTTTCAGAGGTCTCCAAATAGCCGTGGAAAATCGATT  50

seq1  CTTTTTCTGCCACCAATTAATGTCAGCCCCTCTTGTGGCTTTGGTGGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTGCCACCAATTAATGTCAGCCCCTCTTGTGGCTTTGGTGGATG  100

seq1  CCACAGTGATGATGTCGGGAATGTAGGTACAGGAGCCACACTCTGGGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGATGATGTCGGGAATGTAGGTACAGGAGCCACACTCTGGGTTC  150

seq1  TGCTGCCAAGTGGAAAGTCATAATCCCAACTGGGTCCTGGAACTGGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCAAGTGGAAAGTCATAATCCCAACTGGGTCCTGGAACTGGCCAC  200

seq1  AGGGATACCCCGGGTAGGTGACTCAACCTAGATGCTGTGCCTAGGACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATACCCCGGGTAGGTGACTCAACCTAGATGCTGTGCCTAGGACTGA  250

seq1  CATCCTCGGAGAACTGCAGGGTGGAGTACATACAGGTTTCCTGTGGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCGGAGAACTGCAGGGTGGAGTACATACAGGTTTCCTGTGGCCTC  300

seq1  TGCTGTCAGCAAACATTCAAACAAGTGGGCTGTTGGGGGCCGGAGAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCAGCAAACATTCAAACAAGTGGGCTGTTGGGGGCCGGAGAAGTG  350

seq1  CCTCAGTGGCTAGAAGCATTTGCGGCTCTTCCAGTGGACTCTAGTTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTGGCTAGAAGCATTTGCGGCTCTTCCAGTGGACTCTAGTTCTGG  400

seq1  TTCTAGCGTCCACCCTCGTGGCTCACAAGCACCTGTTGTTCTAGCTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCGTCCACCCTCGTGGCTCACAAGCACCTGTTGTTCTAGCTCAAG  450

seq1  GGGACCTCACACATTCTTTTGGCTTCCATGAGCACCACACTCATGTGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTCACACATTCTTTTGGCTTCCATGAGCACCACACTCATGTGCAC  500

seq1  ATACCCAGACATAGACAGGCTTATAAAACATTGGGCAGGTGGAGCCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAGACATAGACAGGCTTATAAAACATTGGGCAGGTGGAGCCACCA  550

seq1  TGGCTCCCAGGATCTGACCATCAGGATTGTACACCTCTGGCTGTCTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCCAGGATCTGACCATCAGGATTGTACACCTCTGGCTGTCTCCAG  600

seq1  TTATTTGGACCCCATGTGTTTTGGTTTGATGGGAATATTGATTATACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGGACCCCATGTGTTTTGGTTTGATGGGAATATTGATTATACAAG  650

seq1  CTGAATGCCCTTGCATCCAGAGAGCAGCCTTCAAGAAGGCAAGCCCGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGCCCTTGCATCCAGAGAGCAGCCTTCAAGAAGGCAAGCCCGAGT  700

seq1  TCTCGTGTCCAGGATAGCTTGTTTCATCAGCCATCAGCCTGTGCTTGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTGTCCAGGATAGCTTGTTTCATCAGCCATCAGCCTGTGCTTGGAG  750

seq1  TCAGGGCCCTGAGAGTTTGGTATTTCCCCTGCAGTCTGTGAGCTGTTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCCCTGAGAGTTTGGTATTTCCCCTGCAGTCTGTGAGCTGTTCCA  800

seq1  AAAGTAGAATTTGAAGAAATAGGATATGGACAGAGGAGCCTTTGTAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGAATTTGAAGAAATAGGATATGGACAGAGGAGCCTTTGTAAACT  850

seq1  GTGACAAGTGGCCCGAGGCTGAGATCTCCTTGCAGCTCATACCCTGAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTGACAAGTGGCCCGAGGCTGAGATCTCCTTGCAGCTCATACCCTGAGG-  899

seq1  CCTGGAGGAGACCCCTTTCAAATTCTTGCCTGTGTATGTAGGAAGTGAGG  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCTGGAGGAGACCCCTTTCAAATTCTTGCCTGTGTATGTAGG-AGTGAGG  948

seq1  TGCTATGCAGGAAAGCTTGGGGTACGATGCTACGGCTTGAGTGTTATTTG  1000
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  TGCTATGCAGGAAAGCTTGGGGTACGATGCTAC-GCTTGAGTG-TATTTG  996

seq1  GGAAGCATTGGTCCATGCCAGGCTGAAGGGGAGAGGAAAAGGAAGCAATG  1050
      |||||||||||| |||||||||||||  |||||||||||||| ||||   
seq2  GGAAGCATTGGT-CATGCCAGGCTGA--GGGAGAGGAAAAGG-AGCA--T  1040

seq1  GATGGTTCTAGAAGTCTGTGGGTGACACAGAAAATCACAGGGCACAGAAG  1100
      |||||||||||||||||||||||||||||||||  ||   ||| ||||||
seq2  GATGGTTCTAGAAGTCTGTGGGTGACACAGAAATCCA---GGC-CAGAAG  1086

seq1  CATGCGAGCACAGGACATCCCAGGCAGCGTGGAGCAGCACTGATGGAGAC  1150
      ||||||||| | |||||||||| ||||| |||| |||||||||| |||||
seq2  CATGCGAGC-CCGGACATCCCA-GCAGC-TGGAACAGCACTGAT-GAGAC  1132

seq1  T  1151
      |
seq2  T  1133

seq1: chr7_144283048_144284152
seq2: B6Ng01-123C19.g_68_1162 (reverse)

seq1  CTTCCGCTGTTAGCTCAGATCACCTGAGGGTTCTCTTTCACCAGAGTA-G  49
      |||||||   |||||||| ||||  ||||  | ||||||| ||||||| |
seq2  CTTCCGCGTGTAGCTCAGTTCACTAGAGG--TTTCTTTCA-CAGAGTATG  47

seq1  TCATTCGGGCAAGCATCGGGAAGTCGCAGGTGAGCCCTGCCCCTCAGCCA  99
      ||| |||||| ||||||||  ||| |||| |||| |||| ||||||||||
seq2  TCA-TCGGGC-AGCATCGG--AGTAGCAGTTGAG-CCTG-CCCTCAGCCA  91

seq1  GTGTGAACATAGCTGCTCTGTTACTATGGTAACAACTTTTTTTTTTTTTG  149
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  GTGTGAACATAGCTGCTCTGTTACTAT-GTAACAAC-TTTTTTTTTTTTG  139

seq1  GACTACCACTGTTAATTAGGGCACAAATGCGTATTGTATAAAGGGAACCC  199
      ||||||||||| | ||||||||||||||||||||||||| || || ||||
seq2  GACTACCACTGGTTATTAGGGCACAAATGCGTATTGTATTAAAGGGACCC  189

seq1  ATTCATAAACTTGGGTATGATTTCACATGTGAGTTTTGTCTGCCTTTAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAAACTTGGGTATGATTTCACATGTGAGTTTTGTCTGCCTTTAAA  239

seq1  TAAA-TAAGCAAACATTCCTGCTTGGGCTGGGCTCCGCTGACCCTTCCCA  298
      |||| ||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAAGC-AACATTCCTGCTTGGGCTGGGCTCCGCTGACCCTTCCCA  288

seq1  CCCCT-CCAAGCAGTGTGCTATTCCTCTTGAGCCCTTCCTTAAGTAAATG  347
      ||||| ||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCCCTCCCAAGCAGTGTGCTATT-CTCTTGAGCCCTTCCTTAAGTAAATG  337

seq1  GCTTTAGGAAGACTGAGCAACTGAGCCAGGGTGACAGCCCGGCTTATTGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGGAAGACTGAGCAACTGAGCCAGGGTGACAGCCCGGCTTATTGC  387

seq1  AGCCAAGACACACTTTTCATAGAAATTCGTATCTCTTTCCTCCTCTCAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGACACACTTTTCATAGAAATTCGTATCTCTTTCCTCCTCTCAGA  437

seq1  ATAAAATATGCAAGAACGAACATAAATGGCATATCCCCCTTCCCTTCCCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATGCAAGAACGAACATAAATGGCATATCCCCCTTCCCTTCCCC  487

seq1  AAGAATTGGGCCTTTGATGTTCAAGAGCAGCGAATATTAAAGGCCAGCCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTGGGCCTTTGATGTTCAAGAGCAGCGAATATTAAAGGCCAGCCC  537

seq1  TGGCAGGCTGCGGAAGCCATACCCATTTATGACAAATGTAACACAGCACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGCTGCGGAAGCCATACCCATTTATGACAAATGTAACACAGCACA  587

seq1  AACCTAGCCGAATGCGATGCTATCATTAGTTTGTGAGTCGCATTCTTGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGCCGAATGCGATGCTATCATTAGTTTGTGAGTCGCATTCTTGAA  637

seq1  AATAACTGTGGAGGAGCCAAATCGGTTTAAAAGAAGATAACAAAATGGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGTGGAGGAGCCAAATCGGTTTAAAAGAAGATAACAAAATGGTT  687

seq1  TAAGCTACTTAGGTTGAATGCCAATTATATTTTAATATTCAACTGAGCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTACTTAGGTTGAATGCCAATTATATTTTAATATTCAACTGAGCAT  737

seq1  ATTTTACTAAGAAAAAAGGCAGCGTTGACGCATGCATAACTCATTGGCAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTAAGAAAAAAGGCAGCGTTGACGCATGCATAACTCATTGGCAG  787

seq1  CGTCGACCAGCTGTGCCACTGTACTCTCCGAATCACTTTGTGCATTTTAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCGACCAGCTGTGCCACTGTACTCTCCGAATCACTTTGTGCATTTTAG  837

seq1  TAGCATGGTAATTTAGTAGAGGCCTACCTGAGTGATGGCATTTTCAATGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGGTAATTTAGTAGAGGCCTACCTGAGTGATGGCATTTTCAATGA  887

seq1  GCAGGTAATCTACAGAGAATTTTTATATGGTTATGAGTTCTGTGCTTCAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTAATCTACAGAGAATTTTTATATGGTTATGAGTTCTGTGCTTCAG  937

seq1  CCCAGCAACACAAAAATACATCAAGACCAATTACGGTATCAGCTTTCAGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAACACAAAAATACATCAAGACCAATTACGGTATCAGCTTTCAGT  987

seq1  GTGATACCCTCGCCACGCAAGTGCATGTATTTCTGCCCCAGGCATTTCAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACCCTCGCCACGCAAGTGCATGTATTTCTGCCCCAGGCATTTCAA  1037

seq1  ATTGCATCTAATTTGAAATCTTTGGGGTTTTAATTAAATTTCAGAATATA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATCTAATTTGAAATCTTTGGGGTTTTAATTAAATTTCAGAATATA  1087

seq1  TGGAATTC  1105
      ||||||||
seq2  TGGAATTC  1095